Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00542

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00541 and MPMX20_00542 are separated by 66 nucleotidesMPMX20_00542 and MPMX20_00543 are separated by 74 nucleotidesMPMX20_00543 and MPMX20_00544 are separated by 12 nucleotides MPMX20_00541: MPMX20_00541 - hypothetical protein, at 563,300 to 565,684 _00541 MPMX20_00542: MPMX20_00542 - 2-iminobutanoate/2-iminopropanoate deaminase, at 565,751 to 566,137 _00542 MPMX20_00543: MPMX20_00543 - Aspartate carbamoyltransferase regulatory chain, at 566,212 to 566,673 _00543 MPMX20_00544: MPMX20_00544 - Aspartate carbamoyltransferase catalytic subunit, at 566,686 to 567,618 _00544 Position (kb) 565 566 567Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 564.822 kb on + strand, within MPMX20_00541at 564.822 kb on + strand, within MPMX20_00541at 564.830 kb on - strand, within MPMX20_00541at 564.830 kb on - strand, within MPMX20_00541at 564.845 kb on - strand, within MPMX20_00541at 564.895 kb on + strand, within MPMX20_00541at 564.927 kb on + strand, within MPMX20_00541at 564.935 kb on - strand, within MPMX20_00541at 564.936 kb on + strand, within MPMX20_00541at 565.020 kb on + strand, within MPMX20_00541at 565.028 kb on - strand, within MPMX20_00541at 565.039 kb on + strand, within MPMX20_00541at 565.039 kb on + strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.076 kb on + strand, within MPMX20_00541at 565.156 kb on + strand, within MPMX20_00541at 565.164 kb on - strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.246 kb on + strand, within MPMX20_00541at 565.246 kb on - strand, within MPMX20_00541at 565.344 kb on + strand, within MPMX20_00541at 565.350 kb on - strand, within MPMX20_00541at 565.515 kb on + strandat 565.557 kb on + strandat 565.578 kb on + strandat 565.578 kb on + strandat 565.592 kb on + strandat 565.600 kb on - strandat 565.600 kb on - strandat 565.723 kb on - strandat 565.799 kb on - strand, within MPMX20_00542at 565.799 kb on - strand, within MPMX20_00542at 565.818 kb on - strand, within MPMX20_00542at 565.828 kb on - strand, within MPMX20_00542at 565.830 kb on + strand, within MPMX20_00542at 565.952 kb on + strand, within MPMX20_00542at 565.952 kb on + strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.961 kb on + strand, within MPMX20_00542at 566.030 kb on - strand, within MPMX20_00542at 566.066 kb on + strand, within MPMX20_00542at 566.069 kb on - strand, within MPMX20_00542at 566.071 kb on + strand, within MPMX20_00542at 566.074 kb on - strand, within MPMX20_00542at 566.074 kb on - strand, within MPMX20_00542at 566.086 kb on + strand, within MPMX20_00542at 566.094 kb on - strand, within MPMX20_00542at 566.132 kb on + strandat 566.132 kb on + strandat 566.159 kb on + strandat 566.185 kb on - strandat 566.185 kb on - strandat 566.231 kb on - strandat 566.319 kb on + strand, within MPMX20_00543at 566.328 kb on - strand, within MPMX20_00543at 566.345 kb on + strand, within MPMX20_00543at 566.358 kb on - strand, within MPMX20_00543at 566.397 kb on - strand, within MPMX20_00543at 566.397 kb on - strand, within MPMX20_00543at 566.402 kb on + strand, within MPMX20_00543at 566.411 kb on - strand, within MPMX20_00543at 566.444 kb on + strand, within MPMX20_00543at 566.510 kb on - strand, within MPMX20_00543at 566.532 kb on + strand, within MPMX20_00543at 566.546 kb on + strand, within MPMX20_00543at 566.546 kb on - strand, within MPMX20_00543at 566.556 kb on + strand, within MPMX20_00543at 566.556 kb on + strand, within MPMX20_00543at 566.561 kb on + strand, within MPMX20_00543at 566.589 kb on + strand, within MPMX20_00543at 566.594 kb on + strand, within MPMX20_00543at 566.597 kb on - strand, within MPMX20_00543at 566.597 kb on - strand, within MPMX20_00543at 566.604 kb on + strand, within MPMX20_00543at 566.612 kb on - strand, within MPMX20_00543at 566.665 kb on - strandat 566.725 kb on + strandat 566.727 kb on - strandat 566.765 kb on - strandat 566.790 kb on + strand, within MPMX20_00544at 566.798 kb on - strand, within MPMX20_00544at 566.882 kb on - strand, within MPMX20_00544at 566.882 kb on - strand, within MPMX20_00544at 566.885 kb on + strand, within MPMX20_00544at 566.893 kb on - strand, within MPMX20_00544at 566.960 kb on + strand, within MPMX20_00544at 566.998 kb on - strand, within MPMX20_00544at 567.024 kb on - strand, within MPMX20_00544at 567.095 kb on + strand, within MPMX20_00544at 567.108 kb on + strand, within MPMX20_00544

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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564,822 + MPMX20_00541 0.64 +0.6
564,822 + MPMX20_00541 0.64 +1.1
564,830 - MPMX20_00541 0.64 -0.6
564,830 - MPMX20_00541 0.64 +0.4
564,845 - MPMX20_00541 0.65 +0.5
564,895 + MPMX20_00541 0.67 +0.5
564,927 + MPMX20_00541 0.68 -1.9
564,935 - MPMX20_00541 0.69 +0.2
564,936 + MPMX20_00541 0.69 +0.8
565,020 + MPMX20_00541 0.72 +0.3
565,028 - MPMX20_00541 0.72 +1.3
565,039 + MPMX20_00541 0.73 -0.6
565,039 + MPMX20_00541 0.73 +2.6
565,047 - MPMX20_00541 0.73 -0.5
565,047 - MPMX20_00541 0.73 -0.0
565,047 - MPMX20_00541 0.73 +1.1
565,047 - MPMX20_00541 0.73 +0.5
565,047 - MPMX20_00541 0.73 +0.0
565,076 + MPMX20_00541 0.74 +0.8
565,156 + MPMX20_00541 0.78 -0.2
565,164 - MPMX20_00541 0.78 -0.3
565,228 + MPMX20_00541 0.81 -0.1
565,228 + MPMX20_00541 0.81 +0.5
565,228 + MPMX20_00541 0.81 +0.8
565,228 + MPMX20_00541 0.81 -0.2
565,228 + MPMX20_00541 0.81 +0.5
565,228 + MPMX20_00541 0.81 +0.1
565,228 + MPMX20_00541 0.81 +2.6
565,228 + MPMX20_00541 0.81 -0.5
565,228 + MPMX20_00541 0.81 -0.1
565,228 + MPMX20_00541 0.81 -1.0
565,228 + MPMX20_00541 0.81 +0.6
565,236 - MPMX20_00541 0.81 -1.5
565,236 - MPMX20_00541 0.81 -0.7
565,236 - MPMX20_00541 0.81 +0.7
565,246 + MPMX20_00541 0.82 -0.2
565,246 - MPMX20_00541 0.82 -0.2
565,344 + MPMX20_00541 0.86 -0.5
565,350 - MPMX20_00541 0.86 -1.2
565,515 + +0.4
565,557 + -2.3
565,578 + +0.3
565,578 + -0.9
565,592 + -1.9
565,600 - -1.2
565,600 - +0.2
565,723 - -0.8
565,799 - MPMX20_00542 0.12 +0.0
565,799 - MPMX20_00542 0.12 -0.4
565,818 - MPMX20_00542 0.17 +1.1
565,828 - MPMX20_00542 0.20 -1.4
565,830 + MPMX20_00542 0.20 +0.2
565,952 + MPMX20_00542 0.52 -1.4
565,952 + MPMX20_00542 0.52 -1.7
565,960 - MPMX20_00542 0.54 -0.4
565,960 - MPMX20_00542 0.54 -0.1
565,960 - MPMX20_00542 0.54 -0.8
565,961 + MPMX20_00542 0.54 +0.3
566,030 - MPMX20_00542 0.72 +0.1
566,066 + MPMX20_00542 0.81 -0.4
566,069 - MPMX20_00542 0.82 -0.7
566,071 + MPMX20_00542 0.83 +0.0
566,074 - MPMX20_00542 0.83 +0.5
566,074 - MPMX20_00542 0.83 -1.0
566,086 + MPMX20_00542 0.87 -0.6
566,094 - MPMX20_00542 0.89 -0.4
566,132 + +0.3
566,132 + +0.6
566,159 + +0.0
566,185 - +1.3
566,185 - -0.1
566,231 - -0.1
566,319 + MPMX20_00543 0.23 -0.4
566,328 - MPMX20_00543 0.25 +0.9
566,345 + MPMX20_00543 0.29 +0.7
566,358 - MPMX20_00543 0.32 -0.1
566,397 - MPMX20_00543 0.40 +0.6
566,397 - MPMX20_00543 0.40 +0.4
566,402 + MPMX20_00543 0.41 -0.3
566,411 - MPMX20_00543 0.43 -1.0
566,444 + MPMX20_00543 0.50 -0.0
566,510 - MPMX20_00543 0.65 -0.2
566,532 + MPMX20_00543 0.69 -0.7
566,546 + MPMX20_00543 0.72 -0.2
566,546 - MPMX20_00543 0.72 -1.2
566,556 + MPMX20_00543 0.74 +0.2
566,556 + MPMX20_00543 0.74 +1.7
566,561 + MPMX20_00543 0.76 +0.4
566,589 + MPMX20_00543 0.82 +0.8
566,594 + MPMX20_00543 0.83 -0.1
566,597 - MPMX20_00543 0.83 -2.2
566,597 - MPMX20_00543 0.83 +1.6
566,604 + MPMX20_00543 0.85 -1.3
566,612 - MPMX20_00543 0.87 -0.3
566,665 - +1.4
566,725 + -2.5
566,727 - -0.7
566,765 - -2.0
566,790 + MPMX20_00544 0.11 -3.6
566,798 - MPMX20_00544 0.12 -0.7
566,882 - MPMX20_00544 0.21 -2.8
566,882 - MPMX20_00544 0.21 -4.1
566,885 + MPMX20_00544 0.21 -2.2
566,893 - MPMX20_00544 0.22 -2.4
566,960 + MPMX20_00544 0.29 -3.7
566,998 - MPMX20_00544 0.33 -3.7
567,024 - MPMX20_00544 0.36 -3.1
567,095 + MPMX20_00544 0.44 -2.7
567,108 + MPMX20_00544 0.45 -3.1

Or see this region's nucleotide sequence