Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00031

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00029 and MPMX20_00030 are separated by 64 nucleotidesMPMX20_00030 and MPMX20_00031 are separated by 731 nucleotidesMPMX20_00031 and MPMX20_00032 are separated by 3 nucleotidesMPMX20_00032 and MPMX20_00033 are separated by 73 nucleotidesMPMX20_00033 and MPMX20_00034 overlap by 4 nucleotides MPMX20_00029: MPMX20_00029 - hypothetical protein, at 30,616 to 31,062 _00029 MPMX20_00030: MPMX20_00030 - hypothetical protein, at 31,127 to 31,216 _00030 MPMX20_00031: MPMX20_00031 - Acetolactate synthase isozyme 1 large subunit, at 31,948 to 33,636 _00031 MPMX20_00032: MPMX20_00032 - Acetolactate synthase isozyme 1 small subunit, at 33,640 to 33,927 _00032 MPMX20_00033: MPMX20_00033 - Transcriptional regulatory protein UhpA, at 34,001 to 34,594 _00033 MPMX20_00034: MPMX20_00034 - Signal transduction histidine-protein kinase/phosphatase UhpB, at 34,591 to 36,096 _00034 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 30.957 kb on + strand, within MPMX20_00029at 30.957 kb on + strand, within MPMX20_00029at 30.965 kb on - strand, within MPMX20_00029at 30.994 kb on + strand, within MPMX20_00029at 31.017 kb on + strand, within MPMX20_00029at 31.059 kb on + strandat 31.101 kb on + strandat 31.107 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.114 kb on + strandat 31.122 kb on - strandat 31.149 kb on + strand, within MPMX20_00030at 31.149 kb on + strand, within MPMX20_00030at 31.163 kb on - strand, within MPMX20_00030at 31.219 kb on - strandat 31.258 kb on + strandat 31.266 kb on - strandat 31.269 kb on + strandat 31.282 kb on + strandat 31.288 kb on - strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.299 kb on - strandat 31.308 kb on - strandat 31.317 kb on + strandat 31.318 kb on + strandat 31.326 kb on - strandat 31.353 kb on + strandat 31.356 kb on - strandat 31.375 kb on - strandat 31.410 kb on - strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.738 kb on + strandat 31.748 kb on + strandat 31.761 kb on + strandat 31.761 kb on + strandat 31.771 kb on + strandat 31.842 kb on + strandat 31.847 kb on + strandat 31.925 kb on + strandat 31.947 kb on - strandat 32.026 kb on + strandat 32.065 kb on - strandat 32.128 kb on - strand, within MPMX20_00031at 32.128 kb on - strand, within MPMX20_00031at 32.167 kb on - strand, within MPMX20_00031at 32.190 kb on - strand, within MPMX20_00031at 32.194 kb on - strand, within MPMX20_00031at 32.223 kb on - strand, within MPMX20_00031at 32.228 kb on - strand, within MPMX20_00031at 32.242 kb on + strand, within MPMX20_00031at 32.242 kb on + strand, within MPMX20_00031at 32.260 kb on - strand, within MPMX20_00031at 32.281 kb on + strand, within MPMX20_00031at 32.403 kb on - strand, within MPMX20_00031at 32.516 kb on - strand, within MPMX20_00031at 32.532 kb on + strand, within MPMX20_00031at 32.540 kb on - strand, within MPMX20_00031at 32.540 kb on - strand, within MPMX20_00031at 32.576 kb on - strand, within MPMX20_00031at 32.651 kb on + strand, within MPMX20_00031at 32.723 kb on - strand, within MPMX20_00031at 32.838 kb on - strand, within MPMX20_00031at 32.874 kb on - strand, within MPMX20_00031at 32.876 kb on + strand, within MPMX20_00031at 32.934 kb on + strand, within MPMX20_00031at 33.031 kb on - strand, within MPMX20_00031at 33.066 kb on + strand, within MPMX20_00031at 33.066 kb on + strand, within MPMX20_00031at 33.066 kb on + strand, within MPMX20_00031at 33.066 kb on + strand, within MPMX20_00031at 33.094 kb on - strand, within MPMX20_00031at 33.096 kb on - strand, within MPMX20_00031at 33.116 kb on + strand, within MPMX20_00031at 33.116 kb on + strand, within MPMX20_00031at 33.124 kb on - strand, within MPMX20_00031at 33.132 kb on + strand, within MPMX20_00031at 33.140 kb on - strand, within MPMX20_00031at 33.140 kb on - strand, within MPMX20_00031at 33.140 kb on - strand, within MPMX20_00031at 33.140 kb on - strand, within MPMX20_00031at 33.142 kb on + strand, within MPMX20_00031at 33.142 kb on + strand, within MPMX20_00031at 33.142 kb on + strand, within MPMX20_00031at 33.142 kb on + strand, within MPMX20_00031at 33.142 kb on + strand, within MPMX20_00031at 33.142 kb on + strand, within MPMX20_00031at 33.147 kb on + strand, within MPMX20_00031at 33.147 kb on + strand, within MPMX20_00031at 33.150 kb on - strand, within MPMX20_00031at 33.150 kb on - strand, within MPMX20_00031at 33.150 kb on - strand, within MPMX20_00031at 33.150 kb on - strand, within MPMX20_00031at 33.150 kb on - strand, within MPMX20_00031at 33.150 kb on - strand, within MPMX20_00031at 33.154 kb on + strand, within MPMX20_00031at 33.155 kb on - strand, within MPMX20_00031at 33.198 kb on - strand, within MPMX20_00031at 33.240 kb on + strand, within MPMX20_00031at 33.240 kb on + strand, within MPMX20_00031at 33.248 kb on - strand, within MPMX20_00031at 33.404 kb on - strand, within MPMX20_00031at 33.418 kb on + strand, within MPMX20_00031at 33.436 kb on - strand, within MPMX20_00031at 33.464 kb on + strand, within MPMX20_00031at 33.689 kb on + strand, within MPMX20_00032at 33.690 kb on + strand, within MPMX20_00032at 33.710 kb on + strand, within MPMX20_00032at 33.766 kb on + strand, within MPMX20_00032at 33.801 kb on + strand, within MPMX20_00032at 33.809 kb on - strand, within MPMX20_00032at 33.931 kb on + strandat 33.938 kb on + strandat 33.939 kb on - strandat 33.946 kb on - strandat 33.986 kb on + strandat 34.008 kb on + strandat 34.016 kb on - strandat 34.074 kb on - strand, within MPMX20_00033at 34.142 kb on + strand, within MPMX20_00033at 34.142 kb on + strand, within MPMX20_00033at 34.148 kb on - strand, within MPMX20_00033at 34.150 kb on - strand, within MPMX20_00033at 34.150 kb on - strand, within MPMX20_00033at 34.179 kb on + strand, within MPMX20_00033at 34.238 kb on + strand, within MPMX20_00033at 34.238 kb on + strand, within MPMX20_00033at 34.246 kb on - strand, within MPMX20_00033at 34.263 kb on + strand, within MPMX20_00033at 34.271 kb on - strand, within MPMX20_00033at 34.343 kb on + strand, within MPMX20_00033at 34.406 kb on + strand, within MPMX20_00033at 34.422 kb on - strand, within MPMX20_00033at 34.435 kb on - strand, within MPMX20_00033at 34.518 kb on + strand, within MPMX20_00033at 34.518 kb on + strand, within MPMX20_00033at 34.518 kb on + strand, within MPMX20_00033

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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30,957 + MPMX20_00029 0.76 +1.3
30,957 + MPMX20_00029 0.76 +0.9
30,965 - MPMX20_00029 0.78 +0.7
30,994 + MPMX20_00029 0.85 +0.7
31,017 + MPMX20_00029 0.90 +0.6
31,059 + -0.3
31,101 + +0.3
31,107 - -1.3
31,109 - -1.1
31,109 - -0.5
31,109 - -0.3
31,109 - -1.1
31,109 - -0.7
31,114 + +0.3
31,122 - +0.2
31,149 + MPMX20_00030 0.24 +2.9
31,149 + MPMX20_00030 0.24 +0.6
31,163 - MPMX20_00030 0.40 -0.5
31,219 - -1.0
31,258 + -0.1
31,266 - -0.7
31,269 + -0.9
31,282 + -1.1
31,288 - +0.3
31,291 + +1.4
31,291 + +0.0
31,291 + -1.9
31,291 + -0.2
31,291 + +1.8
31,299 - +1.3
31,308 - -1.4
31,317 + -0.4
31,318 + +0.8
31,326 - +0.7
31,353 + +0.0
31,356 - +0.2
31,375 - +0.1
31,410 - +0.3
31,538 + -1.1
31,538 + -0.4
31,538 + -1.5
31,538 + -1.5
31,538 + -0.2
31,538 + +1.5
31,538 + -0.9
31,546 - -0.1
31,546 - -1.2
31,546 - -0.1
31,546 - -0.8
31,546 - -0.9
31,738 + +0.7
31,748 + +0.1
31,761 + +1.5
31,761 + -0.5
31,771 + -0.4
31,842 + +0.3
31,847 + +0.1
31,925 + -0.3
31,947 - -1.0
32,026 + -1.5
32,065 - +0.3
32,128 - MPMX20_00031 0.11 +0.8
32,128 - MPMX20_00031 0.11 +0.7
32,167 - MPMX20_00031 0.13 -0.4
32,190 - MPMX20_00031 0.14 -0.8
32,194 - MPMX20_00031 0.15 -0.2
32,223 - MPMX20_00031 0.16 -0.9
32,228 - MPMX20_00031 0.17 +0.6
32,242 + MPMX20_00031 0.17 -0.4
32,242 + MPMX20_00031 0.17 -0.0
32,260 - MPMX20_00031 0.18 -0.8
32,281 + MPMX20_00031 0.20 -1.1
32,403 - MPMX20_00031 0.27 -2.8
32,516 - MPMX20_00031 0.34 +0.1
32,532 + MPMX20_00031 0.35 -0.9
32,540 - MPMX20_00031 0.35 +0.2
32,540 - MPMX20_00031 0.35 +0.4
32,576 - MPMX20_00031 0.37 -1.6
32,651 + MPMX20_00031 0.42 -0.2
32,723 - MPMX20_00031 0.46 +1.5
32,838 - MPMX20_00031 0.53 -0.6
32,874 - MPMX20_00031 0.55 -0.9
32,876 + MPMX20_00031 0.55 -1.3
32,934 + MPMX20_00031 0.58 +1.8
33,031 - MPMX20_00031 0.64 +1.6
33,066 + MPMX20_00031 0.66 -0.3
33,066 + MPMX20_00031 0.66 +0.1
33,066 + MPMX20_00031 0.66 -0.5
33,066 + MPMX20_00031 0.66 -2.3
33,094 - MPMX20_00031 0.68 -1.0
33,096 - MPMX20_00031 0.68 -0.1
33,116 + MPMX20_00031 0.69 -0.1
33,116 + MPMX20_00031 0.69 -0.2
33,124 - MPMX20_00031 0.70 -3.8
33,132 + MPMX20_00031 0.70 +0.0
33,140 - MPMX20_00031 0.71 -0.3
33,140 - MPMX20_00031 0.71 +1.7
33,140 - MPMX20_00031 0.71 -0.6
33,140 - MPMX20_00031 0.71 +0.5
33,142 + MPMX20_00031 0.71 -1.8
33,142 + MPMX20_00031 0.71 +0.6
33,142 + MPMX20_00031 0.71 +0.8
33,142 + MPMX20_00031 0.71 +0.3
33,142 + MPMX20_00031 0.71 -0.7
33,142 + MPMX20_00031 0.71 +0.3
33,147 + MPMX20_00031 0.71 +0.2
33,147 + MPMX20_00031 0.71 -1.0
33,150 - MPMX20_00031 0.71 -1.6
33,150 - MPMX20_00031 0.71 +0.4
33,150 - MPMX20_00031 0.71 +0.2
33,150 - MPMX20_00031 0.71 -0.4
33,150 - MPMX20_00031 0.71 -0.8
33,150 - MPMX20_00031 0.71 +0.7
33,154 + MPMX20_00031 0.71 -0.4
33,155 - MPMX20_00031 0.71 -0.5
33,198 - MPMX20_00031 0.74 +0.3
33,240 + MPMX20_00031 0.76 -0.9
33,240 + MPMX20_00031 0.76 -1.1
33,248 - MPMX20_00031 0.77 +0.5
33,404 - MPMX20_00031 0.86 -0.7
33,418 + MPMX20_00031 0.87 -0.9
33,436 - MPMX20_00031 0.88 -0.7
33,464 + MPMX20_00031 0.90 -0.1
33,689 + MPMX20_00032 0.17 -1.7
33,690 + MPMX20_00032 0.17 +0.6
33,710 + MPMX20_00032 0.24 +0.1
33,766 + MPMX20_00032 0.44 +2.6
33,801 + MPMX20_00032 0.56 -0.6
33,809 - MPMX20_00032 0.59 -0.6
33,931 + -0.1
33,938 + -1.0
33,939 - -1.1
33,946 - -0.7
33,986 + +0.5
34,008 + +0.9
34,016 - +0.3
34,074 - MPMX20_00033 0.12 -0.3
34,142 + MPMX20_00033 0.24 -0.1
34,142 + MPMX20_00033 0.24 +1.3
34,148 - MPMX20_00033 0.25 -0.5
34,150 - MPMX20_00033 0.25 -1.0
34,150 - MPMX20_00033 0.25 -0.3
34,179 + MPMX20_00033 0.30 +0.1
34,238 + MPMX20_00033 0.40 -0.6
34,238 + MPMX20_00033 0.40 +0.0
34,246 - MPMX20_00033 0.41 -1.2
34,263 + MPMX20_00033 0.44 -0.1
34,271 - MPMX20_00033 0.45 +0.3
34,343 + MPMX20_00033 0.58 +0.9
34,406 + MPMX20_00033 0.68 -0.5
34,422 - MPMX20_00033 0.71 +1.8
34,435 - MPMX20_00033 0.73 -0.2
34,518 + MPMX20_00033 0.87 +0.5
34,518 + MPMX20_00033 0.87 +0.0
34,518 + MPMX20_00033 0.87 -0.3

Or see this region's nucleotide sequence