Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03176 and MPMX20_03177 are separated by 16 nucleotides MPMX20_03177 and MPMX20_03178 are separated by 87 nucleotides
MPMX20_03176: MPMX20_03176 - Phosphotransferase RcsD, at 3,337,112 to 3,339,784
_03176
MPMX20_03177: MPMX20_03177 - Transcriptional regulatory protein RcsB, at 3,339,801 to 3,340,451
_03177
MPMX20_03178: MPMX20_03178 - Sensor histidine kinase RcsC, at 3,340,539 to 3,343,385
_03178
Position (kb)
3339
3340
3341 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3338.812 kb on - strand, within MPMX20_03176 at 3338.830 kb on - strand, within MPMX20_03176 at 3338.852 kb on - strand, within MPMX20_03176 at 3338.873 kb on - strand, within MPMX20_03176 at 3338.889 kb on + strand, within MPMX20_03176 at 3338.897 kb on - strand, within MPMX20_03176 at 3338.923 kb on - strand, within MPMX20_03176 at 3338.930 kb on + strand, within MPMX20_03176 at 3338.949 kb on + strand, within MPMX20_03176 at 3338.965 kb on - strand, within MPMX20_03176 at 3339.003 kb on + strand, within MPMX20_03176 at 3339.011 kb on - strand, within MPMX20_03176 at 3339.039 kb on - strand, within MPMX20_03176 at 3339.045 kb on + strand, within MPMX20_03176 at 3339.046 kb on - strand, within MPMX20_03176 at 3339.053 kb on - strand, within MPMX20_03176 at 3339.053 kb on - strand, within MPMX20_03176 at 3339.136 kb on + strand, within MPMX20_03176 at 3339.144 kb on - strand, within MPMX20_03176 at 3339.202 kb on + strand, within MPMX20_03176 at 3339.221 kb on - strand, within MPMX20_03176 at 3339.278 kb on - strand, within MPMX20_03176 at 3339.278 kb on - strand, within MPMX20_03176 at 3339.313 kb on + strand, within MPMX20_03176 at 3339.321 kb on - strand, within MPMX20_03176 at 3339.363 kb on - strand, within MPMX20_03176 at 3339.390 kb on - strand, within MPMX20_03176 at 3339.406 kb on - strand, within MPMX20_03176 at 3339.406 kb on - strand, within MPMX20_03176 at 3339.406 kb on - strand, within MPMX20_03176 at 3339.436 kb on + strand, within MPMX20_03176 at 3339.436 kb on + strand, within MPMX20_03176 at 3339.444 kb on - strand, within MPMX20_03176 at 3339.478 kb on + strand, within MPMX20_03176 at 3339.563 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.583 kb on + strand at 3339.586 kb on + strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.591 kb on - strand at 3339.640 kb on + strand at 3339.648 kb on - strand at 3339.685 kb on + strand at 3339.763 kb on - strand at 3339.766 kb on + strand at 3339.766 kb on + strand at 3339.795 kb on - strand at 3339.865 kb on + strand at 3339.873 kb on - strand, within MPMX20_03177 at 3339.875 kb on + strand, within MPMX20_03177 at 3339.913 kb on + strand, within MPMX20_03177 at 3339.913 kb on + strand, within MPMX20_03177 at 3339.913 kb on + strand, within MPMX20_03177 at 3339.919 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.921 kb on - strand, within MPMX20_03177 at 3339.929 kb on - strand, within MPMX20_03177 at 3339.971 kb on + strand, within MPMX20_03177 at 3339.971 kb on + strand, within MPMX20_03177 at 3339.979 kb on - strand, within MPMX20_03177 at 3340.001 kb on + strand, within MPMX20_03177 at 3340.027 kb on - strand, within MPMX20_03177 at 3340.169 kb on + strand, within MPMX20_03177 at 3340.280 kb on - strand, within MPMX20_03177 at 3340.288 kb on - strand, within MPMX20_03177 at 3340.420 kb on + strand at 3340.420 kb on + strand at 3340.445 kb on + strand at 3340.595 kb on + strand at 3340.595 kb on + strand at 3340.624 kb on + strand at 3340.722 kb on - strand at 3340.772 kb on - strand at 3340.808 kb on + strand at 3340.864 kb on + strand, within MPMX20_03178 at 3340.995 kb on - strand, within MPMX20_03178 at 3341.104 kb on + strand, within MPMX20_03178 at 3341.112 kb on - strand, within MPMX20_03178 at 3341.301 kb on + strand, within MPMX20_03178 at 3341.301 kb on + strand, within MPMX20_03178 at 3341.306 kb on + strand, within MPMX20_03178 at 3341.319 kb on - strand, within MPMX20_03178 at 3341.397 kb on - strand, within MPMX20_03178
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 3,338,812 - MPMX20_03176 0.64 -1.2 3,338,830 - MPMX20_03176 0.64 -1.0 3,338,852 - MPMX20_03176 0.65 -0.4 3,338,873 - MPMX20_03176 0.66 -0.7 3,338,889 + MPMX20_03176 0.66 -1.0 3,338,897 - MPMX20_03176 0.67 -0.8 3,338,923 - MPMX20_03176 0.68 -2.6 3,338,930 + MPMX20_03176 0.68 -1.7 3,338,949 + MPMX20_03176 0.69 +1.3 3,338,965 - MPMX20_03176 0.69 -0.8 3,339,003 + MPMX20_03176 0.71 -1.2 3,339,011 - MPMX20_03176 0.71 -0.6 3,339,039 - MPMX20_03176 0.72 -0.0 3,339,045 + MPMX20_03176 0.72 -0.3 3,339,046 - MPMX20_03176 0.72 +0.8 3,339,053 - MPMX20_03176 0.73 +0.2 3,339,053 - MPMX20_03176 0.73 -0.4 3,339,136 + MPMX20_03176 0.76 -1.1 3,339,144 - MPMX20_03176 0.76 +2.2 3,339,202 + MPMX20_03176 0.78 +1.1 3,339,221 - MPMX20_03176 0.79 +0.0 3,339,278 - MPMX20_03176 0.81 +0.2 3,339,278 - MPMX20_03176 0.81 -0.9 3,339,313 + MPMX20_03176 0.82 +0.3 3,339,321 - MPMX20_03176 0.83 +0.2 3,339,363 - MPMX20_03176 0.84 +0.9 3,339,390 - MPMX20_03176 0.85 -1.1 3,339,406 - MPMX20_03176 0.86 -0.8 3,339,406 - MPMX20_03176 0.86 -0.6 3,339,406 - MPMX20_03176 0.86 +0.0 3,339,436 + MPMX20_03176 0.87 +1.5 3,339,436 + MPMX20_03176 0.87 +0.3 3,339,444 - MPMX20_03176 0.87 +0.7 3,339,478 + MPMX20_03176 0.89 -1.6 3,339,563 + -0.5 3,339,583 + -1.9 3,339,583 + -0.5 3,339,583 + +0.8 3,339,583 + -0.5 3,339,583 + -1.7 3,339,583 + -1.8 3,339,583 + +0.4 3,339,583 + -0.7 3,339,583 + +0.2 3,339,583 + -0.6 3,339,583 + +0.5 3,339,583 + +0.2 3,339,583 + -1.9 3,339,583 + -1.0 3,339,586 + +0.9 3,339,591 - -1.3 3,339,591 - -0.7 3,339,591 - -2.2 3,339,591 - +0.8 3,339,591 - +0.2 3,339,591 - +0.2 3,339,591 - +0.3 3,339,591 - -0.3 3,339,591 - +1.3 3,339,591 - -0.4 3,339,591 - -1.3 3,339,591 - +0.9 3,339,640 + -0.2 3,339,648 - -0.6 3,339,685 + +0.8 3,339,763 - -1.6 3,339,766 + -1.4 3,339,766 + +0.5 3,339,795 - +0.9 3,339,865 + -0.2 3,339,873 - MPMX20_03177 0.11 -2.0 3,339,875 + MPMX20_03177 0.11 -0.6 3,339,913 + MPMX20_03177 0.17 -0.4 3,339,913 + MPMX20_03177 0.17 -1.8 3,339,913 + MPMX20_03177 0.17 -1.9 3,339,919 - MPMX20_03177 0.18 +1.5 3,339,921 - MPMX20_03177 0.18 -0.5 3,339,921 - MPMX20_03177 0.18 -1.7 3,339,921 - MPMX20_03177 0.18 +0.5 3,339,921 - MPMX20_03177 0.18 -1.1 3,339,921 - MPMX20_03177 0.18 -0.4 3,339,921 - MPMX20_03177 0.18 -1.2 3,339,921 - MPMX20_03177 0.18 -2.4 3,339,921 - MPMX20_03177 0.18 +0.6 3,339,929 - MPMX20_03177 0.20 +0.1 3,339,971 + MPMX20_03177 0.26 +0.9 3,339,971 + MPMX20_03177 0.26 -0.3 3,339,979 - MPMX20_03177 0.27 -1.1 3,340,001 + MPMX20_03177 0.31 -0.1 3,340,027 - MPMX20_03177 0.35 -2.2 3,340,169 + MPMX20_03177 0.57 -0.5 3,340,280 - MPMX20_03177 0.74 -0.8 3,340,288 - MPMX20_03177 0.75 -2.0 3,340,420 + +0.1 3,340,420 + +0.7 3,340,445 + +1.0 3,340,595 + -0.8 3,340,595 + -1.4 3,340,624 + +0.2 3,340,722 - -0.8 3,340,772 - -0.4 3,340,808 + +0.5 3,340,864 + MPMX20_03178 0.11 -0.6 3,340,995 - MPMX20_03178 0.16 -0.2 3,341,104 + MPMX20_03178 0.20 +0.9 3,341,112 - MPMX20_03178 0.20 -0.5 3,341,301 + MPMX20_03178 0.27 -0.1 3,341,301 + MPMX20_03178 0.27 -1.4 3,341,306 + MPMX20_03178 0.27 +0.2 3,341,319 - MPMX20_03178 0.27 -2.1 3,341,397 - MPMX20_03178 0.30 -1.0
Or see this region's nucleotide sequence