Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03177

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03176 and MPMX20_03177 are separated by 16 nucleotidesMPMX20_03177 and MPMX20_03178 are separated by 87 nucleotides MPMX20_03176: MPMX20_03176 - Phosphotransferase RcsD, at 3,337,112 to 3,339,784 _03176 MPMX20_03177: MPMX20_03177 - Transcriptional regulatory protein RcsB, at 3,339,801 to 3,340,451 _03177 MPMX20_03178: MPMX20_03178 - Sensor histidine kinase RcsC, at 3,340,539 to 3,343,385 _03178 Position (kb) 3339 3340 3341Strain fitness (log2 ratio) -2 -1 0 1 2at 3338.812 kb on - strand, within MPMX20_03176at 3338.830 kb on - strand, within MPMX20_03176at 3338.852 kb on - strand, within MPMX20_03176at 3338.873 kb on - strand, within MPMX20_03176at 3338.889 kb on + strand, within MPMX20_03176at 3338.897 kb on - strand, within MPMX20_03176at 3338.923 kb on - strand, within MPMX20_03176at 3338.930 kb on + strand, within MPMX20_03176at 3338.949 kb on + strand, within MPMX20_03176at 3338.965 kb on - strand, within MPMX20_03176at 3339.003 kb on + strand, within MPMX20_03176at 3339.011 kb on - strand, within MPMX20_03176at 3339.039 kb on - strand, within MPMX20_03176at 3339.045 kb on + strand, within MPMX20_03176at 3339.046 kb on - strand, within MPMX20_03176at 3339.053 kb on - strand, within MPMX20_03176at 3339.053 kb on - strand, within MPMX20_03176at 3339.136 kb on + strand, within MPMX20_03176at 3339.144 kb on - strand, within MPMX20_03176at 3339.202 kb on + strand, within MPMX20_03176at 3339.221 kb on - strand, within MPMX20_03176at 3339.278 kb on - strand, within MPMX20_03176at 3339.278 kb on - strand, within MPMX20_03176at 3339.313 kb on + strand, within MPMX20_03176at 3339.321 kb on - strand, within MPMX20_03176at 3339.363 kb on - strand, within MPMX20_03176at 3339.390 kb on - strand, within MPMX20_03176at 3339.406 kb on - strand, within MPMX20_03176at 3339.406 kb on - strand, within MPMX20_03176at 3339.406 kb on - strand, within MPMX20_03176at 3339.436 kb on + strand, within MPMX20_03176at 3339.436 kb on + strand, within MPMX20_03176at 3339.444 kb on - strand, within MPMX20_03176at 3339.478 kb on + strand, within MPMX20_03176at 3339.563 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.583 kb on + strandat 3339.586 kb on + strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.591 kb on - strandat 3339.640 kb on + strandat 3339.648 kb on - strandat 3339.685 kb on + strandat 3339.763 kb on - strandat 3339.766 kb on + strandat 3339.766 kb on + strandat 3339.795 kb on - strandat 3339.865 kb on + strandat 3339.873 kb on - strand, within MPMX20_03177at 3339.875 kb on + strand, within MPMX20_03177at 3339.913 kb on + strand, within MPMX20_03177at 3339.913 kb on + strand, within MPMX20_03177at 3339.913 kb on + strand, within MPMX20_03177at 3339.919 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.921 kb on - strand, within MPMX20_03177at 3339.929 kb on - strand, within MPMX20_03177at 3339.971 kb on + strand, within MPMX20_03177at 3339.971 kb on + strand, within MPMX20_03177at 3339.979 kb on - strand, within MPMX20_03177at 3340.001 kb on + strand, within MPMX20_03177at 3340.027 kb on - strand, within MPMX20_03177at 3340.169 kb on + strand, within MPMX20_03177at 3340.280 kb on - strand, within MPMX20_03177at 3340.288 kb on - strand, within MPMX20_03177at 3340.420 kb on + strandat 3340.420 kb on + strandat 3340.445 kb on + strandat 3340.595 kb on + strandat 3340.595 kb on + strandat 3340.624 kb on + strandat 3340.722 kb on - strandat 3340.772 kb on - strandat 3340.808 kb on + strandat 3340.864 kb on + strand, within MPMX20_03178at 3340.995 kb on - strand, within MPMX20_03178at 3341.104 kb on + strand, within MPMX20_03178at 3341.112 kb on - strand, within MPMX20_03178at 3341.301 kb on + strand, within MPMX20_03178at 3341.301 kb on + strand, within MPMX20_03178at 3341.306 kb on + strand, within MPMX20_03178at 3341.319 kb on - strand, within MPMX20_03178at 3341.397 kb on - strand, within MPMX20_03178

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,338,812 - MPMX20_03176 0.64 -1.2
3,338,830 - MPMX20_03176 0.64 -1.0
3,338,852 - MPMX20_03176 0.65 -0.4
3,338,873 - MPMX20_03176 0.66 -0.7
3,338,889 + MPMX20_03176 0.66 -1.0
3,338,897 - MPMX20_03176 0.67 -0.8
3,338,923 - MPMX20_03176 0.68 -2.6
3,338,930 + MPMX20_03176 0.68 -1.7
3,338,949 + MPMX20_03176 0.69 +1.3
3,338,965 - MPMX20_03176 0.69 -0.8
3,339,003 + MPMX20_03176 0.71 -1.2
3,339,011 - MPMX20_03176 0.71 -0.6
3,339,039 - MPMX20_03176 0.72 -0.0
3,339,045 + MPMX20_03176 0.72 -0.3
3,339,046 - MPMX20_03176 0.72 +0.8
3,339,053 - MPMX20_03176 0.73 +0.2
3,339,053 - MPMX20_03176 0.73 -0.4
3,339,136 + MPMX20_03176 0.76 -1.1
3,339,144 - MPMX20_03176 0.76 +2.2
3,339,202 + MPMX20_03176 0.78 +1.1
3,339,221 - MPMX20_03176 0.79 +0.0
3,339,278 - MPMX20_03176 0.81 +0.2
3,339,278 - MPMX20_03176 0.81 -0.9
3,339,313 + MPMX20_03176 0.82 +0.3
3,339,321 - MPMX20_03176 0.83 +0.2
3,339,363 - MPMX20_03176 0.84 +0.9
3,339,390 - MPMX20_03176 0.85 -1.1
3,339,406 - MPMX20_03176 0.86 -0.8
3,339,406 - MPMX20_03176 0.86 -0.6
3,339,406 - MPMX20_03176 0.86 +0.0
3,339,436 + MPMX20_03176 0.87 +1.5
3,339,436 + MPMX20_03176 0.87 +0.3
3,339,444 - MPMX20_03176 0.87 +0.7
3,339,478 + MPMX20_03176 0.89 -1.6
3,339,563 + -0.5
3,339,583 + -1.9
3,339,583 + -0.5
3,339,583 + +0.8
3,339,583 + -0.5
3,339,583 + -1.7
3,339,583 + -1.8
3,339,583 + +0.4
3,339,583 + -0.7
3,339,583 + +0.2
3,339,583 + -0.6
3,339,583 + +0.5
3,339,583 + +0.2
3,339,583 + -1.9
3,339,583 + -1.0
3,339,586 + +0.9
3,339,591 - -1.3
3,339,591 - -0.7
3,339,591 - -2.2
3,339,591 - +0.8
3,339,591 - +0.2
3,339,591 - +0.2
3,339,591 - +0.3
3,339,591 - -0.3
3,339,591 - +1.3
3,339,591 - -0.4
3,339,591 - -1.3
3,339,591 - +0.9
3,339,640 + -0.2
3,339,648 - -0.6
3,339,685 + +0.8
3,339,763 - -1.6
3,339,766 + -1.4
3,339,766 + +0.5
3,339,795 - +0.9
3,339,865 + -0.2
3,339,873 - MPMX20_03177 0.11 -2.0
3,339,875 + MPMX20_03177 0.11 -0.6
3,339,913 + MPMX20_03177 0.17 -0.4
3,339,913 + MPMX20_03177 0.17 -1.8
3,339,913 + MPMX20_03177 0.17 -1.9
3,339,919 - MPMX20_03177 0.18 +1.5
3,339,921 - MPMX20_03177 0.18 -0.5
3,339,921 - MPMX20_03177 0.18 -1.7
3,339,921 - MPMX20_03177 0.18 +0.5
3,339,921 - MPMX20_03177 0.18 -1.1
3,339,921 - MPMX20_03177 0.18 -0.4
3,339,921 - MPMX20_03177 0.18 -1.2
3,339,921 - MPMX20_03177 0.18 -2.4
3,339,921 - MPMX20_03177 0.18 +0.6
3,339,929 - MPMX20_03177 0.20 +0.1
3,339,971 + MPMX20_03177 0.26 +0.9
3,339,971 + MPMX20_03177 0.26 -0.3
3,339,979 - MPMX20_03177 0.27 -1.1
3,340,001 + MPMX20_03177 0.31 -0.1
3,340,027 - MPMX20_03177 0.35 -2.2
3,340,169 + MPMX20_03177 0.57 -0.5
3,340,280 - MPMX20_03177 0.74 -0.8
3,340,288 - MPMX20_03177 0.75 -2.0
3,340,420 + +0.1
3,340,420 + +0.7
3,340,445 + +1.0
3,340,595 + -0.8
3,340,595 + -1.4
3,340,624 + +0.2
3,340,722 - -0.8
3,340,772 - -0.4
3,340,808 + +0.5
3,340,864 + MPMX20_03178 0.11 -0.6
3,340,995 - MPMX20_03178 0.16 -0.2
3,341,104 + MPMX20_03178 0.20 +0.9
3,341,112 - MPMX20_03178 0.20 -0.5
3,341,301 + MPMX20_03178 0.27 -0.1
3,341,301 + MPMX20_03178 0.27 -1.4
3,341,306 + MPMX20_03178 0.27 +0.2
3,341,319 - MPMX20_03178 0.27 -2.1
3,341,397 - MPMX20_03178 0.30 -1.0

Or see this region's nucleotide sequence