Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04392 and MPMX20_04393 are separated by 145 nucleotides MPMX20_04393 and MPMX20_04394 are separated by 54 nucleotides MPMX20_04394 and MPMX20_04395 are separated by 283 nucleotides
MPMX20_04392: MPMX20_04392 - hypothetical protein, at 4,582,322 to 4,583,602
_04392
MPMX20_04393: MPMX20_04393 - Low-affinity inorganic phosphate transporter 1, at 4,583,748 to 4,585,247
_04393
MPMX20_04394: MPMX20_04394 - Universal stress protein B, at 4,585,302 to 4,585,637
_04394
MPMX20_04395: MPMX20_04395 - Universal stress protein A, at 4,585,921 to 4,586,358
_04395
Position (kb)
4583
4584
4585
4586 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4582.751 kb on - strand, within MPMX20_04392 at 4582.867 kb on - strand, within MPMX20_04392 at 4582.869 kb on + strand, within MPMX20_04392 at 4582.874 kb on - strand, within MPMX20_04392 at 4582.902 kb on + strand, within MPMX20_04392 at 4582.923 kb on + strand, within MPMX20_04392 at 4582.931 kb on - strand, within MPMX20_04392 at 4582.931 kb on - strand, within MPMX20_04392 at 4582.956 kb on - strand, within MPMX20_04392 at 4583.008 kb on - strand, within MPMX20_04392 at 4583.016 kb on - strand, within MPMX20_04392 at 4583.021 kb on - strand, within MPMX20_04392 at 4583.035 kb on + strand, within MPMX20_04392 at 4583.043 kb on - strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.107 kb on - strand, within MPMX20_04392 at 4583.208 kb on + strand, within MPMX20_04392 at 4583.266 kb on + strand, within MPMX20_04392 at 4583.379 kb on + strand, within MPMX20_04392 at 4583.423 kb on - strand, within MPMX20_04392 at 4583.477 kb on - strand at 4583.502 kb on + strand at 4583.510 kb on - strand at 4583.510 kb on - strand at 4583.567 kb on + strand at 4583.567 kb on + strand at 4583.575 kb on - strand at 4583.580 kb on - strand at 4583.699 kb on + strand at 4583.716 kb on + strand at 4583.716 kb on + strand at 4583.724 kb on - strand at 4583.724 kb on - strand at 4583.810 kb on - strand at 4583.819 kb on + strand at 4583.960 kb on - strand, within MPMX20_04393 at 4584.013 kb on + strand, within MPMX20_04393 at 4584.030 kb on + strand, within MPMX20_04393 at 4584.048 kb on - strand, within MPMX20_04393 at 4584.191 kb on - strand, within MPMX20_04393 at 4584.251 kb on - strand, within MPMX20_04393 at 4584.444 kb on - strand, within MPMX20_04393 at 4584.445 kb on + strand, within MPMX20_04393 at 4584.536 kb on + strand, within MPMX20_04393 at 4584.585 kb on - strand, within MPMX20_04393 at 4584.585 kb on - strand, within MPMX20_04393 at 4584.604 kb on + strand, within MPMX20_04393 at 4584.612 kb on - strand, within MPMX20_04393 at 4584.614 kb on + strand, within MPMX20_04393 at 4584.614 kb on + strand, within MPMX20_04393 at 4584.701 kb on + strand, within MPMX20_04393 at 4584.709 kb on - strand, within MPMX20_04393 at 4584.772 kb on + strand, within MPMX20_04393 at 4584.780 kb on - strand, within MPMX20_04393 at 4584.780 kb on - strand, within MPMX20_04393 at 4584.780 kb on - strand, within MPMX20_04393 at 4584.952 kb on + strand, within MPMX20_04393 at 4585.003 kb on + strand, within MPMX20_04393 at 4585.013 kb on + strand, within MPMX20_04393 at 4585.013 kb on + strand, within MPMX20_04393 at 4585.013 kb on + strand, within MPMX20_04393 at 4585.013 kb on + strand, within MPMX20_04393 at 4585.013 kb on + strand, within MPMX20_04393 at 4585.013 kb on + strand, within MPMX20_04393 at 4585.021 kb on - strand, within MPMX20_04393 at 4585.021 kb on - strand, within MPMX20_04393 at 4585.028 kb on + strand, within MPMX20_04393 at 4585.048 kb on - strand, within MPMX20_04393 at 4585.049 kb on - strand, within MPMX20_04393 at 4585.087 kb on + strand, within MPMX20_04393 at 4585.105 kb on - strand at 4585.322 kb on - strand at 4585.332 kb on + strand at 4585.335 kb on - strand at 4585.340 kb on - strand, within MPMX20_04394 at 4585.345 kb on - strand, within MPMX20_04394 at 4585.350 kb on - strand, within MPMX20_04394 at 4585.359 kb on + strand, within MPMX20_04394 at 4585.367 kb on - strand, within MPMX20_04394 at 4585.423 kb on + strand, within MPMX20_04394 at 4585.431 kb on - strand, within MPMX20_04394 at 4585.440 kb on + strand, within MPMX20_04394 at 4585.448 kb on - strand, within MPMX20_04394 at 4585.475 kb on + strand, within MPMX20_04394 at 4585.494 kb on - strand, within MPMX20_04394 at 4585.504 kb on + strand, within MPMX20_04394 at 4585.547 kb on - strand, within MPMX20_04394 at 4585.547 kb on - strand, within MPMX20_04394 at 4585.551 kb on - strand, within MPMX20_04394 at 4585.658 kb on - strand at 4585.671 kb on + strand at 4585.671 kb on + strand at 4585.679 kb on - strand at 4585.687 kb on + strand at 4585.687 kb on + strand at 4585.687 kb on + strand at 4585.689 kb on + strand at 4585.697 kb on - strand at 4585.697 kb on - strand at 4585.774 kb on + strand at 4585.774 kb on + strand at 4585.782 kb on - strand at 4585.782 kb on - strand at 4585.782 kb on - strand at 4585.806 kb on + strand at 4585.806 kb on + strand at 4585.806 kb on + strand at 4585.830 kb on - strand at 4585.864 kb on + strand at 4585.911 kb on + strand at 4585.911 kb on + strand at 4585.911 kb on + strand at 4585.911 kb on + strand at 4585.911 kb on + strand at 4585.911 kb on + strand at 4585.919 kb on - strand at 4585.919 kb on - strand at 4585.919 kb on - strand at 4585.919 kb on - strand at 4585.919 kb on - strand at 4585.919 kb on - strand at 4585.975 kb on - strand, within MPMX20_04395 at 4585.975 kb on - strand, within MPMX20_04395 at 4585.975 kb on - strand, within MPMX20_04395 at 4586.004 kb on + strand, within MPMX20_04395 at 4586.004 kb on + strand, within MPMX20_04395 at 4586.055 kb on + strand, within MPMX20_04395 at 4586.055 kb on + strand, within MPMX20_04395 at 4586.060 kb on + strand, within MPMX20_04395 at 4586.063 kb on - strand, within MPMX20_04395 at 4586.063 kb on - strand, within MPMX20_04395 at 4586.063 kb on - strand, within MPMX20_04395 at 4586.073 kb on - strand, within MPMX20_04395 at 4586.078 kb on - strand, within MPMX20_04395 at 4586.082 kb on + strand, within MPMX20_04395 at 4586.113 kb on - strand, within MPMX20_04395 at 4586.121 kb on - strand, within MPMX20_04395 at 4586.127 kb on - strand, within MPMX20_04395 at 4586.128 kb on - strand, within MPMX20_04395 at 4586.170 kb on + strand, within MPMX20_04395 at 4586.193 kb on + strand, within MPMX20_04395 at 4586.193 kb on + strand, within MPMX20_04395 at 4586.207 kb on - strand, within MPMX20_04395 at 4586.246 kb on - strand, within MPMX20_04395
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,582,751 - MPMX20_04392 0.33 -0.2 4,582,867 - MPMX20_04392 0.43 +0.1 4,582,869 + MPMX20_04392 0.43 -1.5 4,582,874 - MPMX20_04392 0.43 -1.1 4,582,902 + MPMX20_04392 0.45 +1.1 4,582,923 + MPMX20_04392 0.47 +0.7 4,582,931 - MPMX20_04392 0.48 +0.1 4,582,931 - MPMX20_04392 0.48 -1.5 4,582,956 - MPMX20_04392 0.49 -0.2 4,583,008 - MPMX20_04392 0.54 +0.7 4,583,016 - MPMX20_04392 0.54 -0.2 4,583,021 - MPMX20_04392 0.55 +0.6 4,583,035 + MPMX20_04392 0.56 +0.7 4,583,043 - MPMX20_04392 0.56 +2.5 4,583,094 + MPMX20_04392 0.60 +0.8 4,583,094 + MPMX20_04392 0.60 -0.3 4,583,094 + MPMX20_04392 0.60 -0.6 4,583,094 + MPMX20_04392 0.60 +1.3 4,583,094 + MPMX20_04392 0.60 +0.5 4,583,102 - MPMX20_04392 0.61 -0.5 4,583,102 - MPMX20_04392 0.61 +0.1 4,583,102 - MPMX20_04392 0.61 +0.1 4,583,102 - MPMX20_04392 0.61 +1.5 4,583,107 - MPMX20_04392 0.61 -0.6 4,583,208 + MPMX20_04392 0.69 +0.8 4,583,266 + MPMX20_04392 0.74 -1.0 4,583,379 + MPMX20_04392 0.83 +1.5 4,583,423 - MPMX20_04392 0.86 -0.5 4,583,477 - -0.5 4,583,502 + +0.3 4,583,510 - -1.2 4,583,510 - +2.3 4,583,567 + -0.4 4,583,567 + -0.3 4,583,575 - +1.1 4,583,580 - -1.2 4,583,699 + -1.5 4,583,716 + -1.4 4,583,716 + -1.1 4,583,724 - -0.1 4,583,724 - +0.1 4,583,810 - +0.1 4,583,819 + -3.0 4,583,960 - MPMX20_04393 0.14 +0.1 4,584,013 + MPMX20_04393 0.18 -2.4 4,584,030 + MPMX20_04393 0.19 -1.8 4,584,048 - MPMX20_04393 0.20 -0.9 4,584,191 - MPMX20_04393 0.30 -1.8 4,584,251 - MPMX20_04393 0.34 +1.3 4,584,444 - MPMX20_04393 0.46 +0.1 4,584,445 + MPMX20_04393 0.46 -1.7 4,584,536 + MPMX20_04393 0.53 -1.8 4,584,585 - MPMX20_04393 0.56 -1.2 4,584,585 - MPMX20_04393 0.56 -0.7 4,584,604 + MPMX20_04393 0.57 -1.6 4,584,612 - MPMX20_04393 0.58 +0.3 4,584,614 + MPMX20_04393 0.58 -1.7 4,584,614 + MPMX20_04393 0.58 +1.4 4,584,701 + MPMX20_04393 0.64 -1.2 4,584,709 - MPMX20_04393 0.64 +1.5 4,584,772 + MPMX20_04393 0.68 -0.9 4,584,780 - MPMX20_04393 0.69 +1.1 4,584,780 - MPMX20_04393 0.69 -0.7 4,584,780 - MPMX20_04393 0.69 +0.1 4,584,952 + MPMX20_04393 0.80 -0.0 4,585,003 + MPMX20_04393 0.84 -0.7 4,585,013 + MPMX20_04393 0.84 -0.2 4,585,013 + MPMX20_04393 0.84 +0.0 4,585,013 + MPMX20_04393 0.84 +0.5 4,585,013 + MPMX20_04393 0.84 -1.3 4,585,013 + MPMX20_04393 0.84 -1.1 4,585,013 + MPMX20_04393 0.84 -0.7 4,585,021 - MPMX20_04393 0.85 -1.2 4,585,021 - MPMX20_04393 0.85 -1.2 4,585,028 + MPMX20_04393 0.85 -2.6 4,585,048 - MPMX20_04393 0.87 -1.8 4,585,049 - MPMX20_04393 0.87 -1.1 4,585,087 + MPMX20_04393 0.89 +0.1 4,585,105 - +1.1 4,585,322 - +1.6 4,585,332 + -1.5 4,585,335 - +0.1 4,585,340 - MPMX20_04394 0.11 -0.6 4,585,345 - MPMX20_04394 0.13 +1.2 4,585,350 - MPMX20_04394 0.14 +1.2 4,585,359 + MPMX20_04394 0.17 +0.3 4,585,367 - MPMX20_04394 0.19 -0.1 4,585,423 + MPMX20_04394 0.36 +0.3 4,585,431 - MPMX20_04394 0.38 +0.9 4,585,440 + MPMX20_04394 0.41 +0.7 4,585,448 - MPMX20_04394 0.43 -0.1 4,585,475 + MPMX20_04394 0.51 -0.4 4,585,494 - MPMX20_04394 0.57 -0.3 4,585,504 + MPMX20_04394 0.60 -0.4 4,585,547 - MPMX20_04394 0.73 -0.7 4,585,547 - MPMX20_04394 0.73 +1.4 4,585,551 - MPMX20_04394 0.74 -0.0 4,585,658 - +0.3 4,585,671 + +1.3 4,585,671 + +0.9 4,585,679 - +0.7 4,585,687 + +0.7 4,585,687 + +0.3 4,585,687 + -0.4 4,585,689 + -0.6 4,585,697 - +0.2 4,585,697 - +0.8 4,585,774 + +0.5 4,585,774 + -1.1 4,585,782 - -0.8 4,585,782 - +1.4 4,585,782 - -0.3 4,585,806 + -0.6 4,585,806 + -0.5 4,585,806 + +0.0 4,585,830 - -0.6 4,585,864 + +0.5 4,585,911 + +0.8 4,585,911 + +2.8 4,585,911 + +2.5 4,585,911 + -0.9 4,585,911 + -2.4 4,585,911 + +1.1 4,585,919 - -0.3 4,585,919 - +1.3 4,585,919 - -1.4 4,585,919 - -0.9 4,585,919 - -2.0 4,585,919 - -1.3 4,585,975 - MPMX20_04395 0.12 -1.2 4,585,975 - MPMX20_04395 0.12 +0.9 4,585,975 - MPMX20_04395 0.12 -0.2 4,586,004 + MPMX20_04395 0.19 +0.1 4,586,004 + MPMX20_04395 0.19 -0.2 4,586,055 + MPMX20_04395 0.31 +0.5 4,586,055 + MPMX20_04395 0.31 +0.2 4,586,060 + MPMX20_04395 0.32 +0.2 4,586,063 - MPMX20_04395 0.32 -2.1 4,586,063 - MPMX20_04395 0.32 +0.3 4,586,063 - MPMX20_04395 0.32 +0.3 4,586,073 - MPMX20_04395 0.35 -1.1 4,586,078 - MPMX20_04395 0.36 -1.2 4,586,082 + MPMX20_04395 0.37 +0.5 4,586,113 - MPMX20_04395 0.44 -0.8 4,586,121 - MPMX20_04395 0.46 -0.9 4,586,127 - MPMX20_04395 0.47 -1.8 4,586,128 - MPMX20_04395 0.47 -0.8 4,586,170 + MPMX20_04395 0.57 +0.7 4,586,193 + MPMX20_04395 0.62 +0.9 4,586,193 + MPMX20_04395 0.62 +0.8 4,586,207 - MPMX20_04395 0.65 -0.5 4,586,246 - MPMX20_04395 0.74 +0.4
Or see this region's nucleotide sequence