Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03464

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03463 and MPMX20_03464 are separated by 131 nucleotidesMPMX20_03464 and MPMX20_03465 are separated by 267 nucleotidesMPMX20_03465 and MPMX20_03466 are separated by 258 nucleotides MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800 _03463 MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669 _03464 MPMX20_03465: MPMX20_03465 - Ribosome-associated inhibitor A, at 3,656,937 to 3,657,278 _03465 MPMX20_03466: MPMX20_03466 - Bifunctional chorismate mutase/prephenate dehydratase, at 3,657,537 to 3,658,697 _03466 Position (kb) 3655 3656 3657Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3654.959 kb on - strand, within MPMX20_03463at 3654.980 kb on + strand, within MPMX20_03463at 3654.997 kb on + strand, within MPMX20_03463at 3655.040 kb on + strand, within MPMX20_03463at 3655.040 kb on + strand, within MPMX20_03463at 3655.040 kb on + strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.048 kb on - strand, within MPMX20_03463at 3655.052 kb on + strand, within MPMX20_03463at 3655.093 kb on + strand, within MPMX20_03463at 3655.101 kb on - strand, within MPMX20_03463at 3655.214 kb on + strand, within MPMX20_03463at 3655.231 kb on + strand, within MPMX20_03463at 3655.333 kb on + strand, within MPMX20_03463at 3655.333 kb on + strand, within MPMX20_03463at 3655.333 kb on + strand, within MPMX20_03463at 3655.341 kb on - strand, within MPMX20_03463at 3655.371 kb on - strand, within MPMX20_03463at 3655.371 kb on - strand, within MPMX20_03463at 3655.379 kb on + strand, within MPMX20_03463at 3655.456 kb on - strand, within MPMX20_03463at 3655.525 kb on + strand, within MPMX20_03463at 3655.581 kb on - strand, within MPMX20_03463at 3655.682 kb on - strand, within MPMX20_03463at 3655.740 kb on - strandat 3655.744 kb on + strandat 3655.753 kb on + strandat 3655.772 kb on + strandat 3655.782 kb on + strandat 3655.782 kb on + strandat 3655.782 kb on + strandat 3655.782 kb on + strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.790 kb on - strandat 3655.796 kb on + strandat 3655.826 kb on + strandat 3655.850 kb on - strandat 3655.850 kb on - strandat 3656.597 kb on + strandat 3656.629 kb on - strandat 3656.629 kb on - strandat 3656.740 kb on + strandat 3656.757 kb on - strandat 3656.807 kb on + strandat 3656.963 kb on + strandat 3657.033 kb on + strand, within MPMX20_03465at 3657.049 kb on + strand, within MPMX20_03465at 3657.052 kb on - strand, within MPMX20_03465at 3657.066 kb on - strand, within MPMX20_03465at 3657.067 kb on - strand, within MPMX20_03465at 3657.075 kb on + strand, within MPMX20_03465at 3657.101 kb on - strand, within MPMX20_03465at 3657.203 kb on + strand, within MPMX20_03465at 3657.218 kb on - strand, within MPMX20_03465at 3657.218 kb on - strand, within MPMX20_03465at 3657.218 kb on - strand, within MPMX20_03465at 3657.251 kb on - strandat 3657.342 kb on + strandat 3657.353 kb on + strandat 3657.403 kb on - strandat 3657.424 kb on + strandat 3657.473 kb on + strandat 3657.481 kb on - strandat 3657.481 kb on - strandat 3657.481 kb on - strandat 3657.521 kb on + strandat 3657.528 kb on + strandat 3657.533 kb on + strandat 3657.551 kb on + strandat 3657.551 kb on + strandat 3657.564 kb on - strandat 3657.570 kb on + strandat 3657.616 kb on - strandat 3657.616 kb on - strandat 3657.619 kb on - strandat 3657.669 kb on - strand, within MPMX20_03466

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
3,654,959 - MPMX20_03463 0.14 -1.4
3,654,980 + MPMX20_03463 0.16 -1.3
3,654,997 + MPMX20_03463 0.18 -1.7
3,655,040 + MPMX20_03463 0.22 -1.2
3,655,040 + MPMX20_03463 0.22 -2.4
3,655,040 + MPMX20_03463 0.22 -1.4
3,655,048 - MPMX20_03463 0.23 -2.7
3,655,048 - MPMX20_03463 0.23 +0.5
3,655,048 - MPMX20_03463 0.23 -0.9
3,655,048 - MPMX20_03463 0.23 -1.6
3,655,052 + MPMX20_03463 0.24 -2.2
3,655,093 + MPMX20_03463 0.28 -3.0
3,655,101 - MPMX20_03463 0.29 -1.1
3,655,214 + MPMX20_03463 0.40 -2.3
3,655,231 + MPMX20_03463 0.42 -3.1
3,655,333 + MPMX20_03463 0.52 -0.4
3,655,333 + MPMX20_03463 0.52 -2.1
3,655,333 + MPMX20_03463 0.52 -1.4
3,655,341 - MPMX20_03463 0.53 -1.3
3,655,371 - MPMX20_03463 0.56 -1.2
3,655,371 - MPMX20_03463 0.56 +1.1
3,655,379 + MPMX20_03463 0.57 -1.9
3,655,456 - MPMX20_03463 0.65 -1.4
3,655,525 + MPMX20_03463 0.72 -0.9
3,655,581 - MPMX20_03463 0.78 +0.1
3,655,682 - MPMX20_03463 0.88 -1.6
3,655,740 - +0.3
3,655,744 + -2.1
3,655,753 + -0.0
3,655,772 + -1.8
3,655,782 + -1.7
3,655,782 + +0.1
3,655,782 + +0.6
3,655,782 + -0.0
3,655,790 - -2.2
3,655,790 - +0.7
3,655,790 - +0.6
3,655,790 - -3.0
3,655,790 - -1.7
3,655,796 + +0.4
3,655,826 + -1.9
3,655,850 - -0.5
3,655,850 - -0.4
3,656,597 + +0.6
3,656,629 - +0.1
3,656,629 - -1.2
3,656,740 + +0.5
3,656,757 - -0.1
3,656,807 + +1.5
3,656,963 + -1.3
3,657,033 + MPMX20_03465 0.28 +0.7
3,657,049 + MPMX20_03465 0.33 +2.1
3,657,052 - MPMX20_03465 0.34 +0.0
3,657,066 - MPMX20_03465 0.38 +1.6
3,657,067 - MPMX20_03465 0.38 -0.3
3,657,075 + MPMX20_03465 0.40 +3.1
3,657,101 - MPMX20_03465 0.48 +0.0
3,657,203 + MPMX20_03465 0.78 +1.0
3,657,218 - MPMX20_03465 0.82 -0.6
3,657,218 - MPMX20_03465 0.82 -0.9
3,657,218 - MPMX20_03465 0.82 -1.4
3,657,251 - +1.3
3,657,342 + -2.2
3,657,353 + -0.9
3,657,403 - -1.6
3,657,424 + -0.2
3,657,473 + -0.1
3,657,481 - -2.0
3,657,481 - -4.8
3,657,481 - -4.7
3,657,521 + -0.6
3,657,528 + +1.9
3,657,533 + -1.5
3,657,551 + -2.7
3,657,551 + -1.6
3,657,564 - -4.0
3,657,570 + -0.6
3,657,616 - -2.9
3,657,616 - -0.9
3,657,619 - -3.5
3,657,669 - MPMX20_03466 0.11 -2.8

Or see this region's nucleotide sequence