Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03463 and MPMX20_03464 are separated by 131 nucleotides MPMX20_03464 and MPMX20_03465 are separated by 267 nucleotides MPMX20_03465 and MPMX20_03466 are separated by 258 nucleotides
MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800
_03463
MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669
_03464
MPMX20_03465: MPMX20_03465 - Ribosome-associated inhibitor A, at 3,656,937 to 3,657,278
_03465
MPMX20_03466: MPMX20_03466 - Bifunctional chorismate mutase/prephenate dehydratase, at 3,657,537 to 3,658,697
_03466
Position (kb)
3655
3656
3657 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3654.959 kb on - strand, within MPMX20_03463 at 3654.980 kb on + strand, within MPMX20_03463 at 3654.997 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.052 kb on + strand, within MPMX20_03463 at 3655.093 kb on + strand, within MPMX20_03463 at 3655.101 kb on - strand, within MPMX20_03463 at 3655.214 kb on + strand, within MPMX20_03463 at 3655.231 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.341 kb on - strand, within MPMX20_03463 at 3655.371 kb on - strand, within MPMX20_03463 at 3655.371 kb on - strand, within MPMX20_03463 at 3655.379 kb on + strand, within MPMX20_03463 at 3655.456 kb on - strand, within MPMX20_03463 at 3655.525 kb on + strand, within MPMX20_03463 at 3655.581 kb on - strand, within MPMX20_03463 at 3655.682 kb on - strand, within MPMX20_03463 at 3655.740 kb on - strand at 3655.744 kb on + strand at 3655.753 kb on + strand at 3655.772 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.796 kb on + strand at 3655.826 kb on + strand at 3655.850 kb on - strand at 3655.850 kb on - strand at 3656.597 kb on + strand at 3656.629 kb on - strand at 3656.629 kb on - strand at 3656.740 kb on + strand at 3656.757 kb on - strand at 3656.807 kb on + strand at 3656.963 kb on + strand at 3657.033 kb on + strand, within MPMX20_03465 at 3657.049 kb on + strand, within MPMX20_03465 at 3657.052 kb on - strand, within MPMX20_03465 at 3657.066 kb on - strand, within MPMX20_03465 at 3657.067 kb on - strand, within MPMX20_03465 at 3657.075 kb on + strand, within MPMX20_03465 at 3657.101 kb on - strand, within MPMX20_03465 at 3657.203 kb on + strand, within MPMX20_03465 at 3657.218 kb on - strand, within MPMX20_03465 at 3657.218 kb on - strand, within MPMX20_03465 at 3657.218 kb on - strand, within MPMX20_03465 at 3657.251 kb on - strand at 3657.342 kb on + strand at 3657.353 kb on + strand at 3657.403 kb on - strand at 3657.424 kb on + strand at 3657.473 kb on + strand at 3657.481 kb on - strand at 3657.481 kb on - strand at 3657.481 kb on - strand at 3657.521 kb on + strand at 3657.528 kb on + strand at 3657.533 kb on + strand at 3657.551 kb on + strand at 3657.551 kb on + strand at 3657.564 kb on - strand at 3657.570 kb on + strand at 3657.616 kb on - strand at 3657.616 kb on - strand at 3657.619 kb on - strand at 3657.669 kb on - strand, within MPMX20_03466
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,654,959 - MPMX20_03463 0.14 -1.4 3,654,980 + MPMX20_03463 0.16 -1.3 3,654,997 + MPMX20_03463 0.18 -1.7 3,655,040 + MPMX20_03463 0.22 -1.2 3,655,040 + MPMX20_03463 0.22 -2.4 3,655,040 + MPMX20_03463 0.22 -1.4 3,655,048 - MPMX20_03463 0.23 -2.7 3,655,048 - MPMX20_03463 0.23 +0.5 3,655,048 - MPMX20_03463 0.23 -0.9 3,655,048 - MPMX20_03463 0.23 -1.6 3,655,052 + MPMX20_03463 0.24 -2.2 3,655,093 + MPMX20_03463 0.28 -3.0 3,655,101 - MPMX20_03463 0.29 -1.1 3,655,214 + MPMX20_03463 0.40 -2.3 3,655,231 + MPMX20_03463 0.42 -3.1 3,655,333 + MPMX20_03463 0.52 -0.4 3,655,333 + MPMX20_03463 0.52 -2.1 3,655,333 + MPMX20_03463 0.52 -1.4 3,655,341 - MPMX20_03463 0.53 -1.3 3,655,371 - MPMX20_03463 0.56 -1.2 3,655,371 - MPMX20_03463 0.56 +1.1 3,655,379 + MPMX20_03463 0.57 -1.9 3,655,456 - MPMX20_03463 0.65 -1.4 3,655,525 + MPMX20_03463 0.72 -0.9 3,655,581 - MPMX20_03463 0.78 +0.1 3,655,682 - MPMX20_03463 0.88 -1.6 3,655,740 - +0.3 3,655,744 + -2.1 3,655,753 + -0.0 3,655,772 + -1.8 3,655,782 + -1.7 3,655,782 + +0.1 3,655,782 + +0.6 3,655,782 + -0.0 3,655,790 - -2.2 3,655,790 - +0.7 3,655,790 - +0.6 3,655,790 - -3.0 3,655,790 - -1.7 3,655,796 + +0.4 3,655,826 + -1.9 3,655,850 - -0.5 3,655,850 - -0.4 3,656,597 + +0.6 3,656,629 - +0.1 3,656,629 - -1.2 3,656,740 + +0.5 3,656,757 - -0.1 3,656,807 + +1.5 3,656,963 + -1.3 3,657,033 + MPMX20_03465 0.28 +0.7 3,657,049 + MPMX20_03465 0.33 +2.1 3,657,052 - MPMX20_03465 0.34 +0.0 3,657,066 - MPMX20_03465 0.38 +1.6 3,657,067 - MPMX20_03465 0.38 -0.3 3,657,075 + MPMX20_03465 0.40 +3.1 3,657,101 - MPMX20_03465 0.48 +0.0 3,657,203 + MPMX20_03465 0.78 +1.0 3,657,218 - MPMX20_03465 0.82 -0.6 3,657,218 - MPMX20_03465 0.82 -0.9 3,657,218 - MPMX20_03465 0.82 -1.4 3,657,251 - +1.3 3,657,342 + -2.2 3,657,353 + -0.9 3,657,403 - -1.6 3,657,424 + -0.2 3,657,473 + -0.1 3,657,481 - -2.0 3,657,481 - -4.8 3,657,481 - -4.7 3,657,521 + -0.6 3,657,528 + +1.9 3,657,533 + -1.5 3,657,551 + -2.7 3,657,551 + -1.6 3,657,564 - -4.0 3,657,570 + -0.6 3,657,616 - -2.9 3,657,616 - -0.9 3,657,619 - -3.5 3,657,669 - MPMX20_03466 0.11 -2.8
Or see this region's nucleotide sequence