Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03195

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03193 and MPMX20_03194 are separated by 11 nucleotidesMPMX20_03194 and MPMX20_03195 are separated by 11 nucleotidesMPMX20_03195 and MPMX20_03196 are separated by 0 nucleotides MPMX20_03193: MPMX20_03193 - hypothetical protein, at 3,362,062 to 3,363,042 _03193 MPMX20_03194: MPMX20_03194 - hypothetical protein, at 3,363,054 to 3,363,485 _03194 MPMX20_03195: MPMX20_03195 - hypothetical protein, at 3,363,497 to 3,365,011 _03195 MPMX20_03196: MPMX20_03196 - 2-succinylbenzoate--CoA ligase, at 3,365,012 to 3,366,373 _03196 Position (kb) 3363 3364 3365 3366Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3362.561 kb on - strand, within MPMX20_03193at 3362.593 kb on - strand, within MPMX20_03193at 3362.594 kb on - strand, within MPMX20_03193at 3362.801 kb on + strand, within MPMX20_03193at 3362.806 kb on + strand, within MPMX20_03193at 3362.808 kb on - strand, within MPMX20_03193at 3362.809 kb on - strand, within MPMX20_03193at 3362.809 kb on - strand, within MPMX20_03193at 3362.814 kb on - strand, within MPMX20_03193at 3362.843 kb on + strand, within MPMX20_03193at 3362.851 kb on - strand, within MPMX20_03193at 3362.894 kb on + strand, within MPMX20_03193at 3362.937 kb on - strand, within MPMX20_03193at 3362.943 kb on + strand, within MPMX20_03193at 3363.015 kb on + strandat 3363.015 kb on + strandat 3363.022 kb on + strandat 3363.022 kb on + strandat 3363.023 kb on - strandat 3363.097 kb on - strandat 3363.147 kb on - strand, within MPMX20_03194at 3363.155 kb on + strand, within MPMX20_03194at 3363.218 kb on - strand, within MPMX20_03194at 3363.261 kb on - strand, within MPMX20_03194at 3363.368 kb on + strand, within MPMX20_03194at 3363.376 kb on - strand, within MPMX20_03194at 3363.432 kb on + strand, within MPMX20_03194at 3363.450 kb on + strandat 3363.458 kb on - strandat 3363.505 kb on - strandat 3363.609 kb on + strandat 3363.617 kb on - strandat 3363.778 kb on - strand, within MPMX20_03195at 3363.822 kb on + strand, within MPMX20_03195at 3363.905 kb on - strand, within MPMX20_03195at 3363.905 kb on - strand, within MPMX20_03195at 3363.907 kb on + strand, within MPMX20_03195at 3364.019 kb on + strand, within MPMX20_03195at 3364.029 kb on + strand, within MPMX20_03195at 3364.029 kb on + strand, within MPMX20_03195at 3364.034 kb on + strand, within MPMX20_03195at 3364.037 kb on - strand, within MPMX20_03195at 3364.037 kb on - strand, within MPMX20_03195at 3364.082 kb on + strand, within MPMX20_03195at 3364.082 kb on + strand, within MPMX20_03195at 3364.082 kb on + strand, within MPMX20_03195at 3364.082 kb on + strand, within MPMX20_03195at 3364.090 kb on - strand, within MPMX20_03195at 3364.090 kb on - strand, within MPMX20_03195at 3364.090 kb on - strand, within MPMX20_03195at 3364.092 kb on + strand, within MPMX20_03195at 3364.102 kb on + strand, within MPMX20_03195at 3364.130 kb on - strand, within MPMX20_03195at 3364.131 kb on + strand, within MPMX20_03195at 3364.141 kb on + strand, within MPMX20_03195at 3364.227 kb on + strand, within MPMX20_03195at 3364.246 kb on + strand, within MPMX20_03195at 3364.246 kb on + strand, within MPMX20_03195at 3364.254 kb on - strand, within MPMX20_03195at 3364.308 kb on - strand, within MPMX20_03195at 3364.426 kb on + strand, within MPMX20_03195at 3364.461 kb on + strand, within MPMX20_03195at 3364.469 kb on - strand, within MPMX20_03195at 3364.503 kb on - strand, within MPMX20_03195at 3364.516 kb on + strand, within MPMX20_03195at 3364.516 kb on + strand, within MPMX20_03195at 3364.524 kb on - strand, within MPMX20_03195at 3364.565 kb on + strand, within MPMX20_03195at 3364.752 kb on - strand, within MPMX20_03195at 3364.763 kb on + strand, within MPMX20_03195at 3364.764 kb on - strand, within MPMX20_03195at 3364.778 kb on - strand, within MPMX20_03195at 3364.778 kb on - strand, within MPMX20_03195at 3364.900 kb on - strandat 3364.900 kb on - strandat 3364.966 kb on - strandat 3364.997 kb on + strandat 3365.068 kb on - strandat 3365.176 kb on + strand, within MPMX20_03196at 3365.184 kb on - strand, within MPMX20_03196at 3365.265 kb on + strand, within MPMX20_03196at 3365.283 kb on - strand, within MPMX20_03196at 3365.283 kb on - strand, within MPMX20_03196at 3365.675 kb on + strand, within MPMX20_03196at 3365.682 kb on - strand, within MPMX20_03196at 3365.710 kb on + strand, within MPMX20_03196at 3365.729 kb on + strand, within MPMX20_03196at 3365.729 kb on + strand, within MPMX20_03196at 3365.737 kb on - strand, within MPMX20_03196at 3365.788 kb on + strand, within MPMX20_03196at 3365.849 kb on + strand, within MPMX20_03196at 3365.915 kb on + strand, within MPMX20_03196at 3365.915 kb on + strand, within MPMX20_03196at 3365.915 kb on + strand, within MPMX20_03196at 3365.923 kb on - strand, within MPMX20_03196at 3365.923 kb on - strand, within MPMX20_03196at 3365.928 kb on + strand, within MPMX20_03196at 3365.943 kb on + strand, within MPMX20_03196at 3366.003 kb on - strand, within MPMX20_03196at 3366.003 kb on - strand, within MPMX20_03196

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,362,561 - MPMX20_03193 0.51 -0.1
3,362,593 - MPMX20_03193 0.54 -0.4
3,362,594 - MPMX20_03193 0.54 -0.7
3,362,801 + MPMX20_03193 0.75 +0.8
3,362,806 + MPMX20_03193 0.76 -2.1
3,362,808 - MPMX20_03193 0.76 -1.3
3,362,809 - MPMX20_03193 0.76 +0.6
3,362,809 - MPMX20_03193 0.76 +0.3
3,362,814 - MPMX20_03193 0.77 +0.6
3,362,843 + MPMX20_03193 0.80 -0.7
3,362,851 - MPMX20_03193 0.80 -0.1
3,362,894 + MPMX20_03193 0.85 +1.2
3,362,937 - MPMX20_03193 0.89 +1.4
3,362,943 + MPMX20_03193 0.90 -0.5
3,363,015 + -0.7
3,363,015 + -2.6
3,363,022 + -0.8
3,363,022 + -0.3
3,363,023 - -0.6
3,363,097 - +0.7
3,363,147 - MPMX20_03194 0.22 +0.3
3,363,155 + MPMX20_03194 0.23 -0.8
3,363,218 - MPMX20_03194 0.38 +1.0
3,363,261 - MPMX20_03194 0.48 +0.2
3,363,368 + MPMX20_03194 0.73 -0.2
3,363,376 - MPMX20_03194 0.75 +0.3
3,363,432 + MPMX20_03194 0.88 -1.0
3,363,450 + -0.2
3,363,458 - -0.1
3,363,505 - +2.5
3,363,609 + -0.5
3,363,617 - +3.2
3,363,778 - MPMX20_03195 0.19 +0.8
3,363,822 + MPMX20_03195 0.21 +0.2
3,363,905 - MPMX20_03195 0.27 +0.3
3,363,905 - MPMX20_03195 0.27 +0.8
3,363,907 + MPMX20_03195 0.27 -1.5
3,364,019 + MPMX20_03195 0.34 -0.3
3,364,029 + MPMX20_03195 0.35 +0.8
3,364,029 + MPMX20_03195 0.35 +1.4
3,364,034 + MPMX20_03195 0.35 -0.6
3,364,037 - MPMX20_03195 0.36 +5.0
3,364,037 - MPMX20_03195 0.36 +0.3
3,364,082 + MPMX20_03195 0.39 -0.6
3,364,082 + MPMX20_03195 0.39 +1.7
3,364,082 + MPMX20_03195 0.39 +0.9
3,364,082 + MPMX20_03195 0.39 +2.5
3,364,090 - MPMX20_03195 0.39 +1.0
3,364,090 - MPMX20_03195 0.39 +0.5
3,364,090 - MPMX20_03195 0.39 +0.6
3,364,092 + MPMX20_03195 0.39 +0.5
3,364,102 + MPMX20_03195 0.40 +0.2
3,364,130 - MPMX20_03195 0.42 -0.1
3,364,131 + MPMX20_03195 0.42 -0.7
3,364,141 + MPMX20_03195 0.43 -0.3
3,364,227 + MPMX20_03195 0.48 -0.0
3,364,246 + MPMX20_03195 0.49 +1.8
3,364,246 + MPMX20_03195 0.49 -0.4
3,364,254 - MPMX20_03195 0.50 -0.6
3,364,308 - MPMX20_03195 0.54 +0.1
3,364,426 + MPMX20_03195 0.61 +1.3
3,364,461 + MPMX20_03195 0.64 -0.7
3,364,469 - MPMX20_03195 0.64 -0.1
3,364,503 - MPMX20_03195 0.66 +1.9
3,364,516 + MPMX20_03195 0.67 +0.9
3,364,516 + MPMX20_03195 0.67 -1.7
3,364,524 - MPMX20_03195 0.68 -0.0
3,364,565 + MPMX20_03195 0.70 -0.1
3,364,752 - MPMX20_03195 0.83 +0.7
3,364,763 + MPMX20_03195 0.84 -0.8
3,364,764 - MPMX20_03195 0.84 +1.7
3,364,778 - MPMX20_03195 0.85 +1.5
3,364,778 - MPMX20_03195 0.85 +0.1
3,364,900 - +0.3
3,364,900 - -0.1
3,364,966 - +0.8
3,364,997 + +0.1
3,365,068 - +0.7
3,365,176 + MPMX20_03196 0.12 -1.6
3,365,184 - MPMX20_03196 0.13 +0.1
3,365,265 + MPMX20_03196 0.19 +0.4
3,365,283 - MPMX20_03196 0.20 +0.3
3,365,283 - MPMX20_03196 0.20 +0.1
3,365,675 + MPMX20_03196 0.49 +0.5
3,365,682 - MPMX20_03196 0.49 +0.9
3,365,710 + MPMX20_03196 0.51 +1.3
3,365,729 + MPMX20_03196 0.53 -0.1
3,365,729 + MPMX20_03196 0.53 +1.1
3,365,737 - MPMX20_03196 0.53 +0.6
3,365,788 + MPMX20_03196 0.57 +0.8
3,365,849 + MPMX20_03196 0.61 -0.4
3,365,915 + MPMX20_03196 0.66 -0.6
3,365,915 + MPMX20_03196 0.66 +0.1
3,365,915 + MPMX20_03196 0.66 +1.1
3,365,923 - MPMX20_03196 0.67 +2.7
3,365,923 - MPMX20_03196 0.67 -1.1
3,365,928 + MPMX20_03196 0.67 -1.7
3,365,943 + MPMX20_03196 0.68 -0.3
3,366,003 - MPMX20_03196 0.73 +0.6
3,366,003 - MPMX20_03196 0.73 +2.0

Or see this region's nucleotide sequence