Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03193 and MPMX20_03194 are separated by 11 nucleotides MPMX20_03194 and MPMX20_03195 are separated by 11 nucleotides MPMX20_03195 and MPMX20_03196 are separated by 0 nucleotides
MPMX20_03193: MPMX20_03193 - hypothetical protein, at 3,362,062 to 3,363,042
_03193
MPMX20_03194: MPMX20_03194 - hypothetical protein, at 3,363,054 to 3,363,485
_03194
MPMX20_03195: MPMX20_03195 - hypothetical protein, at 3,363,497 to 3,365,011
_03195
MPMX20_03196: MPMX20_03196 - 2-succinylbenzoate--CoA ligase, at 3,365,012 to 3,366,373
_03196
Position (kb)
3363
3364
3365
3366 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3362.561 kb on - strand, within MPMX20_03193 at 3362.593 kb on - strand, within MPMX20_03193 at 3362.594 kb on - strand, within MPMX20_03193 at 3362.801 kb on + strand, within MPMX20_03193 at 3362.806 kb on + strand, within MPMX20_03193 at 3362.808 kb on - strand, within MPMX20_03193 at 3362.809 kb on - strand, within MPMX20_03193 at 3362.809 kb on - strand, within MPMX20_03193 at 3362.814 kb on - strand, within MPMX20_03193 at 3362.843 kb on + strand, within MPMX20_03193 at 3362.851 kb on - strand, within MPMX20_03193 at 3362.894 kb on + strand, within MPMX20_03193 at 3362.937 kb on - strand, within MPMX20_03193 at 3362.943 kb on + strand, within MPMX20_03193 at 3363.015 kb on + strand at 3363.015 kb on + strand at 3363.022 kb on + strand at 3363.022 kb on + strand at 3363.023 kb on - strand at 3363.097 kb on - strand at 3363.147 kb on - strand, within MPMX20_03194 at 3363.155 kb on + strand, within MPMX20_03194 at 3363.218 kb on - strand, within MPMX20_03194 at 3363.261 kb on - strand, within MPMX20_03194 at 3363.368 kb on + strand, within MPMX20_03194 at 3363.376 kb on - strand, within MPMX20_03194 at 3363.432 kb on + strand, within MPMX20_03194 at 3363.450 kb on + strand at 3363.458 kb on - strand at 3363.505 kb on - strand at 3363.609 kb on + strand at 3363.617 kb on - strand at 3363.778 kb on - strand, within MPMX20_03195 at 3363.822 kb on + strand, within MPMX20_03195 at 3363.905 kb on - strand, within MPMX20_03195 at 3363.905 kb on - strand, within MPMX20_03195 at 3363.907 kb on + strand, within MPMX20_03195 at 3364.019 kb on + strand, within MPMX20_03195 at 3364.029 kb on + strand, within MPMX20_03195 at 3364.029 kb on + strand, within MPMX20_03195 at 3364.034 kb on + strand, within MPMX20_03195 at 3364.037 kb on - strand, within MPMX20_03195 at 3364.037 kb on - strand, within MPMX20_03195 at 3364.082 kb on + strand, within MPMX20_03195 at 3364.082 kb on + strand, within MPMX20_03195 at 3364.082 kb on + strand, within MPMX20_03195 at 3364.082 kb on + strand, within MPMX20_03195 at 3364.090 kb on - strand, within MPMX20_03195 at 3364.090 kb on - strand, within MPMX20_03195 at 3364.090 kb on - strand, within MPMX20_03195 at 3364.092 kb on + strand, within MPMX20_03195 at 3364.102 kb on + strand, within MPMX20_03195 at 3364.130 kb on - strand, within MPMX20_03195 at 3364.131 kb on + strand, within MPMX20_03195 at 3364.141 kb on + strand, within MPMX20_03195 at 3364.227 kb on + strand, within MPMX20_03195 at 3364.246 kb on + strand, within MPMX20_03195 at 3364.246 kb on + strand, within MPMX20_03195 at 3364.254 kb on - strand, within MPMX20_03195 at 3364.308 kb on - strand, within MPMX20_03195 at 3364.426 kb on + strand, within MPMX20_03195 at 3364.461 kb on + strand, within MPMX20_03195 at 3364.469 kb on - strand, within MPMX20_03195 at 3364.503 kb on - strand, within MPMX20_03195 at 3364.516 kb on + strand, within MPMX20_03195 at 3364.516 kb on + strand, within MPMX20_03195 at 3364.524 kb on - strand, within MPMX20_03195 at 3364.565 kb on + strand, within MPMX20_03195 at 3364.752 kb on - strand, within MPMX20_03195 at 3364.763 kb on + strand, within MPMX20_03195 at 3364.764 kb on - strand, within MPMX20_03195 at 3364.778 kb on - strand, within MPMX20_03195 at 3364.778 kb on - strand, within MPMX20_03195 at 3364.900 kb on - strand at 3364.900 kb on - strand at 3364.966 kb on - strand at 3364.997 kb on + strand at 3365.068 kb on - strand at 3365.176 kb on + strand, within MPMX20_03196 at 3365.184 kb on - strand, within MPMX20_03196 at 3365.265 kb on + strand, within MPMX20_03196 at 3365.283 kb on - strand, within MPMX20_03196 at 3365.283 kb on - strand, within MPMX20_03196 at 3365.675 kb on + strand, within MPMX20_03196 at 3365.682 kb on - strand, within MPMX20_03196 at 3365.710 kb on + strand, within MPMX20_03196 at 3365.729 kb on + strand, within MPMX20_03196 at 3365.729 kb on + strand, within MPMX20_03196 at 3365.737 kb on - strand, within MPMX20_03196 at 3365.788 kb on + strand, within MPMX20_03196 at 3365.849 kb on + strand, within MPMX20_03196 at 3365.915 kb on + strand, within MPMX20_03196 at 3365.915 kb on + strand, within MPMX20_03196 at 3365.915 kb on + strand, within MPMX20_03196 at 3365.923 kb on - strand, within MPMX20_03196 at 3365.923 kb on - strand, within MPMX20_03196 at 3365.928 kb on + strand, within MPMX20_03196 at 3365.943 kb on + strand, within MPMX20_03196 at 3366.003 kb on - strand, within MPMX20_03196 at 3366.003 kb on - strand, within MPMX20_03196
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,362,561 - MPMX20_03193 0.51 -0.1 3,362,593 - MPMX20_03193 0.54 -0.4 3,362,594 - MPMX20_03193 0.54 -0.7 3,362,801 + MPMX20_03193 0.75 +0.8 3,362,806 + MPMX20_03193 0.76 -2.1 3,362,808 - MPMX20_03193 0.76 -1.3 3,362,809 - MPMX20_03193 0.76 +0.6 3,362,809 - MPMX20_03193 0.76 +0.3 3,362,814 - MPMX20_03193 0.77 +0.6 3,362,843 + MPMX20_03193 0.80 -0.7 3,362,851 - MPMX20_03193 0.80 -0.1 3,362,894 + MPMX20_03193 0.85 +1.2 3,362,937 - MPMX20_03193 0.89 +1.4 3,362,943 + MPMX20_03193 0.90 -0.5 3,363,015 + -0.7 3,363,015 + -2.6 3,363,022 + -0.8 3,363,022 + -0.3 3,363,023 - -0.6 3,363,097 - +0.7 3,363,147 - MPMX20_03194 0.22 +0.3 3,363,155 + MPMX20_03194 0.23 -0.8 3,363,218 - MPMX20_03194 0.38 +1.0 3,363,261 - MPMX20_03194 0.48 +0.2 3,363,368 + MPMX20_03194 0.73 -0.2 3,363,376 - MPMX20_03194 0.75 +0.3 3,363,432 + MPMX20_03194 0.88 -1.0 3,363,450 + -0.2 3,363,458 - -0.1 3,363,505 - +2.5 3,363,609 + -0.5 3,363,617 - +3.2 3,363,778 - MPMX20_03195 0.19 +0.8 3,363,822 + MPMX20_03195 0.21 +0.2 3,363,905 - MPMX20_03195 0.27 +0.3 3,363,905 - MPMX20_03195 0.27 +0.8 3,363,907 + MPMX20_03195 0.27 -1.5 3,364,019 + MPMX20_03195 0.34 -0.3 3,364,029 + MPMX20_03195 0.35 +0.8 3,364,029 + MPMX20_03195 0.35 +1.4 3,364,034 + MPMX20_03195 0.35 -0.6 3,364,037 - MPMX20_03195 0.36 +5.0 3,364,037 - MPMX20_03195 0.36 +0.3 3,364,082 + MPMX20_03195 0.39 -0.6 3,364,082 + MPMX20_03195 0.39 +1.7 3,364,082 + MPMX20_03195 0.39 +0.9 3,364,082 + MPMX20_03195 0.39 +2.5 3,364,090 - MPMX20_03195 0.39 +1.0 3,364,090 - MPMX20_03195 0.39 +0.5 3,364,090 - MPMX20_03195 0.39 +0.6 3,364,092 + MPMX20_03195 0.39 +0.5 3,364,102 + MPMX20_03195 0.40 +0.2 3,364,130 - MPMX20_03195 0.42 -0.1 3,364,131 + MPMX20_03195 0.42 -0.7 3,364,141 + MPMX20_03195 0.43 -0.3 3,364,227 + MPMX20_03195 0.48 -0.0 3,364,246 + MPMX20_03195 0.49 +1.8 3,364,246 + MPMX20_03195 0.49 -0.4 3,364,254 - MPMX20_03195 0.50 -0.6 3,364,308 - MPMX20_03195 0.54 +0.1 3,364,426 + MPMX20_03195 0.61 +1.3 3,364,461 + MPMX20_03195 0.64 -0.7 3,364,469 - MPMX20_03195 0.64 -0.1 3,364,503 - MPMX20_03195 0.66 +1.9 3,364,516 + MPMX20_03195 0.67 +0.9 3,364,516 + MPMX20_03195 0.67 -1.7 3,364,524 - MPMX20_03195 0.68 -0.0 3,364,565 + MPMX20_03195 0.70 -0.1 3,364,752 - MPMX20_03195 0.83 +0.7 3,364,763 + MPMX20_03195 0.84 -0.8 3,364,764 - MPMX20_03195 0.84 +1.7 3,364,778 - MPMX20_03195 0.85 +1.5 3,364,778 - MPMX20_03195 0.85 +0.1 3,364,900 - +0.3 3,364,900 - -0.1 3,364,966 - +0.8 3,364,997 + +0.1 3,365,068 - +0.7 3,365,176 + MPMX20_03196 0.12 -1.6 3,365,184 - MPMX20_03196 0.13 +0.1 3,365,265 + MPMX20_03196 0.19 +0.4 3,365,283 - MPMX20_03196 0.20 +0.3 3,365,283 - MPMX20_03196 0.20 +0.1 3,365,675 + MPMX20_03196 0.49 +0.5 3,365,682 - MPMX20_03196 0.49 +0.9 3,365,710 + MPMX20_03196 0.51 +1.3 3,365,729 + MPMX20_03196 0.53 -0.1 3,365,729 + MPMX20_03196 0.53 +1.1 3,365,737 - MPMX20_03196 0.53 +0.6 3,365,788 + MPMX20_03196 0.57 +0.8 3,365,849 + MPMX20_03196 0.61 -0.4 3,365,915 + MPMX20_03196 0.66 -0.6 3,365,915 + MPMX20_03196 0.66 +0.1 3,365,915 + MPMX20_03196 0.66 +1.1 3,365,923 - MPMX20_03196 0.67 +2.7 3,365,923 - MPMX20_03196 0.67 -1.1 3,365,928 + MPMX20_03196 0.67 -1.7 3,365,943 + MPMX20_03196 0.68 -0.3 3,366,003 - MPMX20_03196 0.73 +0.6 3,366,003 - MPMX20_03196 0.73 +2.0
Or see this region's nucleotide sequence