Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01741 and MPMX20_01742 are separated by 126 nucleotides MPMX20_01742 and MPMX20_01743 are separated by 124 nucleotides
MPMX20_01741: MPMX20_01741 - Dihydroorotase, at 1,835,495 to 1,836,541
_01741
MPMX20_01742: MPMX20_01742 - putative lipoprotein YceB, at 1,836,668 to 1,837,228
_01742
MPMX20_01743: MPMX20_01743 - Multidrug resistance protein MdtH, at 1,837,353 to 1,838,561
_01743
Position (kb)
1836
1837
1838 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1835.679 kb on + strand, within MPMX20_01741 at 1835.687 kb on - strand, within MPMX20_01741 at 1835.706 kb on - strand, within MPMX20_01741 at 1835.711 kb on + strand, within MPMX20_01741 at 1835.797 kb on + strand, within MPMX20_01741 at 1835.869 kb on + strand, within MPMX20_01741 at 1835.879 kb on + strand, within MPMX20_01741 at 1835.885 kb on - strand, within MPMX20_01741 at 1835.887 kb on - strand, within MPMX20_01741 at 1835.887 kb on - strand, within MPMX20_01741 at 1835.887 kb on - strand, within MPMX20_01741 at 1835.921 kb on - strand, within MPMX20_01741 at 1835.970 kb on - strand, within MPMX20_01741 at 1835.978 kb on + strand, within MPMX20_01741 at 1836.019 kb on - strand, within MPMX20_01741 at 1836.033 kb on + strand, within MPMX20_01741 at 1836.156 kb on + strand, within MPMX20_01741 at 1836.253 kb on - strand, within MPMX20_01741 at 1836.309 kb on - strand, within MPMX20_01741 at 1836.384 kb on + strand, within MPMX20_01741 at 1836.436 kb on - strand, within MPMX20_01741 at 1836.443 kb on + strand at 1836.444 kb on + strand at 1836.451 kb on - strand at 1836.451 kb on - strand at 1836.452 kb on - strand at 1836.530 kb on - strand at 1836.545 kb on + strand at 1836.554 kb on - strand at 1836.651 kb on + strand at 1836.665 kb on + strand at 1836.700 kb on + strand at 1836.706 kb on + strand at 1836.714 kb on - strand at 1836.737 kb on + strand, within MPMX20_01742 at 1836.737 kb on + strand, within MPMX20_01742 at 1836.744 kb on + strand, within MPMX20_01742 at 1836.744 kb on + strand, within MPMX20_01742 at 1836.745 kb on - strand, within MPMX20_01742 at 1836.745 kb on - strand, within MPMX20_01742 at 1836.752 kb on - strand, within MPMX20_01742 at 1836.752 kb on - strand, within MPMX20_01742 at 1836.754 kb on + strand, within MPMX20_01742 at 1836.766 kb on + strand, within MPMX20_01742 at 1836.767 kb on + strand, within MPMX20_01742 at 1836.792 kb on - strand, within MPMX20_01742 at 1836.818 kb on + strand, within MPMX20_01742 at 1836.828 kb on - strand, within MPMX20_01742 at 1836.840 kb on + strand, within MPMX20_01742 at 1836.848 kb on - strand, within MPMX20_01742 at 1836.884 kb on - strand, within MPMX20_01742 at 1836.930 kb on + strand, within MPMX20_01742 at 1836.938 kb on - strand, within MPMX20_01742 at 1836.973 kb on - strand, within MPMX20_01742 at 1837.033 kb on + strand, within MPMX20_01742 at 1837.041 kb on - strand, within MPMX20_01742 at 1837.052 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.168 kb on + strand, within MPMX20_01742 at 1837.173 kb on + strand at 1837.176 kb on - strand at 1837.176 kb on - strand at 1837.176 kb on - strand at 1837.230 kb on + strand at 1837.254 kb on + strand at 1837.450 kb on + strand at 1837.478 kb on - strand, within MPMX20_01743 at 1837.523 kb on - strand, within MPMX20_01743 at 1837.624 kb on - strand, within MPMX20_01743 at 1837.635 kb on + strand, within MPMX20_01743 at 1837.653 kb on - strand, within MPMX20_01743 at 1837.675 kb on + strand, within MPMX20_01743 at 1837.694 kb on + strand, within MPMX20_01743 at 1837.702 kb on - strand, within MPMX20_01743 at 1837.747 kb on - strand, within MPMX20_01743 at 1837.777 kb on + strand, within MPMX20_01743 at 1837.785 kb on - strand, within MPMX20_01743 at 1837.861 kb on + strand, within MPMX20_01743 at 1837.877 kb on + strand, within MPMX20_01743 at 1837.894 kb on + strand, within MPMX20_01743 at 1837.941 kb on + strand, within MPMX20_01743 at 1837.956 kb on + strand, within MPMX20_01743 at 1837.964 kb on - strand, within MPMX20_01743 at 1837.964 kb on - strand, within MPMX20_01743 at 1837.964 kb on - strand, within MPMX20_01743 at 1838.013 kb on - strand, within MPMX20_01743 at 1838.017 kb on + strand, within MPMX20_01743 at 1838.017 kb on + strand, within MPMX20_01743 at 1838.025 kb on - strand, within MPMX20_01743 at 1838.059 kb on + strand, within MPMX20_01743 at 1838.064 kb on + strand, within MPMX20_01743 at 1838.097 kb on + strand, within MPMX20_01743 at 1838.097 kb on + strand, within MPMX20_01743 at 1838.097 kb on + strand, within MPMX20_01743 at 1838.105 kb on - strand, within MPMX20_01743 at 1838.125 kb on + strand, within MPMX20_01743 at 1838.128 kb on - strand, within MPMX20_01743 at 1838.130 kb on + strand, within MPMX20_01743 at 1838.130 kb on + strand, within MPMX20_01743 at 1838.130 kb on + strand, within MPMX20_01743 at 1838.138 kb on - strand, within MPMX20_01743 at 1838.138 kb on - strand, within MPMX20_01743 at 1838.138 kb on - strand, within MPMX20_01743
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,835,679 + MPMX20_01741 0.18 -1.9 1,835,687 - MPMX20_01741 0.18 -2.8 1,835,706 - MPMX20_01741 0.20 -3.7 1,835,711 + MPMX20_01741 0.21 -2.9 1,835,797 + MPMX20_01741 0.29 -1.4 1,835,869 + MPMX20_01741 0.36 -0.6 1,835,879 + MPMX20_01741 0.37 -3.4 1,835,885 - MPMX20_01741 0.37 -0.9 1,835,887 - MPMX20_01741 0.37 -2.1 1,835,887 - MPMX20_01741 0.37 -1.6 1,835,887 - MPMX20_01741 0.37 -3.3 1,835,921 - MPMX20_01741 0.41 -1.9 1,835,970 - MPMX20_01741 0.45 -2.9 1,835,978 + MPMX20_01741 0.46 -1.2 1,836,019 - MPMX20_01741 0.50 -3.9 1,836,033 + MPMX20_01741 0.51 -3.1 1,836,156 + MPMX20_01741 0.63 -3.0 1,836,253 - MPMX20_01741 0.72 -1.8 1,836,309 - MPMX20_01741 0.78 -1.2 1,836,384 + MPMX20_01741 0.85 -4.7 1,836,436 - MPMX20_01741 0.90 -2.3 1,836,443 + -3.1 1,836,444 + -2.2 1,836,451 - -3.7 1,836,451 - -3.0 1,836,452 - -3.4 1,836,530 - -0.4 1,836,545 + -1.4 1,836,554 - +0.7 1,836,651 + -0.2 1,836,665 + -0.3 1,836,700 + -0.5 1,836,706 + -0.8 1,836,714 - +2.5 1,836,737 + MPMX20_01742 0.12 +0.9 1,836,737 + MPMX20_01742 0.12 -0.1 1,836,744 + MPMX20_01742 0.14 -0.1 1,836,744 + MPMX20_01742 0.14 -0.6 1,836,745 - MPMX20_01742 0.14 -0.2 1,836,745 - MPMX20_01742 0.14 -0.4 1,836,752 - MPMX20_01742 0.15 -0.4 1,836,752 - MPMX20_01742 0.15 -0.1 1,836,754 + MPMX20_01742 0.15 +0.7 1,836,766 + MPMX20_01742 0.17 +1.4 1,836,767 + MPMX20_01742 0.18 +2.9 1,836,792 - MPMX20_01742 0.22 +0.8 1,836,818 + MPMX20_01742 0.27 -0.9 1,836,828 - MPMX20_01742 0.29 -0.9 1,836,840 + MPMX20_01742 0.31 -0.6 1,836,848 - MPMX20_01742 0.32 -1.4 1,836,884 - MPMX20_01742 0.39 +0.8 1,836,930 + MPMX20_01742 0.47 -0.4 1,836,938 - MPMX20_01742 0.48 -0.6 1,836,973 - MPMX20_01742 0.54 -0.3 1,837,033 + MPMX20_01742 0.65 -0.0 1,837,041 - MPMX20_01742 0.66 -0.6 1,837,052 + MPMX20_01742 0.68 -0.3 1,837,168 + MPMX20_01742 0.89 +0.9 1,837,168 + MPMX20_01742 0.89 -0.1 1,837,168 + MPMX20_01742 0.89 +0.4 1,837,168 + MPMX20_01742 0.89 +0.2 1,837,168 + MPMX20_01742 0.89 +0.4 1,837,173 + +0.1 1,837,176 - +0.7 1,837,176 - -0.4 1,837,176 - +1.8 1,837,230 + +0.1 1,837,254 + +0.4 1,837,450 + -0.7 1,837,478 - MPMX20_01743 0.10 +0.3 1,837,523 - MPMX20_01743 0.14 +0.4 1,837,624 - MPMX20_01743 0.22 +0.3 1,837,635 + MPMX20_01743 0.23 -0.0 1,837,653 - MPMX20_01743 0.25 -0.7 1,837,675 + MPMX20_01743 0.27 +0.7 1,837,694 + MPMX20_01743 0.28 +0.8 1,837,702 - MPMX20_01743 0.29 +0.7 1,837,747 - MPMX20_01743 0.33 +0.1 1,837,777 + MPMX20_01743 0.35 +1.8 1,837,785 - MPMX20_01743 0.36 +0.3 1,837,861 + MPMX20_01743 0.42 -0.1 1,837,877 + MPMX20_01743 0.43 +0.1 1,837,894 + MPMX20_01743 0.45 +0.1 1,837,941 + MPMX20_01743 0.49 -0.7 1,837,956 + MPMX20_01743 0.50 +0.5 1,837,964 - MPMX20_01743 0.51 -0.4 1,837,964 - MPMX20_01743 0.51 +1.0 1,837,964 - MPMX20_01743 0.51 +1.1 1,838,013 - MPMX20_01743 0.55 +0.3 1,838,017 + MPMX20_01743 0.55 -0.4 1,838,017 + MPMX20_01743 0.55 +1.6 1,838,025 - MPMX20_01743 0.56 -0.5 1,838,059 + MPMX20_01743 0.58 +0.6 1,838,064 + MPMX20_01743 0.59 -0.2 1,838,097 + MPMX20_01743 0.62 +0.3 1,838,097 + MPMX20_01743 0.62 -0.3 1,838,097 + MPMX20_01743 0.62 +1.2 1,838,105 - MPMX20_01743 0.62 +1.4 1,838,125 + MPMX20_01743 0.64 +0.3 1,838,128 - MPMX20_01743 0.64 +0.4 1,838,130 + MPMX20_01743 0.64 -0.4 1,838,130 + MPMX20_01743 0.64 +0.6 1,838,130 + MPMX20_01743 0.64 -0.2 1,838,138 - MPMX20_01743 0.65 +0.5 1,838,138 - MPMX20_01743 0.65 -0.1 1,838,138 - MPMX20_01743 0.65 -0.3
Or see this region's nucleotide sequence