Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00546

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00544 and MPMX20_00545 are separated by 239 nucleotidesMPMX20_00545 and MPMX20_00546 are separated by 71 nucleotidesMPMX20_00546 and MPMX20_00547 are separated by 46 nucleotides MPMX20_00544: MPMX20_00544 - Aspartate carbamoyltransferase catalytic subunit, at 566,686 to 567,618 _00544 MPMX20_00545: MPMX20_00545 - Arginine repressor, at 567,858 to 568,346 _00545 MPMX20_00546: MPMX20_00546 - hypothetical protein, at 568,418 to 569,821 _00546 MPMX20_00547: MPMX20_00547 - Ornithine carbamoyltransferase, at 569,868 to 570,872 _00547 Position (kb) 568 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 567.435 kb on - strand, within MPMX20_00544at 567.445 kb on + strand, within MPMX20_00544at 567.554 kb on + strandat 567.562 kb on - strandat 567.572 kb on - strandat 567.651 kb on + strandat 567.654 kb on + strandat 567.706 kb on - strandat 567.722 kb on - strandat 567.732 kb on + strandat 567.732 kb on + strandat 567.739 kb on - strandat 567.747 kb on + strandat 567.755 kb on - strandat 567.917 kb on + strand, within MPMX20_00545at 567.917 kb on - strand, within MPMX20_00545at 567.945 kb on - strand, within MPMX20_00545at 568.015 kb on - strand, within MPMX20_00545at 568.016 kb on - strand, within MPMX20_00545at 568.020 kb on - strand, within MPMX20_00545at 568.042 kb on - strand, within MPMX20_00545at 568.047 kb on + strand, within MPMX20_00545at 568.047 kb on + strand, within MPMX20_00545at 568.047 kb on + strand, within MPMX20_00545at 568.102 kb on + strand, within MPMX20_00545at 568.110 kb on - strand, within MPMX20_00545at 568.207 kb on - strand, within MPMX20_00545at 568.216 kb on - strand, within MPMX20_00545at 568.229 kb on - strand, within MPMX20_00545at 568.263 kb on - strand, within MPMX20_00545at 568.297 kb on - strand, within MPMX20_00545at 568.305 kb on + strandat 568.359 kb on + strandat 568.359 kb on - strandat 568.382 kb on + strandat 568.443 kb on - strandat 568.572 kb on - strand, within MPMX20_00546at 568.588 kb on + strand, within MPMX20_00546at 568.588 kb on + strand, within MPMX20_00546at 568.600 kb on + strand, within MPMX20_00546at 568.601 kb on - strand, within MPMX20_00546at 568.606 kb on + strand, within MPMX20_00546at 568.606 kb on + strand, within MPMX20_00546at 568.611 kb on + strand, within MPMX20_00546at 568.611 kb on + strand, within MPMX20_00546at 568.613 kb on + strand, within MPMX20_00546at 568.654 kb on - strand, within MPMX20_00546at 568.732 kb on + strand, within MPMX20_00546at 568.791 kb on + strand, within MPMX20_00546at 568.833 kb on - strand, within MPMX20_00546at 568.958 kb on - strand, within MPMX20_00546at 568.973 kb on + strand, within MPMX20_00546at 568.973 kb on + strand, within MPMX20_00546at 568.976 kb on - strand, within MPMX20_00546at 568.981 kb on + strand, within MPMX20_00546at 568.981 kb on - strand, within MPMX20_00546at 569.009 kb on + strand, within MPMX20_00546at 569.022 kb on - strand, within MPMX20_00546at 569.215 kb on + strand, within MPMX20_00546at 569.215 kb on + strand, within MPMX20_00546at 569.218 kb on - strand, within MPMX20_00546at 569.223 kb on - strand, within MPMX20_00546at 569.236 kb on - strand, within MPMX20_00546at 569.275 kb on + strand, within MPMX20_00546at 569.359 kb on + strand, within MPMX20_00546at 569.364 kb on + strand, within MPMX20_00546at 569.377 kb on + strand, within MPMX20_00546at 569.379 kb on + strand, within MPMX20_00546at 569.385 kb on - strand, within MPMX20_00546at 569.416 kb on - strand, within MPMX20_00546at 569.500 kb on - strand, within MPMX20_00546at 569.705 kb on + strandat 569.745 kb on + strandat 569.750 kb on + strandat 569.750 kb on + strandat 569.750 kb on + strandat 569.830 kb on + strandat 569.897 kb on + strandat 569.897 kb on + strandat 569.897 kb on + strandat 569.905 kb on - strandat 569.905 kb on - strandat 569.918 kb on + strandat 569.924 kb on - strandat 569.924 kb on - strandat 569.972 kb on + strand, within MPMX20_00547at 570.024 kb on - strand, within MPMX20_00547at 570.051 kb on + strand, within MPMX20_00547at 570.066 kb on - strand, within MPMX20_00547at 570.120 kb on - strand, within MPMX20_00547at 570.136 kb on + strand, within MPMX20_00547at 570.136 kb on + strand, within MPMX20_00547at 570.136 kb on + strand, within MPMX20_00547at 570.136 kb on + strand, within MPMX20_00547at 570.136 kb on + strand, within MPMX20_00547at 570.144 kb on - strand, within MPMX20_00547at 570.144 kb on - strand, within MPMX20_00547at 570.178 kb on + strand, within MPMX20_00547at 570.178 kb on - strand, within MPMX20_00547at 570.183 kb on - strand, within MPMX20_00547at 570.186 kb on - strand, within MPMX20_00547at 570.198 kb on + strand, within MPMX20_00547at 570.206 kb on - strand, within MPMX20_00547at 570.217 kb on + strand, within MPMX20_00547at 570.256 kb on - strand, within MPMX20_00547at 570.259 kb on + strand, within MPMX20_00547at 570.264 kb on + strand, within MPMX20_00547at 570.272 kb on - strand, within MPMX20_00547at 570.430 kb on - strand, within MPMX20_00547at 570.451 kb on + strand, within MPMX20_00547at 570.456 kb on + strand, within MPMX20_00547at 570.456 kb on + strand, within MPMX20_00547at 570.459 kb on - strand, within MPMX20_00547at 570.459 kb on - strand, within MPMX20_00547at 570.513 kb on - strand, within MPMX20_00547at 570.534 kb on + strand, within MPMX20_00547at 570.534 kb on + strand, within MPMX20_00547at 570.535 kb on + strand, within MPMX20_00547at 570.554 kb on + strand, within MPMX20_00547at 570.594 kb on + strand, within MPMX20_00547at 570.642 kb on - strand, within MPMX20_00547at 570.650 kb on + strand, within MPMX20_00547at 570.662 kb on + strand, within MPMX20_00547at 570.662 kb on + strand, within MPMX20_00547at 570.670 kb on - strand, within MPMX20_00547at 570.670 kb on - strand, within MPMX20_00547

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
567,435 - MPMX20_00544 0.80 -2.5
567,445 + MPMX20_00544 0.81 -0.5
567,554 + -2.9
567,562 - -2.1
567,572 - -2.8
567,651 + -0.2
567,654 + -1.4
567,706 - +0.2
567,722 - -1.9
567,732 + -1.4
567,732 + +0.7
567,739 - -0.2
567,747 + -2.4
567,755 - -1.3
567,917 + MPMX20_00545 0.12 +2.2
567,917 - MPMX20_00545 0.12 -1.8
567,945 - MPMX20_00545 0.18 +0.6
568,015 - MPMX20_00545 0.32 -0.6
568,016 - MPMX20_00545 0.32 +0.2
568,020 - MPMX20_00545 0.33 -0.6
568,042 - MPMX20_00545 0.38 +3.2
568,047 + MPMX20_00545 0.39 -0.6
568,047 + MPMX20_00545 0.39 +0.5
568,047 + MPMX20_00545 0.39 +0.2
568,102 + MPMX20_00545 0.50 -0.7
568,110 - MPMX20_00545 0.52 -0.1
568,207 - MPMX20_00545 0.71 -1.1
568,216 - MPMX20_00545 0.73 -0.4
568,229 - MPMX20_00545 0.76 -0.1
568,263 - MPMX20_00545 0.83 +0.6
568,297 - MPMX20_00545 0.90 +0.2
568,305 + -0.1
568,359 + +0.1
568,359 - +0.1
568,382 + +1.3
568,443 - -0.8
568,572 - MPMX20_00546 0.11 -0.5
568,588 + MPMX20_00546 0.12 -2.8
568,588 + MPMX20_00546 0.12 -0.1
568,600 + MPMX20_00546 0.13 -1.3
568,601 - MPMX20_00546 0.13 -0.7
568,606 + MPMX20_00546 0.13 +0.6
568,606 + MPMX20_00546 0.13 +1.4
568,611 + MPMX20_00546 0.14 -1.1
568,611 + MPMX20_00546 0.14 +0.3
568,613 + MPMX20_00546 0.14 -0.1
568,654 - MPMX20_00546 0.17 -0.8
568,732 + MPMX20_00546 0.22 -0.7
568,791 + MPMX20_00546 0.27 -2.1
568,833 - MPMX20_00546 0.30 +0.2
568,958 - MPMX20_00546 0.38 -1.0
568,973 + MPMX20_00546 0.40 -0.6
568,973 + MPMX20_00546 0.40 -0.7
568,976 - MPMX20_00546 0.40 -1.0
568,981 + MPMX20_00546 0.40 -2.6
568,981 - MPMX20_00546 0.40 -0.1
569,009 + MPMX20_00546 0.42 -0.3
569,022 - MPMX20_00546 0.43 -0.7
569,215 + MPMX20_00546 0.57 -0.2
569,215 + MPMX20_00546 0.57 +0.4
569,218 - MPMX20_00546 0.57 +0.5
569,223 - MPMX20_00546 0.57 +0.2
569,236 - MPMX20_00546 0.58 -0.6
569,275 + MPMX20_00546 0.61 -2.4
569,359 + MPMX20_00546 0.67 -0.3
569,364 + MPMX20_00546 0.67 +1.2
569,377 + MPMX20_00546 0.68 +0.5
569,379 + MPMX20_00546 0.68 +0.6
569,385 - MPMX20_00546 0.69 +1.8
569,416 - MPMX20_00546 0.71 -0.8
569,500 - MPMX20_00546 0.77 +0.9
569,705 + -0.1
569,745 + +1.1
569,750 + -2.4
569,750 + -0.9
569,750 + +1.8
569,830 + +0.1
569,897 + -0.6
569,897 + +0.5
569,897 + -0.3
569,905 - +1.1
569,905 - +1.0
569,918 + +2.3
569,924 - -0.4
569,924 - -0.6
569,972 + MPMX20_00547 0.10 +0.3
570,024 - MPMX20_00547 0.16 +0.5
570,051 + MPMX20_00547 0.18 +0.3
570,066 - MPMX20_00547 0.20 -0.7
570,120 - MPMX20_00547 0.25 -0.4
570,136 + MPMX20_00547 0.27 +0.8
570,136 + MPMX20_00547 0.27 -0.9
570,136 + MPMX20_00547 0.27 +0.1
570,136 + MPMX20_00547 0.27 -1.3
570,136 + MPMX20_00547 0.27 +0.4
570,144 - MPMX20_00547 0.27 +0.4
570,144 - MPMX20_00547 0.27 -1.1
570,178 + MPMX20_00547 0.31 +0.7
570,178 - MPMX20_00547 0.31 +0.1
570,183 - MPMX20_00547 0.31 -0.3
570,186 - MPMX20_00547 0.32 +1.2
570,198 + MPMX20_00547 0.33 -0.2
570,206 - MPMX20_00547 0.34 -0.5
570,217 + MPMX20_00547 0.35 +0.4
570,256 - MPMX20_00547 0.39 -0.7
570,259 + MPMX20_00547 0.39 +1.4
570,264 + MPMX20_00547 0.39 +0.9
570,272 - MPMX20_00547 0.40 +0.7
570,430 - MPMX20_00547 0.56 +2.1
570,451 + MPMX20_00547 0.58 +0.7
570,456 + MPMX20_00547 0.59 -1.2
570,456 + MPMX20_00547 0.59 +1.0
570,459 - MPMX20_00547 0.59 -1.4
570,459 - MPMX20_00547 0.59 +1.1
570,513 - MPMX20_00547 0.64 +1.3
570,534 + MPMX20_00547 0.66 +1.3
570,534 + MPMX20_00547 0.66 -0.7
570,535 + MPMX20_00547 0.66 -1.1
570,554 + MPMX20_00547 0.68 +2.1
570,594 + MPMX20_00547 0.72 +0.2
570,642 - MPMX20_00547 0.77 +1.2
570,650 + MPMX20_00547 0.78 -0.0
570,662 + MPMX20_00547 0.79 -0.2
570,662 + MPMX20_00547 0.79 -0.4
570,670 - MPMX20_00547 0.80 -0.3
570,670 - MPMX20_00547 0.80 +0.7

Or see this region's nucleotide sequence