Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00168

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00166 and MPMX20_00167 are separated by 103 nucleotidesMPMX20_00167 and MPMX20_00168 overlap by 1 nucleotidesMPMX20_00168 and MPMX20_00169 overlap by 8 nucleotides MPMX20_00166: MPMX20_00166 - Xylulose kinase, at 172,472 to 173,926 _00166 MPMX20_00167: MPMX20_00167 - hypothetical protein, at 174,030 to 174,569 _00167 MPMX20_00168: MPMX20_00168 - HTH-type transcriptional regulator CdhR, at 174,569 to 175,489 _00168 MPMX20_00169: MPMX20_00169 - O-acetyltransferase WecH, at 175,482 to 176,477 _00169 Position (kb) 174 175 176Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 173.587 kb on - strand, within MPMX20_00166at 173.587 kb on - strand, within MPMX20_00166at 173.598 kb on + strand, within MPMX20_00166at 173.598 kb on + strand, within MPMX20_00166at 173.609 kb on + strand, within MPMX20_00166at 173.609 kb on + strand, within MPMX20_00166at 173.617 kb on - strand, within MPMX20_00166at 173.622 kb on + strand, within MPMX20_00166at 173.640 kb on - strand, within MPMX20_00166at 173.668 kb on - strand, within MPMX20_00166at 173.732 kb on + strand, within MPMX20_00166at 173.746 kb on + strand, within MPMX20_00166at 173.746 kb on + strand, within MPMX20_00166at 173.772 kb on - strand, within MPMX20_00166at 173.820 kb on + strandat 173.834 kb on + strandat 173.874 kb on + strandat 173.945 kb on + strandat 173.946 kb on + strandat 173.979 kb on - strandat 174.000 kb on + strandat 174.000 kb on + strandat 174.002 kb on + strandat 174.112 kb on + strand, within MPMX20_00167at 174.137 kb on + strand, within MPMX20_00167at 174.137 kb on + strand, within MPMX20_00167at 174.145 kb on - strand, within MPMX20_00167at 174.197 kb on - strand, within MPMX20_00167at 174.197 kb on - strand, within MPMX20_00167at 174.197 kb on - strand, within MPMX20_00167at 174.339 kb on - strand, within MPMX20_00167at 174.339 kb on - strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.392 kb on + strand, within MPMX20_00167at 174.397 kb on + strand, within MPMX20_00167at 174.405 kb on - strand, within MPMX20_00167at 174.405 kb on - strand, within MPMX20_00167at 174.407 kb on + strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.422 kb on - strand, within MPMX20_00167at 174.466 kb on + strand, within MPMX20_00167at 174.564 kb on + strandat 174.624 kb on - strandat 174.635 kb on - strandat 174.670 kb on + strand, within MPMX20_00168at 174.670 kb on + strand, within MPMX20_00168at 174.715 kb on + strand, within MPMX20_00168at 174.726 kb on + strand, within MPMX20_00168at 174.734 kb on - strand, within MPMX20_00168at 174.894 kb on + strand, within MPMX20_00168at 174.902 kb on - strand, within MPMX20_00168at 174.902 kb on - strand, within MPMX20_00168at 174.902 kb on - strand, within MPMX20_00168at 174.933 kb on + strand, within MPMX20_00168at 174.943 kb on + strand, within MPMX20_00168at 174.945 kb on + strand, within MPMX20_00168at 174.951 kb on - strand, within MPMX20_00168at 175.037 kb on + strand, within MPMX20_00168at 175.045 kb on - strand, within MPMX20_00168at 175.079 kb on - strand, within MPMX20_00168at 175.079 kb on - strand, within MPMX20_00168at 175.089 kb on - strand, within MPMX20_00168at 175.155 kb on + strand, within MPMX20_00168at 175.242 kb on + strand, within MPMX20_00168at 175.259 kb on + strand, within MPMX20_00168at 175.267 kb on - strand, within MPMX20_00168at 175.267 kb on - strand, within MPMX20_00168at 175.356 kb on + strand, within MPMX20_00168at 175.356 kb on + strand, within MPMX20_00168at 175.410 kb on + strandat 175.415 kb on + strandat 175.418 kb on - strandat 175.418 kb on - strandat 175.418 kb on - strandat 175.464 kb on - strandat 175.479 kb on + strandat 175.479 kb on + strandat 175.507 kb on + strandat 175.520 kb on + strandat 175.520 kb on + strandat 175.666 kb on - strand, within MPMX20_00169at 175.690 kb on - strand, within MPMX20_00169at 175.728 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.740 kb on + strand, within MPMX20_00169at 175.748 kb on - strand, within MPMX20_00169at 175.748 kb on - strand, within MPMX20_00169at 175.748 kb on - strand, within MPMX20_00169at 175.850 kb on + strand, within MPMX20_00169at 175.850 kb on + strand, within MPMX20_00169at 175.858 kb on - strand, within MPMX20_00169at 175.858 kb on - strand, within MPMX20_00169at 175.920 kb on + strand, within MPMX20_00169at 175.921 kb on - strand, within MPMX20_00169at 175.930 kb on + strand, within MPMX20_00169at 176.073 kb on - strand, within MPMX20_00169at 176.073 kb on - strand, within MPMX20_00169at 176.154 kb on + strand, within MPMX20_00169at 176.162 kb on - strand, within MPMX20_00169at 176.173 kb on + strand, within MPMX20_00169at 176.183 kb on + strand, within MPMX20_00169at 176.187 kb on + strand, within MPMX20_00169at 176.192 kb on + strand, within MPMX20_00169at 176.200 kb on - strand, within MPMX20_00169at 176.200 kb on - strand, within MPMX20_00169at 176.202 kb on + strand, within MPMX20_00169at 176.208 kb on + strand, within MPMX20_00169at 176.208 kb on + strand, within MPMX20_00169at 176.210 kb on - strand, within MPMX20_00169at 176.210 kb on - strand, within MPMX20_00169at 176.220 kb on + strand, within MPMX20_00169at 176.220 kb on + strand, within MPMX20_00169at 176.228 kb on - strand, within MPMX20_00169at 176.228 kb on - strand, within MPMX20_00169at 176.315 kb on - strand, within MPMX20_00169at 176.320 kb on - strand, within MPMX20_00169at 176.322 kb on + strand, within MPMX20_00169at 176.335 kb on + strand, within MPMX20_00169at 176.337 kb on + strand, within MPMX20_00169at 176.337 kb on + strand, within MPMX20_00169at 176.363 kb on + strand, within MPMX20_00169at 176.369 kb on + strand, within MPMX20_00169at 176.369 kb on + strand, within MPMX20_00169at 176.369 kb on + strand, within MPMX20_00169at 176.371 kb on - strand, within MPMX20_00169at 176.377 kb on - strand, within MPMX20_00169at 176.377 kb on - strand, within MPMX20_00169at 176.377 kb on - strand, within MPMX20_00169at 176.379 kb on + strandat 176.423 kb on + strandat 176.431 kb on - strandat 176.442 kb on - strandat 176.445 kb on - strandat 176.475 kb on + strandat 176.483 kb on - strandat 176.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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173,587 - MPMX20_00166 0.77 -3.1
173,587 - MPMX20_00166 0.77 -1.0
173,598 + MPMX20_00166 0.77 -2.3
173,598 + MPMX20_00166 0.77 -4.0
173,609 + MPMX20_00166 0.78 -3.8
173,609 + MPMX20_00166 0.78 -1.7
173,617 - MPMX20_00166 0.79 -3.5
173,622 + MPMX20_00166 0.79 -2.6
173,640 - MPMX20_00166 0.80 -2.8
173,668 - MPMX20_00166 0.82 -1.5
173,732 + MPMX20_00166 0.87 -4.3
173,746 + MPMX20_00166 0.88 -3.3
173,746 + MPMX20_00166 0.88 -3.2
173,772 - MPMX20_00166 0.89 -0.4
173,820 + -4.4
173,834 + -3.9
173,874 + -3.8
173,945 + -0.0
173,946 + +0.3
173,979 - -1.3
174,000 + +2.2
174,000 + +0.2
174,002 + -0.4
174,112 + MPMX20_00167 0.15 +2.0
174,137 + MPMX20_00167 0.20 +0.6
174,137 + MPMX20_00167 0.20 -1.7
174,145 - MPMX20_00167 0.21 -1.2
174,197 - MPMX20_00167 0.31 -1.7
174,197 - MPMX20_00167 0.31 -0.1
174,197 - MPMX20_00167 0.31 +1.2
174,339 - MPMX20_00167 0.57 -1.7
174,339 - MPMX20_00167 0.57 -1.6
174,366 + MPMX20_00167 0.62 +0.3
174,366 + MPMX20_00167 0.62 -0.5
174,366 + MPMX20_00167 0.62 -0.9
174,366 + MPMX20_00167 0.62 +0.8
174,366 + MPMX20_00167 0.62 -1.9
174,392 + MPMX20_00167 0.67 -0.4
174,397 + MPMX20_00167 0.68 -1.2
174,405 - MPMX20_00167 0.69 +0.2
174,405 - MPMX20_00167 0.69 +0.1
174,407 + MPMX20_00167 0.70 -0.1
174,415 - MPMX20_00167 0.71 -0.2
174,415 - MPMX20_00167 0.71 -0.1
174,415 - MPMX20_00167 0.71 -1.3
174,415 - MPMX20_00167 0.71 +0.6
174,415 - MPMX20_00167 0.71 +0.8
174,422 - MPMX20_00167 0.73 +1.0
174,466 + MPMX20_00167 0.81 -0.2
174,564 + +1.1
174,624 - -0.5
174,635 - -0.1
174,670 + MPMX20_00168 0.11 -0.6
174,670 + MPMX20_00168 0.11 -1.4
174,715 + MPMX20_00168 0.16 -0.0
174,726 + MPMX20_00168 0.17 +0.2
174,734 - MPMX20_00168 0.18 -1.0
174,894 + MPMX20_00168 0.35 -0.8
174,902 - MPMX20_00168 0.36 +0.7
174,902 - MPMX20_00168 0.36 -0.6
174,902 - MPMX20_00168 0.36 +0.3
174,933 + MPMX20_00168 0.40 -2.4
174,943 + MPMX20_00168 0.41 -2.4
174,945 + MPMX20_00168 0.41 -1.4
174,951 - MPMX20_00168 0.41 +0.5
175,037 + MPMX20_00168 0.51 -0.3
175,045 - MPMX20_00168 0.52 -0.9
175,079 - MPMX20_00168 0.55 -0.0
175,079 - MPMX20_00168 0.55 +0.5
175,089 - MPMX20_00168 0.56 -1.3
175,155 + MPMX20_00168 0.64 -0.1
175,242 + MPMX20_00168 0.73 +2.1
175,259 + MPMX20_00168 0.75 +0.6
175,267 - MPMX20_00168 0.76 -1.1
175,267 - MPMX20_00168 0.76 -0.4
175,356 + MPMX20_00168 0.85 +0.7
175,356 + MPMX20_00168 0.85 -0.5
175,410 + +0.7
175,415 + +0.1
175,418 - -1.5
175,418 - +0.3
175,418 - -0.5
175,464 - +0.5
175,479 + +0.2
175,479 + -0.6
175,507 + -0.4
175,520 + -0.7
175,520 + +0.2
175,666 - MPMX20_00169 0.18 +1.5
175,690 - MPMX20_00169 0.21 +0.5
175,728 + MPMX20_00169 0.25 -1.5
175,740 + MPMX20_00169 0.26 +2.0
175,740 + MPMX20_00169 0.26 +0.4
175,740 + MPMX20_00169 0.26 -0.2
175,740 + MPMX20_00169 0.26 -1.2
175,740 + MPMX20_00169 0.26 -0.6
175,740 + MPMX20_00169 0.26 +0.8
175,740 + MPMX20_00169 0.26 -0.8
175,740 + MPMX20_00169 0.26 -1.9
175,748 - MPMX20_00169 0.27 +0.8
175,748 - MPMX20_00169 0.27 +3.2
175,748 - MPMX20_00169 0.27 +1.5
175,850 + MPMX20_00169 0.37 -0.2
175,850 + MPMX20_00169 0.37 +1.6
175,858 - MPMX20_00169 0.38 +1.5
175,858 - MPMX20_00169 0.38 +0.2
175,920 + MPMX20_00169 0.44 +1.2
175,921 - MPMX20_00169 0.44 -0.2
175,930 + MPMX20_00169 0.45 -2.7
176,073 - MPMX20_00169 0.59 -1.7
176,073 - MPMX20_00169 0.59 +0.2
176,154 + MPMX20_00169 0.67 -1.8
176,162 - MPMX20_00169 0.68 +2.2
176,173 + MPMX20_00169 0.69 -2.2
176,183 + MPMX20_00169 0.70 -0.7
176,187 + MPMX20_00169 0.71 +0.4
176,192 + MPMX20_00169 0.71 -0.9
176,200 - MPMX20_00169 0.72 -0.9
176,200 - MPMX20_00169 0.72 -0.3
176,202 + MPMX20_00169 0.72 -1.5
176,208 + MPMX20_00169 0.73 +0.3
176,208 + MPMX20_00169 0.73 +0.7
176,210 - MPMX20_00169 0.73 -2.7
176,210 - MPMX20_00169 0.73 +1.1
176,220 + MPMX20_00169 0.74 -0.7
176,220 + MPMX20_00169 0.74 -0.9
176,228 - MPMX20_00169 0.75 +2.2
176,228 - MPMX20_00169 0.75 -0.3
176,315 - MPMX20_00169 0.84 -1.4
176,320 - MPMX20_00169 0.84 -0.0
176,322 + MPMX20_00169 0.84 +0.7
176,335 + MPMX20_00169 0.86 -0.1
176,337 + MPMX20_00169 0.86 -1.4
176,337 + MPMX20_00169 0.86 -0.0
176,363 + MPMX20_00169 0.88 -0.8
176,369 + MPMX20_00169 0.89 +0.2
176,369 + MPMX20_00169 0.89 -0.1
176,369 + MPMX20_00169 0.89 -0.2
176,371 - MPMX20_00169 0.89 +0.8
176,377 - MPMX20_00169 0.90 +0.5
176,377 - MPMX20_00169 0.90 -1.5
176,377 - MPMX20_00169 0.90 -0.4
176,379 + +0.5
176,423 + +1.3
176,431 - +0.6
176,442 - +2.0
176,445 - -1.6
176,475 + +0.7
176,483 - -2.1
176,483 - +0.8

Or see this region's nucleotide sequence