Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00066

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00065 and MPMX20_00066 are separated by 198 nucleotidesMPMX20_00066 and MPMX20_00067 are separated by 94 nucleotidesMPMX20_00067 and MPMX20_00068 are separated by 26 nucleotides MPMX20_00065: MPMX20_00065 - Purine ribonucleoside efflux pump NepI, at 66,057 to 67,253 _00065 MPMX20_00066: MPMX20_00066 - HTH-type transcriptional regulator PgrR, at 67,452 to 68,339 _00066 MPMX20_00067: MPMX20_00067 - hypothetical protein, at 68,434 to 69,213 _00067 MPMX20_00068: MPMX20_00068 - HTH-type transcriptional regulator CdhR, at 69,240 to 70,193 _00068 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 66.490 kb on + strand, within MPMX20_00065at 66.523 kb on + strand, within MPMX20_00065at 66.544 kb on + strand, within MPMX20_00065at 66.546 kb on + strand, within MPMX20_00065at 66.554 kb on - strand, within MPMX20_00065at 66.613 kb on + strand, within MPMX20_00065at 66.621 kb on - strand, within MPMX20_00065at 66.621 kb on - strand, within MPMX20_00065at 66.623 kb on + strand, within MPMX20_00065at 66.666 kb on + strand, within MPMX20_00065at 66.674 kb on - strand, within MPMX20_00065at 66.674 kb on - strand, within MPMX20_00065at 66.683 kb on + strand, within MPMX20_00065at 66.724 kb on - strand, within MPMX20_00065at 66.726 kb on + strand, within MPMX20_00065at 66.734 kb on - strand, within MPMX20_00065at 66.829 kb on + strand, within MPMX20_00065at 66.837 kb on - strand, within MPMX20_00065at 66.925 kb on + strand, within MPMX20_00065at 66.939 kb on + strand, within MPMX20_00065at 66.942 kb on - strand, within MPMX20_00065at 66.947 kb on - strand, within MPMX20_00065at 66.947 kb on - strand, within MPMX20_00065at 66.952 kb on + strand, within MPMX20_00065at 66.960 kb on - strand, within MPMX20_00065at 67.003 kb on + strand, within MPMX20_00065at 67.136 kb on + strandat 67.174 kb on - strandat 67.174 kb on - strandat 67.191 kb on - strandat 67.215 kb on + strandat 67.241 kb on + strandat 67.263 kb on - strandat 67.292 kb on + strandat 67.292 kb on + strandat 67.292 kb on + strandat 67.300 kb on - strandat 67.300 kb on - strandat 67.300 kb on - strandat 67.300 kb on - strandat 67.300 kb on - strandat 67.331 kb on + strandat 67.339 kb on - strandat 67.355 kb on + strandat 67.355 kb on + strandat 67.363 kb on - strandat 67.363 kb on - strandat 67.363 kb on - strandat 67.507 kb on + strandat 67.507 kb on + strandat 67.516 kb on - strandat 67.546 kb on - strand, within MPMX20_00066at 67.549 kb on + strand, within MPMX20_00066at 67.556 kb on - strand, within MPMX20_00066at 67.557 kb on - strand, within MPMX20_00066at 67.557 kb on - strand, within MPMX20_00066at 67.557 kb on - strand, within MPMX20_00066at 67.567 kb on - strand, within MPMX20_00066at 67.567 kb on - strand, within MPMX20_00066at 67.601 kb on + strand, within MPMX20_00066at 67.620 kb on + strand, within MPMX20_00066at 67.945 kb on - strand, within MPMX20_00066at 67.972 kb on - strand, within MPMX20_00066at 68.005 kb on + strand, within MPMX20_00066at 68.005 kb on + strand, within MPMX20_00066at 68.013 kb on - strand, within MPMX20_00066at 68.018 kb on + strand, within MPMX20_00066at 68.023 kb on + strand, within MPMX20_00066at 68.031 kb on - strand, within MPMX20_00066at 68.031 kb on - strand, within MPMX20_00066at 68.083 kb on + strand, within MPMX20_00066at 68.128 kb on - strand, within MPMX20_00066at 68.151 kb on + strand, within MPMX20_00066at 68.208 kb on + strand, within MPMX20_00066at 68.237 kb on + strand, within MPMX20_00066at 68.374 kb on - strandat 68.392 kb on + strandat 68.405 kb on - strandat 68.405 kb on - strandat 68.459 kb on + strandat 68.474 kb on - strandat 68.482 kb on + strandat 68.501 kb on + strandat 68.501 kb on + strandat 68.501 kb on + strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.509 kb on - strandat 68.527 kb on + strand, within MPMX20_00067at 68.593 kb on - strand, within MPMX20_00067at 68.612 kb on - strand, within MPMX20_00067at 68.612 kb on - strand, within MPMX20_00067at 68.612 kb on - strand, within MPMX20_00067at 68.630 kb on + strand, within MPMX20_00067at 68.665 kb on + strand, within MPMX20_00067at 68.687 kb on + strand, within MPMX20_00067at 68.724 kb on + strand, within MPMX20_00067at 68.740 kb on - strand, within MPMX20_00067at 68.745 kb on - strand, within MPMX20_00067at 68.756 kb on - strand, within MPMX20_00067at 68.837 kb on - strand, within MPMX20_00067at 68.863 kb on + strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.871 kb on - strand, within MPMX20_00067at 68.881 kb on + strand, within MPMX20_00067at 68.915 kb on - strand, within MPMX20_00067at 68.928 kb on + strand, within MPMX20_00067at 68.977 kb on + strand, within MPMX20_00067at 68.985 kb on + strand, within MPMX20_00067at 68.999 kb on + strand, within MPMX20_00067at 69.007 kb on - strand, within MPMX20_00067at 69.038 kb on + strand, within MPMX20_00067at 69.038 kb on + strand, within MPMX20_00067at 69.118 kb on + strand, within MPMX20_00067at 69.126 kb on - strand, within MPMX20_00067at 69.128 kb on + strand, within MPMX20_00067at 69.128 kb on + strand, within MPMX20_00067at 69.136 kb on - strandat 69.138 kb on + strandat 69.162 kb on + strandat 69.212 kb on + strandat 69.243 kb on + strandat 69.251 kb on - strandat 69.281 kb on - strandat 69.285 kb on - strandat 69.285 kb on - strandat 69.290 kb on + strandat 69.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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66,490 + MPMX20_00065 0.36 -0.4
66,523 + MPMX20_00065 0.39 -1.0
66,544 + MPMX20_00065 0.41 -1.1
66,546 + MPMX20_00065 0.41 +1.8
66,554 - MPMX20_00065 0.42 +0.6
66,613 + MPMX20_00065 0.46 +0.6
66,621 - MPMX20_00065 0.47 -1.5
66,621 - MPMX20_00065 0.47 -0.1
66,623 + MPMX20_00065 0.47 -0.8
66,666 + MPMX20_00065 0.51 +2.2
66,674 - MPMX20_00065 0.52 -0.1
66,674 - MPMX20_00065 0.52 -0.1
66,683 + MPMX20_00065 0.52 -0.1
66,724 - MPMX20_00065 0.56 +0.8
66,726 + MPMX20_00065 0.56 +0.9
66,734 - MPMX20_00065 0.57 +0.0
66,829 + MPMX20_00065 0.64 +0.9
66,837 - MPMX20_00065 0.65 -1.6
66,925 + MPMX20_00065 0.73 -0.4
66,939 + MPMX20_00065 0.74 -0.5
66,942 - MPMX20_00065 0.74 -0.7
66,947 - MPMX20_00065 0.74 -0.4
66,947 - MPMX20_00065 0.74 +0.1
66,952 + MPMX20_00065 0.75 +2.2
66,960 - MPMX20_00065 0.75 +1.7
67,003 + MPMX20_00065 0.79 -1.6
67,136 + -1.3
67,174 - +2.8
67,174 - -1.0
67,191 - -0.8
67,215 + -1.4
67,241 + -0.4
67,263 - +0.4
67,292 + -0.2
67,292 + -1.4
67,292 + -0.3
67,300 - +1.0
67,300 - +0.2
67,300 - +1.9
67,300 - -0.4
67,300 - +0.6
67,331 + +0.0
67,339 - -1.7
67,355 + -1.1
67,355 + +1.6
67,363 - -0.8
67,363 - +0.4
67,363 - +0.7
67,507 + -1.0
67,507 + -2.4
67,516 - +0.0
67,546 - MPMX20_00066 0.11 -0.2
67,549 + MPMX20_00066 0.11 -0.0
67,556 - MPMX20_00066 0.12 +0.4
67,557 - MPMX20_00066 0.12 +0.1
67,557 - MPMX20_00066 0.12 -0.4
67,557 - MPMX20_00066 0.12 -1.8
67,567 - MPMX20_00066 0.13 -0.1
67,567 - MPMX20_00066 0.13 -0.9
67,601 + MPMX20_00066 0.17 +1.4
67,620 + MPMX20_00066 0.19 -0.1
67,945 - MPMX20_00066 0.56 -0.2
67,972 - MPMX20_00066 0.59 +1.2
68,005 + MPMX20_00066 0.62 -0.4
68,005 + MPMX20_00066 0.62 -0.7
68,013 - MPMX20_00066 0.63 +1.3
68,018 + MPMX20_00066 0.64 -0.8
68,023 + MPMX20_00066 0.64 -0.9
68,031 - MPMX20_00066 0.65 +2.2
68,031 - MPMX20_00066 0.65 +1.4
68,083 + MPMX20_00066 0.71 +0.8
68,128 - MPMX20_00066 0.76 -0.2
68,151 + MPMX20_00066 0.79 -1.4
68,208 + MPMX20_00066 0.85 -0.4
68,237 + MPMX20_00066 0.88 +0.8
68,374 - +0.3
68,392 + -0.7
68,405 - -0.1
68,405 - +0.6
68,459 + -0.1
68,474 - +0.6
68,482 + -0.2
68,501 + +0.2
68,501 + -0.3
68,501 + +0.6
68,509 - +0.5
68,509 - -2.1
68,509 - -0.4
68,509 - +0.3
68,509 - -0.2
68,527 + MPMX20_00067 0.12 -0.2
68,593 - MPMX20_00067 0.20 -0.5
68,612 - MPMX20_00067 0.23 +0.5
68,612 - MPMX20_00067 0.23 -1.5
68,612 - MPMX20_00067 0.23 -0.9
68,630 + MPMX20_00067 0.25 -0.7
68,665 + MPMX20_00067 0.30 -0.0
68,687 + MPMX20_00067 0.32 +0.1
68,724 + MPMX20_00067 0.37 -0.1
68,740 - MPMX20_00067 0.39 -0.8
68,745 - MPMX20_00067 0.40 -1.1
68,756 - MPMX20_00067 0.41 -0.1
68,837 - MPMX20_00067 0.52 -0.5
68,863 + MPMX20_00067 0.55 -0.6
68,871 - MPMX20_00067 0.56 -0.1
68,871 - MPMX20_00067 0.56 +0.0
68,871 - MPMX20_00067 0.56 -2.8
68,871 - MPMX20_00067 0.56 -0.4
68,881 + MPMX20_00067 0.57 -0.1
68,915 - MPMX20_00067 0.62 -1.2
68,928 + MPMX20_00067 0.63 -0.6
68,977 + MPMX20_00067 0.70 -0.8
68,985 + MPMX20_00067 0.71 -1.6
68,999 + MPMX20_00067 0.72 -0.8
69,007 - MPMX20_00067 0.73 +0.1
69,038 + MPMX20_00067 0.77 -1.6
69,038 + MPMX20_00067 0.77 -1.2
69,118 + MPMX20_00067 0.88 +0.5
69,126 - MPMX20_00067 0.89 +0.3
69,128 + MPMX20_00067 0.89 +0.5
69,128 + MPMX20_00067 0.89 -2.8
69,136 - +1.7
69,138 + -0.2
69,162 + -1.6
69,212 + +1.5
69,243 + -1.6
69,251 - -1.2
69,281 - +2.6
69,285 - -1.6
69,285 - -1.1
69,290 + -0.3
69,327 - -1.3

Or see this region's nucleotide sequence