Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04598

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04597 and MPMX20_04598 are separated by 285 nucleotidesMPMX20_04598 and MPMX20_04599 are separated by 188 nucleotides MPMX20_04597: MPMX20_04597 - DNA-binding transcriptional regulator NtrC, at 4,811,846 to 4,813,258 _04597 MPMX20_04598: MPMX20_04598 - Oxygen-independent coproporphyrinogen III oxidase, at 4,813,544 to 4,814,917 _04598 MPMX20_04599: MPMX20_04599 - Der GTPase-activating protein YihI, at 4,815,106 to 4,815,621 _04599 Position (kb) 4813 4814 4815Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4812.578 kb on - strand, within MPMX20_04597at 4812.587 kb on + strand, within MPMX20_04597at 4812.595 kb on - strand, within MPMX20_04597at 4812.595 kb on - strand, within MPMX20_04597at 4812.595 kb on - strand, within MPMX20_04597at 4812.716 kb on + strand, within MPMX20_04597at 4812.744 kb on + strand, within MPMX20_04597at 4812.842 kb on - strand, within MPMX20_04597at 4812.860 kb on + strand, within MPMX20_04597at 4812.876 kb on - strand, within MPMX20_04597at 4812.884 kb on + strand, within MPMX20_04597at 4812.884 kb on + strand, within MPMX20_04597at 4812.892 kb on - strand, within MPMX20_04597at 4812.893 kb on + strand, within MPMX20_04597at 4812.936 kb on + strand, within MPMX20_04597at 4812.956 kb on - strand, within MPMX20_04597at 4813.048 kb on + strand, within MPMX20_04597at 4813.098 kb on - strand, within MPMX20_04597at 4813.108 kb on - strand, within MPMX20_04597at 4813.145 kb on + strandat 4813.147 kb on + strandat 4813.152 kb on + strandat 4813.153 kb on - strandat 4813.153 kb on - strandat 4813.153 kb on - strandat 4813.153 kb on - strandat 4813.258 kb on + strandat 4813.259 kb on + strandat 4813.270 kb on + strandat 4813.270 kb on + strandat 4813.278 kb on - strandat 4813.408 kb on + strandat 4813.416 kb on - strandat 4813.416 kb on - strandat 4813.439 kb on + strandat 4813.447 kb on - strandat 4813.447 kb on - strandat 4813.461 kb on + strandat 4813.509 kb on + strandat 4813.643 kb on + strandat 4813.702 kb on + strand, within MPMX20_04598at 4813.749 kb on + strand, within MPMX20_04598at 4813.839 kb on - strand, within MPMX20_04598at 4813.902 kb on - strand, within MPMX20_04598at 4813.965 kb on - strand, within MPMX20_04598at 4813.967 kb on + strand, within MPMX20_04598at 4813.972 kb on + strand, within MPMX20_04598at 4813.975 kb on - strand, within MPMX20_04598at 4813.976 kb on + strand, within MPMX20_04598at 4814.007 kb on + strand, within MPMX20_04598at 4814.007 kb on + strand, within MPMX20_04598at 4814.131 kb on - strand, within MPMX20_04598at 4814.258 kb on + strand, within MPMX20_04598at 4814.263 kb on - strand, within MPMX20_04598at 4814.265 kb on - strand, within MPMX20_04598at 4814.305 kb on + strand, within MPMX20_04598at 4814.305 kb on + strand, within MPMX20_04598at 4814.313 kb on - strand, within MPMX20_04598at 4814.313 kb on - strand, within MPMX20_04598at 4814.313 kb on - strand, within MPMX20_04598at 4814.409 kb on + strand, within MPMX20_04598at 4814.459 kb on - strand, within MPMX20_04598at 4814.589 kb on - strand, within MPMX20_04598at 4814.726 kb on - strand, within MPMX20_04598at 4814.738 kb on - strand, within MPMX20_04598at 4814.777 kb on + strand, within MPMX20_04598at 4814.835 kb on + strandat 4814.846 kb on - strandat 4814.847 kb on - strandat 4814.855 kb on - strandat 4814.908 kb on + strandat 4814.916 kb on - strandat 4814.917 kb on + strandat 4814.931 kb on - strandat 4815.078 kb on + strandat 4815.078 kb on + strandat 4815.176 kb on + strand, within MPMX20_04599at 4815.176 kb on + strand, within MPMX20_04599at 4815.184 kb on - strand, within MPMX20_04599at 4815.184 kb on - strand, within MPMX20_04599at 4815.186 kb on + strand, within MPMX20_04599at 4815.225 kb on - strand, within MPMX20_04599at 4815.233 kb on + strand, within MPMX20_04599at 4815.233 kb on + strand, within MPMX20_04599at 4815.233 kb on + strand, within MPMX20_04599at 4815.241 kb on - strand, within MPMX20_04599at 4815.241 kb on - strand, within MPMX20_04599at 4815.246 kb on + strand, within MPMX20_04599at 4815.268 kb on - strand, within MPMX20_04599at 4815.270 kb on + strand, within MPMX20_04599at 4815.278 kb on - strand, within MPMX20_04599at 4815.278 kb on - strand, within MPMX20_04599at 4815.490 kb on + strand, within MPMX20_04599at 4815.498 kb on - strand, within MPMX20_04599at 4815.498 kb on - strand, within MPMX20_04599at 4815.586 kb on + strandat 4815.651 kb on + strandat 4815.651 kb on + strandat 4815.651 kb on + strandat 4815.659 kb on - strandat 4815.659 kb on - strandat 4815.659 kb on - strandat 4815.746 kb on + strandat 4815.746 kb on + strandat 4815.754 kb on - strandat 4815.792 kb on + strandat 4815.800 kb on - strandat 4815.813 kb on + strandat 4815.884 kb on + strandat 4815.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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4,812,578 - MPMX20_04597 0.52 +0.9
4,812,587 + MPMX20_04597 0.52 +0.9
4,812,595 - MPMX20_04597 0.53 -3.4
4,812,595 - MPMX20_04597 0.53 -2.2
4,812,595 - MPMX20_04597 0.53 +1.1
4,812,716 + MPMX20_04597 0.62 -2.4
4,812,744 + MPMX20_04597 0.64 +0.2
4,812,842 - MPMX20_04597 0.70 +0.5
4,812,860 + MPMX20_04597 0.72 -2.0
4,812,876 - MPMX20_04597 0.73 -4.9
4,812,884 + MPMX20_04597 0.73 +0.5
4,812,884 + MPMX20_04597 0.73 -3.3
4,812,892 - MPMX20_04597 0.74 +0.2
4,812,893 + MPMX20_04597 0.74 -0.9
4,812,936 + MPMX20_04597 0.77 +0.2
4,812,956 - MPMX20_04597 0.79 +0.7
4,813,048 + MPMX20_04597 0.85 +3.1
4,813,098 - MPMX20_04597 0.89 +2.4
4,813,108 - MPMX20_04597 0.89 +1.4
4,813,145 + -3.6
4,813,147 + -0.7
4,813,152 + +0.2
4,813,153 - -1.1
4,813,153 - -1.7
4,813,153 - -0.3
4,813,153 - -1.6
4,813,258 + +0.0
4,813,259 + -0.5
4,813,270 + -0.0
4,813,270 + +1.7
4,813,278 - +0.5
4,813,408 + -2.7
4,813,416 - +1.6
4,813,416 - +1.2
4,813,439 + +1.3
4,813,447 - +0.3
4,813,447 - -0.2
4,813,461 + +1.1
4,813,509 + +0.2
4,813,643 + -1.1
4,813,702 + MPMX20_04598 0.11 -2.1
4,813,749 + MPMX20_04598 0.15 +0.8
4,813,839 - MPMX20_04598 0.21 -3.2
4,813,902 - MPMX20_04598 0.26 -2.8
4,813,965 - MPMX20_04598 0.31 -4.5
4,813,967 + MPMX20_04598 0.31 +1.6
4,813,972 + MPMX20_04598 0.31 -0.1
4,813,975 - MPMX20_04598 0.31 -2.4
4,813,976 + MPMX20_04598 0.31 -0.4
4,814,007 + MPMX20_04598 0.34 -3.1
4,814,007 + MPMX20_04598 0.34 -3.6
4,814,131 - MPMX20_04598 0.43 -0.1
4,814,258 + MPMX20_04598 0.52 -0.9
4,814,263 - MPMX20_04598 0.52 -4.3
4,814,265 - MPMX20_04598 0.52 -0.7
4,814,305 + MPMX20_04598 0.55 -1.9
4,814,305 + MPMX20_04598 0.55 -0.1
4,814,313 - MPMX20_04598 0.56 -1.7
4,814,313 - MPMX20_04598 0.56 -1.9
4,814,313 - MPMX20_04598 0.56 +0.4
4,814,409 + MPMX20_04598 0.63 -3.3
4,814,459 - MPMX20_04598 0.67 -3.7
4,814,589 - MPMX20_04598 0.76 -2.2
4,814,726 - MPMX20_04598 0.86 -0.4
4,814,738 - MPMX20_04598 0.87 -1.6
4,814,777 + MPMX20_04598 0.90 -2.5
4,814,835 + -0.0
4,814,846 - -3.3
4,814,847 - -0.7
4,814,855 - -1.5
4,814,908 + -4.0
4,814,916 - -0.4
4,814,917 + -3.3
4,814,931 - +0.4
4,815,078 + -4.1
4,815,078 + -3.0
4,815,176 + MPMX20_04599 0.14 -0.7
4,815,176 + MPMX20_04599 0.14 +0.9
4,815,184 - MPMX20_04599 0.15 +0.2
4,815,184 - MPMX20_04599 0.15 -2.5
4,815,186 + MPMX20_04599 0.16 +0.1
4,815,225 - MPMX20_04599 0.23 +1.8
4,815,233 + MPMX20_04599 0.25 -1.5
4,815,233 + MPMX20_04599 0.25 +2.2
4,815,233 + MPMX20_04599 0.25 -1.5
4,815,241 - MPMX20_04599 0.26 -1.5
4,815,241 - MPMX20_04599 0.26 -2.9
4,815,246 + MPMX20_04599 0.27 -0.1
4,815,268 - MPMX20_04599 0.31 -0.8
4,815,270 + MPMX20_04599 0.32 +2.5
4,815,278 - MPMX20_04599 0.33 +0.8
4,815,278 - MPMX20_04599 0.33 +0.2
4,815,490 + MPMX20_04599 0.74 +1.2
4,815,498 - MPMX20_04599 0.76 +1.2
4,815,498 - MPMX20_04599 0.76 -1.5
4,815,586 + +0.7
4,815,651 + -2.9
4,815,651 + -3.8
4,815,651 + -3.7
4,815,659 - +0.4
4,815,659 - -1.8
4,815,659 - +0.7
4,815,746 + -1.1
4,815,746 + +0.7
4,815,754 - -2.0
4,815,792 + -0.8
4,815,800 - +0.5
4,815,813 + +0.5
4,815,884 + -0.7
4,815,891 + -1.0

Or see this region's nucleotide sequence