Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04597 and MPMX20_04598 are separated by 285 nucleotides MPMX20_04598 and MPMX20_04599 are separated by 188 nucleotides
MPMX20_04597: MPMX20_04597 - DNA-binding transcriptional regulator NtrC, at 4,811,846 to 4,813,258
_04597
MPMX20_04598: MPMX20_04598 - Oxygen-independent coproporphyrinogen III oxidase, at 4,813,544 to 4,814,917
_04598
MPMX20_04599: MPMX20_04599 - Der GTPase-activating protein YihI, at 4,815,106 to 4,815,621
_04599
Position (kb)
4813
4814
4815 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 4812.578 kb on - strand, within MPMX20_04597 at 4812.587 kb on + strand, within MPMX20_04597 at 4812.595 kb on - strand, within MPMX20_04597 at 4812.595 kb on - strand, within MPMX20_04597 at 4812.595 kb on - strand, within MPMX20_04597 at 4812.716 kb on + strand, within MPMX20_04597 at 4812.744 kb on + strand, within MPMX20_04597 at 4812.842 kb on - strand, within MPMX20_04597 at 4812.860 kb on + strand, within MPMX20_04597 at 4812.876 kb on - strand, within MPMX20_04597 at 4812.884 kb on + strand, within MPMX20_04597 at 4812.884 kb on + strand, within MPMX20_04597 at 4812.892 kb on - strand, within MPMX20_04597 at 4812.893 kb on + strand, within MPMX20_04597 at 4812.936 kb on + strand, within MPMX20_04597 at 4812.956 kb on - strand, within MPMX20_04597 at 4813.048 kb on + strand, within MPMX20_04597 at 4813.098 kb on - strand, within MPMX20_04597 at 4813.108 kb on - strand, within MPMX20_04597 at 4813.145 kb on + strand at 4813.147 kb on + strand at 4813.152 kb on + strand at 4813.153 kb on - strand at 4813.153 kb on - strand at 4813.153 kb on - strand at 4813.153 kb on - strand at 4813.258 kb on + strand at 4813.259 kb on + strand at 4813.270 kb on + strand at 4813.270 kb on + strand at 4813.278 kb on - strand at 4813.408 kb on + strand at 4813.416 kb on - strand at 4813.416 kb on - strand at 4813.439 kb on + strand at 4813.447 kb on - strand at 4813.447 kb on - strand at 4813.461 kb on + strand at 4813.509 kb on + strand at 4813.643 kb on + strand at 4813.702 kb on + strand, within MPMX20_04598 at 4813.749 kb on + strand, within MPMX20_04598 at 4813.839 kb on - strand, within MPMX20_04598 at 4813.902 kb on - strand, within MPMX20_04598 at 4813.965 kb on - strand, within MPMX20_04598 at 4813.967 kb on + strand, within MPMX20_04598 at 4813.972 kb on + strand, within MPMX20_04598 at 4813.975 kb on - strand, within MPMX20_04598 at 4813.976 kb on + strand, within MPMX20_04598 at 4814.007 kb on + strand, within MPMX20_04598 at 4814.007 kb on + strand, within MPMX20_04598 at 4814.131 kb on - strand, within MPMX20_04598 at 4814.258 kb on + strand, within MPMX20_04598 at 4814.263 kb on - strand, within MPMX20_04598 at 4814.265 kb on - strand, within MPMX20_04598 at 4814.305 kb on + strand, within MPMX20_04598 at 4814.305 kb on + strand, within MPMX20_04598 at 4814.313 kb on - strand, within MPMX20_04598 at 4814.313 kb on - strand, within MPMX20_04598 at 4814.313 kb on - strand, within MPMX20_04598 at 4814.409 kb on + strand, within MPMX20_04598 at 4814.459 kb on - strand, within MPMX20_04598 at 4814.589 kb on - strand, within MPMX20_04598 at 4814.726 kb on - strand, within MPMX20_04598 at 4814.738 kb on - strand, within MPMX20_04598 at 4814.777 kb on + strand, within MPMX20_04598 at 4814.835 kb on + strand at 4814.846 kb on - strand at 4814.847 kb on - strand at 4814.855 kb on - strand at 4814.908 kb on + strand at 4814.916 kb on - strand at 4814.917 kb on + strand at 4814.931 kb on - strand at 4815.078 kb on + strand at 4815.078 kb on + strand at 4815.176 kb on + strand, within MPMX20_04599 at 4815.176 kb on + strand, within MPMX20_04599 at 4815.184 kb on - strand, within MPMX20_04599 at 4815.184 kb on - strand, within MPMX20_04599 at 4815.186 kb on + strand, within MPMX20_04599 at 4815.225 kb on - strand, within MPMX20_04599 at 4815.233 kb on + strand, within MPMX20_04599 at 4815.233 kb on + strand, within MPMX20_04599 at 4815.233 kb on + strand, within MPMX20_04599 at 4815.241 kb on - strand, within MPMX20_04599 at 4815.241 kb on - strand, within MPMX20_04599 at 4815.246 kb on + strand, within MPMX20_04599 at 4815.268 kb on - strand, within MPMX20_04599 at 4815.270 kb on + strand, within MPMX20_04599 at 4815.278 kb on - strand, within MPMX20_04599 at 4815.278 kb on - strand, within MPMX20_04599 at 4815.490 kb on + strand, within MPMX20_04599 at 4815.498 kb on - strand, within MPMX20_04599 at 4815.498 kb on - strand, within MPMX20_04599 at 4815.586 kb on + strand at 4815.651 kb on + strand at 4815.651 kb on + strand at 4815.651 kb on + strand at 4815.659 kb on - strand at 4815.659 kb on - strand at 4815.659 kb on - strand at 4815.746 kb on + strand at 4815.746 kb on + strand at 4815.754 kb on - strand at 4815.792 kb on + strand at 4815.800 kb on - strand at 4815.813 kb on + strand at 4815.884 kb on + strand at 4815.891 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 4,812,578 - MPMX20_04597 0.52 +0.9 4,812,587 + MPMX20_04597 0.52 +0.9 4,812,595 - MPMX20_04597 0.53 -3.4 4,812,595 - MPMX20_04597 0.53 -2.2 4,812,595 - MPMX20_04597 0.53 +1.1 4,812,716 + MPMX20_04597 0.62 -2.4 4,812,744 + MPMX20_04597 0.64 +0.2 4,812,842 - MPMX20_04597 0.70 +0.5 4,812,860 + MPMX20_04597 0.72 -2.0 4,812,876 - MPMX20_04597 0.73 -4.9 4,812,884 + MPMX20_04597 0.73 +0.5 4,812,884 + MPMX20_04597 0.73 -3.3 4,812,892 - MPMX20_04597 0.74 +0.2 4,812,893 + MPMX20_04597 0.74 -0.9 4,812,936 + MPMX20_04597 0.77 +0.2 4,812,956 - MPMX20_04597 0.79 +0.7 4,813,048 + MPMX20_04597 0.85 +3.1 4,813,098 - MPMX20_04597 0.89 +2.4 4,813,108 - MPMX20_04597 0.89 +1.4 4,813,145 + -3.6 4,813,147 + -0.7 4,813,152 + +0.2 4,813,153 - -1.1 4,813,153 - -1.7 4,813,153 - -0.3 4,813,153 - -1.6 4,813,258 + +0.0 4,813,259 + -0.5 4,813,270 + -0.0 4,813,270 + +1.7 4,813,278 - +0.5 4,813,408 + -2.7 4,813,416 - +1.6 4,813,416 - +1.2 4,813,439 + +1.3 4,813,447 - +0.3 4,813,447 - -0.2 4,813,461 + +1.1 4,813,509 + +0.2 4,813,643 + -1.1 4,813,702 + MPMX20_04598 0.11 -2.1 4,813,749 + MPMX20_04598 0.15 +0.8 4,813,839 - MPMX20_04598 0.21 -3.2 4,813,902 - MPMX20_04598 0.26 -2.8 4,813,965 - MPMX20_04598 0.31 -4.5 4,813,967 + MPMX20_04598 0.31 +1.6 4,813,972 + MPMX20_04598 0.31 -0.1 4,813,975 - MPMX20_04598 0.31 -2.4 4,813,976 + MPMX20_04598 0.31 -0.4 4,814,007 + MPMX20_04598 0.34 -3.1 4,814,007 + MPMX20_04598 0.34 -3.6 4,814,131 - MPMX20_04598 0.43 -0.1 4,814,258 + MPMX20_04598 0.52 -0.9 4,814,263 - MPMX20_04598 0.52 -4.3 4,814,265 - MPMX20_04598 0.52 -0.7 4,814,305 + MPMX20_04598 0.55 -1.9 4,814,305 + MPMX20_04598 0.55 -0.1 4,814,313 - MPMX20_04598 0.56 -1.7 4,814,313 - MPMX20_04598 0.56 -1.9 4,814,313 - MPMX20_04598 0.56 +0.4 4,814,409 + MPMX20_04598 0.63 -3.3 4,814,459 - MPMX20_04598 0.67 -3.7 4,814,589 - MPMX20_04598 0.76 -2.2 4,814,726 - MPMX20_04598 0.86 -0.4 4,814,738 - MPMX20_04598 0.87 -1.6 4,814,777 + MPMX20_04598 0.90 -2.5 4,814,835 + -0.0 4,814,846 - -3.3 4,814,847 - -0.7 4,814,855 - -1.5 4,814,908 + -4.0 4,814,916 - -0.4 4,814,917 + -3.3 4,814,931 - +0.4 4,815,078 + -4.1 4,815,078 + -3.0 4,815,176 + MPMX20_04599 0.14 -0.7 4,815,176 + MPMX20_04599 0.14 +0.9 4,815,184 - MPMX20_04599 0.15 +0.2 4,815,184 - MPMX20_04599 0.15 -2.5 4,815,186 + MPMX20_04599 0.16 +0.1 4,815,225 - MPMX20_04599 0.23 +1.8 4,815,233 + MPMX20_04599 0.25 -1.5 4,815,233 + MPMX20_04599 0.25 +2.2 4,815,233 + MPMX20_04599 0.25 -1.5 4,815,241 - MPMX20_04599 0.26 -1.5 4,815,241 - MPMX20_04599 0.26 -2.9 4,815,246 + MPMX20_04599 0.27 -0.1 4,815,268 - MPMX20_04599 0.31 -0.8 4,815,270 + MPMX20_04599 0.32 +2.5 4,815,278 - MPMX20_04599 0.33 +0.8 4,815,278 - MPMX20_04599 0.33 +0.2 4,815,490 + MPMX20_04599 0.74 +1.2 4,815,498 - MPMX20_04599 0.76 +1.2 4,815,498 - MPMX20_04599 0.76 -1.5 4,815,586 + +0.7 4,815,651 + -2.9 4,815,651 + -3.8 4,815,651 + -3.7 4,815,659 - +0.4 4,815,659 - -1.8 4,815,659 - +0.7 4,815,746 + -1.1 4,815,746 + +0.7 4,815,754 - -2.0 4,815,792 + -0.8 4,815,800 - +0.5 4,815,813 + +0.5 4,815,884 + -0.7 4,815,891 + -1.0
Or see this region's nucleotide sequence