Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04472

Experiment: L-Sorbose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04470 and MPMX20_04471 overlap by 4 nucleotidesMPMX20_04471 and MPMX20_04472 are separated by 21 nucleotidesMPMX20_04472 and MPMX20_04473 are separated by 2 nucleotides MPMX20_04470: MPMX20_04470 - Porphobilinogen deaminase, at 4,675,583 to 4,676,545 _04470 MPMX20_04471: MPMX20_04471 - Uroporphyrinogen-III synthase, at 4,676,542 to 4,677,282 _04471 MPMX20_04472: MPMX20_04472 - Protein HemX, at 4,677,304 to 4,678,497 _04472 MPMX20_04473: MPMX20_04473 - Protein HemY, at 4,678,500 to 4,679,699 _04473 Position (kb) 4677 4678 4679Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4677.272 kb on + strandat 4677.315 kb on + strandat 4677.333 kb on + strandat 4677.334 kb on + strandat 4677.342 kb on + strandat 4677.360 kb on + strandat 4677.420 kb on + strandat 4677.521 kb on - strand, within MPMX20_04472at 4677.543 kb on + strand, within MPMX20_04472at 4677.763 kb on - strand, within MPMX20_04472at 4677.763 kb on - strand, within MPMX20_04472at 4677.981 kb on + strand, within MPMX20_04472at 4678.096 kb on + strand, within MPMX20_04472at 4678.177 kb on - strand, within MPMX20_04472at 4678.189 kb on + strand, within MPMX20_04472at 4678.242 kb on + strand, within MPMX20_04472at 4678.247 kb on + strand, within MPMX20_04472at 4678.552 kb on + strandat 4678.594 kb on - strandat 4678.616 kb on - strandat 4678.664 kb on + strand, within MPMX20_04473at 4678.664 kb on - strand, within MPMX20_04473at 4678.750 kb on + strand, within MPMX20_04473at 4678.896 kb on + strand, within MPMX20_04473at 4678.896 kb on + strand, within MPMX20_04473at 4678.904 kb on - strand, within MPMX20_04473at 4678.967 kb on + strand, within MPMX20_04473at 4679.044 kb on - strand, within MPMX20_04473at 4679.064 kb on - strand, within MPMX20_04473at 4679.064 kb on - strand, within MPMX20_04473at 4679.143 kb on + strand, within MPMX20_04473at 4679.146 kb on - strand, within MPMX20_04473at 4679.194 kb on + strand, within MPMX20_04473at 4679.241 kb on + strand, within MPMX20_04473at 4679.321 kb on - strand, within MPMX20_04473at 4679.326 kb on - strand, within MPMX20_04473at 4679.343 kb on + strand, within MPMX20_04473at 4679.348 kb on + strand, within MPMX20_04473at 4679.363 kb on - strand, within MPMX20_04473at 4679.378 kb on + strand, within MPMX20_04473at 4679.393 kb on + strand, within MPMX20_04473at 4679.420 kb on + strand, within MPMX20_04473at 4679.420 kb on - strand, within MPMX20_04473at 4679.433 kb on - strand, within MPMX20_04473at 4679.459 kb on + strand, within MPMX20_04473at 4679.459 kb on + strand, within MPMX20_04473at 4679.467 kb on - strand, within MPMX20_04473at 4679.467 kb on - strand, within MPMX20_04473at 4679.479 kb on + strand, within MPMX20_04473at 4679.484 kb on + strand, within MPMX20_04473at 4679.492 kb on - strand, within MPMX20_04473at 4679.494 kb on - strand, within MPMX20_04473

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
remove
4,677,272 + +1.3
4,677,315 + +1.0
4,677,333 + -0.3
4,677,334 + +0.6
4,677,342 + -0.5
4,677,360 + +0.2
4,677,420 + -3.4
4,677,521 - MPMX20_04472 0.18 -1.8
4,677,543 + MPMX20_04472 0.20 -1.3
4,677,763 - MPMX20_04472 0.38 -0.5
4,677,763 - MPMX20_04472 0.38 -0.2
4,677,981 + MPMX20_04472 0.57 -1.8
4,678,096 + MPMX20_04472 0.66 -2.8
4,678,177 - MPMX20_04472 0.73 -3.4
4,678,189 + MPMX20_04472 0.74 +2.9
4,678,242 + MPMX20_04472 0.79 -0.8
4,678,247 + MPMX20_04472 0.79 -2.0
4,678,552 + +0.2
4,678,594 - -4.3
4,678,616 - +0.8
4,678,664 + MPMX20_04473 0.14 -0.2
4,678,664 - MPMX20_04473 0.14 +0.1
4,678,750 + MPMX20_04473 0.21 -1.5
4,678,896 + MPMX20_04473 0.33 -2.1
4,678,896 + MPMX20_04473 0.33 -1.3
4,678,904 - MPMX20_04473 0.34 +2.2
4,678,967 + MPMX20_04473 0.39 +1.0
4,679,044 - MPMX20_04473 0.45 -2.2
4,679,064 - MPMX20_04473 0.47 +2.3
4,679,064 - MPMX20_04473 0.47 -0.3
4,679,143 + MPMX20_04473 0.54 +0.2
4,679,146 - MPMX20_04473 0.54 +0.7
4,679,194 + MPMX20_04473 0.58 -0.3
4,679,241 + MPMX20_04473 0.62 -0.3
4,679,321 - MPMX20_04473 0.68 +0.2
4,679,326 - MPMX20_04473 0.69 -0.3
4,679,343 + MPMX20_04473 0.70 +1.6
4,679,348 + MPMX20_04473 0.71 +0.3
4,679,363 - MPMX20_04473 0.72 +2.5
4,679,378 + MPMX20_04473 0.73 -2.2
4,679,393 + MPMX20_04473 0.74 +0.4
4,679,420 + MPMX20_04473 0.77 +1.3
4,679,420 - MPMX20_04473 0.77 -0.5
4,679,433 - MPMX20_04473 0.78 -0.3
4,679,459 + MPMX20_04473 0.80 -3.7
4,679,459 + MPMX20_04473 0.80 +1.5
4,679,467 - MPMX20_04473 0.81 -1.0
4,679,467 - MPMX20_04473 0.81 -1.0
4,679,479 + MPMX20_04473 0.82 +1.1
4,679,484 + MPMX20_04473 0.82 -1.8
4,679,492 - MPMX20_04473 0.83 +0.2
4,679,494 - MPMX20_04473 0.83 -3.6

Or see this region's nucleotide sequence