Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04424

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04423 and MPMX20_04424 are separated by 45 nucleotidesMPMX20_04424 and MPMX20_04425 are separated by 6 nucleotidesMPMX20_04425 and MPMX20_04426 overlap by 4 nucleotides MPMX20_04423: MPMX20_04423 - Cellulose biosynthesis protein BcsG, at 4,623,526 to 4,625,205 _04423 MPMX20_04424: MPMX20_04424 - Endoglucanase, at 4,625,251 to 4,626,246 _04424 MPMX20_04425: MPMX20_04425 - Bifunctional ligase/repressor BirA, at 4,626,253 to 4,627,215 _04425 MPMX20_04426: MPMX20_04426 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 4,627,212 to 4,628,240 _04426 Position (kb) 4625 4626 4627Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4624.260 kb on + strand, within MPMX20_04423at 4624.260 kb on + strand, within MPMX20_04423at 4624.260 kb on + strand, within MPMX20_04423at 4624.293 kb on - strand, within MPMX20_04423at 4624.307 kb on + strand, within MPMX20_04423at 4624.335 kb on + strand, within MPMX20_04423at 4624.341 kb on - strand, within MPMX20_04423at 4624.343 kb on - strand, within MPMX20_04423at 4624.343 kb on - strand, within MPMX20_04423at 4624.358 kb on - strand, within MPMX20_04423at 4624.419 kb on + strand, within MPMX20_04423at 4624.518 kb on + strand, within MPMX20_04423at 4624.636 kb on + strand, within MPMX20_04423at 4624.644 kb on - strand, within MPMX20_04423at 4624.647 kb on + strand, within MPMX20_04423at 4624.682 kb on + strand, within MPMX20_04423at 4624.682 kb on + strand, within MPMX20_04423at 4624.690 kb on - strand, within MPMX20_04423at 4624.690 kb on - strand, within MPMX20_04423at 4624.725 kb on + strand, within MPMX20_04423at 4624.725 kb on - strand, within MPMX20_04423at 4624.877 kb on + strand, within MPMX20_04423at 4624.884 kb on + strand, within MPMX20_04423at 4624.885 kb on - strand, within MPMX20_04423at 4624.886 kb on + strand, within MPMX20_04423at 4624.892 kb on - strand, within MPMX20_04423at 4624.892 kb on - strand, within MPMX20_04423at 4624.899 kb on - strand, within MPMX20_04423at 4624.966 kb on + strand, within MPMX20_04423at 4624.966 kb on + strand, within MPMX20_04423at 4624.974 kb on - strand, within MPMX20_04423at 4625.095 kb on - strandat 4625.095 kb on - strandat 4625.095 kb on - strandat 4625.223 kb on + strandat 4625.223 kb on + strandat 4625.231 kb on - strandat 4625.268 kb on + strandat 4625.325 kb on - strandat 4625.330 kb on + strandat 4625.438 kb on + strand, within MPMX20_04424at 4625.485 kb on + strand, within MPMX20_04424at 4625.495 kb on + strand, within MPMX20_04424at 4625.495 kb on + strand, within MPMX20_04424at 4625.495 kb on + strand, within MPMX20_04424at 4625.495 kb on + strand, within MPMX20_04424at 4625.503 kb on - strand, within MPMX20_04424at 4625.503 kb on - strand, within MPMX20_04424at 4625.551 kb on + strand, within MPMX20_04424at 4625.551 kb on + strand, within MPMX20_04424at 4625.674 kb on - strand, within MPMX20_04424at 4625.769 kb on - strand, within MPMX20_04424at 4625.857 kb on - strand, within MPMX20_04424at 4625.882 kb on + strand, within MPMX20_04424at 4625.890 kb on - strand, within MPMX20_04424at 4625.890 kb on - strand, within MPMX20_04424at 4625.900 kb on - strand, within MPMX20_04424at 4625.960 kb on + strand, within MPMX20_04424at 4625.969 kb on - strand, within MPMX20_04424at 4626.058 kb on - strand, within MPMX20_04424at 4626.079 kb on + strand, within MPMX20_04424at 4626.138 kb on + strand, within MPMX20_04424at 4626.169 kb on + strandat 4626.169 kb on + strandat 4626.169 kb on + strandat 4626.177 kb on - strandat 4626.199 kb on + strandat 4626.225 kb on - strandat 4626.237 kb on - strandat 4627.202 kb on + strandat 4627.202 kb on + strandat 4627.210 kb on - strandat 4627.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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4,624,260 + MPMX20_04423 0.44 +0.1
4,624,260 + MPMX20_04423 0.44 -0.8
4,624,260 + MPMX20_04423 0.44 +1.2
4,624,293 - MPMX20_04423 0.46 -0.3
4,624,307 + MPMX20_04423 0.46 +0.3
4,624,335 + MPMX20_04423 0.48 +0.5
4,624,341 - MPMX20_04423 0.49 -1.0
4,624,343 - MPMX20_04423 0.49 -0.5
4,624,343 - MPMX20_04423 0.49 -0.7
4,624,358 - MPMX20_04423 0.50 +0.5
4,624,419 + MPMX20_04423 0.53 +0.3
4,624,518 + MPMX20_04423 0.59 -0.5
4,624,636 + MPMX20_04423 0.66 -0.9
4,624,644 - MPMX20_04423 0.67 +0.1
4,624,647 + MPMX20_04423 0.67 -0.4
4,624,682 + MPMX20_04423 0.69 +0.9
4,624,682 + MPMX20_04423 0.69 +0.2
4,624,690 - MPMX20_04423 0.69 -0.1
4,624,690 - MPMX20_04423 0.69 -2.4
4,624,725 + MPMX20_04423 0.71 +0.8
4,624,725 - MPMX20_04423 0.71 +0.3
4,624,877 + MPMX20_04423 0.80 +1.0
4,624,884 + MPMX20_04423 0.81 +2.1
4,624,885 - MPMX20_04423 0.81 +2.5
4,624,886 + MPMX20_04423 0.81 +1.2
4,624,892 - MPMX20_04423 0.81 +0.9
4,624,892 - MPMX20_04423 0.81 +1.6
4,624,899 - MPMX20_04423 0.82 +0.0
4,624,966 + MPMX20_04423 0.86 +0.8
4,624,966 + MPMX20_04423 0.86 +2.3
4,624,974 - MPMX20_04423 0.86 +0.2
4,625,095 - +1.2
4,625,095 - +1.5
4,625,095 - -0.2
4,625,223 + +0.6
4,625,223 + -1.4
4,625,231 - -2.1
4,625,268 + -0.5
4,625,325 - -0.1
4,625,330 + -1.0
4,625,438 + MPMX20_04424 0.19 -1.0
4,625,485 + MPMX20_04424 0.23 +1.5
4,625,495 + MPMX20_04424 0.24 +3.0
4,625,495 + MPMX20_04424 0.24 +0.2
4,625,495 + MPMX20_04424 0.24 -1.3
4,625,495 + MPMX20_04424 0.24 +0.9
4,625,503 - MPMX20_04424 0.25 +1.4
4,625,503 - MPMX20_04424 0.25 +0.4
4,625,551 + MPMX20_04424 0.30 -1.2
4,625,551 + MPMX20_04424 0.30 -0.3
4,625,674 - MPMX20_04424 0.42 -0.8
4,625,769 - MPMX20_04424 0.52 +0.3
4,625,857 - MPMX20_04424 0.61 +1.5
4,625,882 + MPMX20_04424 0.63 +1.1
4,625,890 - MPMX20_04424 0.64 -1.0
4,625,890 - MPMX20_04424 0.64 +2.4
4,625,900 - MPMX20_04424 0.65 -0.8
4,625,960 + MPMX20_04424 0.71 -0.7
4,625,969 - MPMX20_04424 0.72 +1.2
4,626,058 - MPMX20_04424 0.81 -0.4
4,626,079 + MPMX20_04424 0.83 -2.6
4,626,138 + MPMX20_04424 0.89 +1.0
4,626,169 + +0.4
4,626,169 + -2.3
4,626,169 + -0.8
4,626,177 - +1.4
4,626,199 + +0.7
4,626,225 - +1.0
4,626,237 - +1.1
4,627,202 + -0.1
4,627,202 + +0.6
4,627,210 - +0.7
4,627,223 + -2.3

Or see this region's nucleotide sequence