Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04300

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04298 and MPMX20_04299 are separated by 111 nucleotidesMPMX20_04299 and MPMX20_04300 are separated by 36 nucleotidesMPMX20_04300 and MPMX20_04301 are separated by 61 nucleotidesMPMX20_04301 and MPMX20_04302 are separated by 307 nucleotides MPMX20_04298: MPMX20_04298 - hypothetical protein, at 4,484,094 to 4,484,363 _04298 MPMX20_04299: MPMX20_04299 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 4,484,475 to 4,485,248 _04299 MPMX20_04300: MPMX20_04300 - Putative ribose-phosphate pyrophosphokinase, at 4,485,285 to 4,485,968 _04300 MPMX20_04301: MPMX20_04301 - Fe/S biogenesis protein NfuA, at 4,486,030 to 4,486,605 _04301 MPMX20_04302: MPMX20_04302 - High-affinity gluconate transporter, at 4,486,913 to 4,488,229 _04302 Position (kb) 4485 4486Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4484.299 kb on - strand, within MPMX20_04298at 4484.373 kb on - strandat 4484.383 kb on - strandat 4484.430 kb on - strandat 4484.517 kb on - strandat 4484.930 kb on + strand, within MPMX20_04299at 4484.935 kb on + strand, within MPMX20_04299at 4484.943 kb on - strand, within MPMX20_04299at 4484.943 kb on - strand, within MPMX20_04299at 4484.943 kb on - strand, within MPMX20_04299at 4484.953 kb on - strand, within MPMX20_04299at 4484.962 kb on + strand, within MPMX20_04299at 4484.967 kb on + strand, within MPMX20_04299at 4484.975 kb on - strand, within MPMX20_04299at 4485.039 kb on + strand, within MPMX20_04299at 4485.047 kb on - strand, within MPMX20_04299at 4485.179 kb on + strandat 4485.218 kb on + strandat 4485.218 kb on + strandat 4485.251 kb on - strandat 4485.284 kb on + strandat 4485.286 kb on + strandat 4485.294 kb on - strandat 4485.294 kb on - strandat 4485.324 kb on + strandat 4485.365 kb on - strand, within MPMX20_04300at 4485.519 kb on - strand, within MPMX20_04300at 4485.548 kb on + strand, within MPMX20_04300at 4485.554 kb on - strand, within MPMX20_04300at 4485.650 kb on - strand, within MPMX20_04300at 4485.736 kb on - strand, within MPMX20_04300at 4485.877 kb on + strand, within MPMX20_04300at 4485.885 kb on - strand, within MPMX20_04300at 4485.948 kb on + strandat 4485.961 kb on - strandat 4486.209 kb on + strand, within MPMX20_04301at 4486.209 kb on + strand, within MPMX20_04301at 4486.209 kb on + strand, within MPMX20_04301at 4486.209 kb on + strand, within MPMX20_04301at 4486.217 kb on - strand, within MPMX20_04301at 4486.217 kb on - strand, within MPMX20_04301at 4486.230 kb on + strand, within MPMX20_04301at 4486.266 kb on - strand, within MPMX20_04301at 4486.548 kb on + strandat 4486.556 kb on - strandat 4486.556 kb on - strandat 4486.556 kb on - strandat 4486.638 kb on - strandat 4486.674 kb on + strandat 4486.687 kb on - strandat 4486.762 kb on + strandat 4486.772 kb on + strandat 4486.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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4,484,299 - MPMX20_04298 0.76 +0.8
4,484,373 - +1.9
4,484,383 - -0.9
4,484,430 - -2.3
4,484,517 - +0.9
4,484,930 + MPMX20_04299 0.59 -4.1
4,484,935 + MPMX20_04299 0.59 +1.9
4,484,943 - MPMX20_04299 0.60 -0.2
4,484,943 - MPMX20_04299 0.60 -0.3
4,484,943 - MPMX20_04299 0.60 -0.2
4,484,953 - MPMX20_04299 0.62 -0.2
4,484,962 + MPMX20_04299 0.63 +1.1
4,484,967 + MPMX20_04299 0.64 -1.2
4,484,975 - MPMX20_04299 0.65 +0.5
4,485,039 + MPMX20_04299 0.73 -1.9
4,485,047 - MPMX20_04299 0.74 -1.2
4,485,179 + +2.0
4,485,218 + -0.7
4,485,218 + +1.3
4,485,251 - +0.6
4,485,284 + +1.0
4,485,286 + +0.8
4,485,294 - -0.4
4,485,294 - -2.2
4,485,324 + +1.4
4,485,365 - MPMX20_04300 0.12 -0.4
4,485,519 - MPMX20_04300 0.34 -4.6
4,485,548 + MPMX20_04300 0.38 -1.9
4,485,554 - MPMX20_04300 0.39 -3.7
4,485,650 - MPMX20_04300 0.53 -3.3
4,485,736 - MPMX20_04300 0.66 -2.4
4,485,877 + MPMX20_04300 0.87 -2.0
4,485,885 - MPMX20_04300 0.88 +1.8
4,485,948 + -0.2
4,485,961 - +0.9
4,486,209 + MPMX20_04301 0.31 -2.5
4,486,209 + MPMX20_04301 0.31 -0.6
4,486,209 + MPMX20_04301 0.31 +0.8
4,486,209 + MPMX20_04301 0.31 -0.9
4,486,217 - MPMX20_04301 0.32 -1.7
4,486,217 - MPMX20_04301 0.32 -2.9
4,486,230 + MPMX20_04301 0.35 -2.1
4,486,266 - MPMX20_04301 0.41 +0.8
4,486,548 + -3.2
4,486,556 - -1.8
4,486,556 - +1.6
4,486,556 - -3.2
4,486,638 - +1.2
4,486,674 + -2.7
4,486,687 - +1.2
4,486,762 + -0.4
4,486,772 + -3.8
4,486,938 + +0.8

Or see this region's nucleotide sequence