Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04065 and MPMX20_04066 are separated by 142 nucleotides MPMX20_04066 and MPMX20_04067 are separated by 180 nucleotides
MPMX20_04065: MPMX20_04065 - Tryptophan-specific transport protein, at 4,261,209 to 4,262,453
_04065
MPMX20_04066: MPMX20_04066 - ATP-dependent RNA helicase DeaD, at 4,262,596 to 4,264,500
_04066
MPMX20_04067: MPMX20_04067 - Lipoprotein NlpI, at 4,264,681 to 4,265,565
_04067
Position (kb)
4262
4263
4264
4265 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 4261.604 kb on + strand, within MPMX20_04065 at 4261.620 kb on + strand, within MPMX20_04065 at 4261.628 kb on - strand, within MPMX20_04065 at 4261.632 kb on + strand, within MPMX20_04065 at 4261.633 kb on + strand, within MPMX20_04065 at 4261.668 kb on + strand, within MPMX20_04065 at 4261.676 kb on - strand, within MPMX20_04065 at 4261.722 kb on - strand, within MPMX20_04065 at 4261.773 kb on + strand, within MPMX20_04065 at 4261.781 kb on - strand, within MPMX20_04065 at 4261.781 kb on - strand, within MPMX20_04065 at 4261.781 kb on - strand, within MPMX20_04065 at 4261.843 kb on - strand, within MPMX20_04065 at 4261.857 kb on - strand, within MPMX20_04065 at 4261.906 kb on + strand, within MPMX20_04065 at 4261.906 kb on + strand, within MPMX20_04065 at 4261.914 kb on - strand, within MPMX20_04065 at 4262.004 kb on + strand, within MPMX20_04065 at 4262.017 kb on - strand, within MPMX20_04065 at 4262.063 kb on - strand, within MPMX20_04065 at 4262.122 kb on - strand, within MPMX20_04065 at 4262.198 kb on - strand, within MPMX20_04065 at 4262.210 kb on + strand, within MPMX20_04065 at 4262.218 kb on - strand, within MPMX20_04065 at 4262.271 kb on + strand, within MPMX20_04065 at 4262.358 kb on - strand at 4262.427 kb on + strand at 4262.430 kb on - strand at 4262.628 kb on - strand at 4262.798 kb on - strand, within MPMX20_04066 at 4263.011 kb on - strand, within MPMX20_04066 at 4263.305 kb on - strand, within MPMX20_04066 at 4264.629 kb on - strand at 4264.706 kb on - strand at 4264.713 kb on - strand at 4264.912 kb on - strand, within MPMX20_04067 at 4265.146 kb on - strand, within MPMX20_04067 at 4265.146 kb on - strand, within MPMX20_04067 at 4265.146 kb on - strand, within MPMX20_04067 at 4265.146 kb on - strand, within MPMX20_04067 at 4265.146 kb on - strand, within MPMX20_04067 at 4265.146 kb on - strand, within MPMX20_04067 at 4265.369 kb on + strand, within MPMX20_04067 at 4265.377 kb on - strand, within MPMX20_04067 at 4265.377 kb on - strand, within MPMX20_04067 at 4265.377 kb on - strand, within MPMX20_04067 at 4265.396 kb on + strand, within MPMX20_04067 at 4265.404 kb on - strand, within MPMX20_04067 at 4265.404 kb on - strand, within MPMX20_04067
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 4,261,604 + MPMX20_04065 0.32 -0.3 4,261,620 + MPMX20_04065 0.33 -0.2 4,261,628 - MPMX20_04065 0.34 +0.6 4,261,632 + MPMX20_04065 0.34 -3.4 4,261,633 + MPMX20_04065 0.34 +1.3 4,261,668 + MPMX20_04065 0.37 -0.8 4,261,676 - MPMX20_04065 0.38 -0.5 4,261,722 - MPMX20_04065 0.41 +1.8 4,261,773 + MPMX20_04065 0.45 -2.3 4,261,781 - MPMX20_04065 0.46 -0.6 4,261,781 - MPMX20_04065 0.46 -2.2 4,261,781 - MPMX20_04065 0.46 +0.8 4,261,843 - MPMX20_04065 0.51 -0.8 4,261,857 - MPMX20_04065 0.52 +2.1 4,261,906 + MPMX20_04065 0.56 -1.6 4,261,906 + MPMX20_04065 0.56 +0.3 4,261,914 - MPMX20_04065 0.57 -3.1 4,262,004 + MPMX20_04065 0.64 -3.3 4,262,017 - MPMX20_04065 0.65 +0.8 4,262,063 - MPMX20_04065 0.69 -0.2 4,262,122 - MPMX20_04065 0.73 +5.0 4,262,198 - MPMX20_04065 0.79 +0.8 4,262,210 + MPMX20_04065 0.80 -0.4 4,262,218 - MPMX20_04065 0.81 +1.7 4,262,271 + MPMX20_04065 0.85 -2.7 4,262,358 - -0.5 4,262,427 + +1.3 4,262,430 - +0.3 4,262,628 - -2.7 4,262,798 - MPMX20_04066 0.11 -0.3 4,263,011 - MPMX20_04066 0.22 -0.6 4,263,305 - MPMX20_04066 0.37 -1.8 4,264,629 - -1.1 4,264,706 - +0.8 4,264,713 - +1.4 4,264,912 - MPMX20_04067 0.26 +1.2 4,265,146 - MPMX20_04067 0.53 +0.8 4,265,146 - MPMX20_04067 0.53 +1.0 4,265,146 - MPMX20_04067 0.53 +0.7 4,265,146 - MPMX20_04067 0.53 +1.4 4,265,146 - MPMX20_04067 0.53 +1.4 4,265,146 - MPMX20_04067 0.53 +1.4 4,265,369 + MPMX20_04067 0.78 -4.5 4,265,377 - MPMX20_04067 0.79 -3.3 4,265,377 - MPMX20_04067 0.79 +2.2 4,265,377 - MPMX20_04067 0.79 +1.7 4,265,396 + MPMX20_04067 0.81 -0.2 4,265,404 - MPMX20_04067 0.82 -2.4 4,265,404 - MPMX20_04067 0.82 -0.8
Or see this region's nucleotide sequence