Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03254

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03252 and MPMX20_03253 are separated by 28 nucleotidesMPMX20_03253 and MPMX20_03254 overlap by 1 nucleotidesMPMX20_03254 and MPMX20_03255 are separated by 67 nucleotides MPMX20_03252: MPMX20_03252 - Protein DedA, at 3,422,090 to 3,422,749 _03252 MPMX20_03253: MPMX20_03253 - tRNA pseudouridine synthase A, at 3,422,778 to 3,423,590 _03253 MPMX20_03254: MPMX20_03254 - USG-1 protein, at 3,423,590 to 3,424,603 _03254 MPMX20_03255: MPMX20_03255 - Erythronate-4-phosphate dehydrogenase, at 3,424,671 to 3,425,807 _03255 Position (kb) 3423 3424 3425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3422.648 kb on + strand, within MPMX20_03252at 3422.664 kb on + strand, within MPMX20_03252at 3422.673 kb on - strand, within MPMX20_03252at 3422.689 kb on + strandat 3422.706 kb on + strandat 3422.716 kb on + strandat 3422.771 kb on + strandat 3422.779 kb on - strandat 3422.802 kb on + strandat 3422.827 kb on - strandat 3422.895 kb on + strand, within MPMX20_03253at 3422.895 kb on + strand, within MPMX20_03253at 3422.898 kb on - strand, within MPMX20_03253at 3422.928 kb on - strand, within MPMX20_03253at 3422.936 kb on + strand, within MPMX20_03253at 3422.973 kb on + strand, within MPMX20_03253at 3422.989 kb on - strand, within MPMX20_03253at 3422.993 kb on - strand, within MPMX20_03253at 3423.023 kb on + strand, within MPMX20_03253at 3423.051 kb on - strand, within MPMX20_03253at 3423.073 kb on + strand, within MPMX20_03253at 3423.081 kb on - strand, within MPMX20_03253at 3423.084 kb on + strand, within MPMX20_03253at 3423.092 kb on - strand, within MPMX20_03253at 3423.124 kb on + strand, within MPMX20_03253at 3423.134 kb on + strand, within MPMX20_03253at 3423.157 kb on + strand, within MPMX20_03253at 3423.192 kb on + strand, within MPMX20_03253at 3423.200 kb on - strand, within MPMX20_03253at 3423.200 kb on - strand, within MPMX20_03253at 3423.200 kb on - strand, within MPMX20_03253at 3423.230 kb on - strand, within MPMX20_03253at 3423.286 kb on + strand, within MPMX20_03253at 3423.292 kb on - strand, within MPMX20_03253at 3423.427 kb on - strand, within MPMX20_03253at 3423.452 kb on + strand, within MPMX20_03253at 3423.517 kb on + strandat 3423.588 kb on + strandat 3423.588 kb on + strandat 3423.588 kb on + strandat 3423.596 kb on - strandat 3423.715 kb on + strand, within MPMX20_03254at 3423.758 kb on - strand, within MPMX20_03254at 3423.885 kb on + strand, within MPMX20_03254at 3424.059 kb on + strand, within MPMX20_03254at 3424.359 kb on - strand, within MPMX20_03254at 3424.416 kb on - strand, within MPMX20_03254at 3424.438 kb on - strand, within MPMX20_03254at 3424.502 kb on + strandat 3424.510 kb on - strandat 3424.512 kb on + strandat 3424.541 kb on + strandat 3424.544 kb on - strandat 3424.546 kb on + strandat 3424.546 kb on + strandat 3424.546 kb on + strandat 3424.547 kb on + strandat 3424.554 kb on - strandat 3424.653 kb on - strandat 3424.900 kb on - strand, within MPMX20_03255at 3424.901 kb on - strand, within MPMX20_03255at 3424.910 kb on + strand, within MPMX20_03255at 3424.910 kb on + strand, within MPMX20_03255at 3425.038 kb on - strand, within MPMX20_03255at 3425.038 kb on - strand, within MPMX20_03255at 3425.067 kb on - strand, within MPMX20_03255at 3425.076 kb on - strand, within MPMX20_03255at 3425.076 kb on - strand, within MPMX20_03255at 3425.083 kb on + strand, within MPMX20_03255at 3425.086 kb on - strand, within MPMX20_03255at 3425.090 kb on + strand, within MPMX20_03255at 3425.091 kb on - strand, within MPMX20_03255at 3425.159 kb on + strand, within MPMX20_03255at 3425.212 kb on + strand, within MPMX20_03255at 3425.226 kb on + strand, within MPMX20_03255at 3425.277 kb on - strand, within MPMX20_03255at 3425.318 kb on + strand, within MPMX20_03255at 3425.379 kb on - strand, within MPMX20_03255at 3425.391 kb on + strand, within MPMX20_03255at 3425.391 kb on + strand, within MPMX20_03255at 3425.463 kb on - strand, within MPMX20_03255at 3425.484 kb on - strand, within MPMX20_03255at 3425.494 kb on - strand, within MPMX20_03255at 3425.501 kb on - strand, within MPMX20_03255at 3425.563 kb on + strand, within MPMX20_03255

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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3,422,648 + MPMX20_03252 0.85 +1.8
3,422,664 + MPMX20_03252 0.87 +0.3
3,422,673 - MPMX20_03252 0.88 -1.5
3,422,689 + -1.1
3,422,706 + +1.0
3,422,716 + -0.5
3,422,771 + -2.7
3,422,779 - +2.4
3,422,802 + +0.5
3,422,827 - -3.0
3,422,895 + MPMX20_03253 0.14 +1.2
3,422,895 + MPMX20_03253 0.14 +0.3
3,422,898 - MPMX20_03253 0.15 -1.2
3,422,928 - MPMX20_03253 0.18 -0.8
3,422,936 + MPMX20_03253 0.19 -2.0
3,422,973 + MPMX20_03253 0.24 +1.8
3,422,989 - MPMX20_03253 0.26 +1.7
3,422,993 - MPMX20_03253 0.26 +0.3
3,423,023 + MPMX20_03253 0.30 -3.5
3,423,051 - MPMX20_03253 0.34 -1.8
3,423,073 + MPMX20_03253 0.36 +0.1
3,423,081 - MPMX20_03253 0.37 -1.6
3,423,084 + MPMX20_03253 0.38 +0.7
3,423,092 - MPMX20_03253 0.39 +0.7
3,423,124 + MPMX20_03253 0.43 +1.0
3,423,134 + MPMX20_03253 0.44 -0.3
3,423,157 + MPMX20_03253 0.47 +0.5
3,423,192 + MPMX20_03253 0.51 +0.2
3,423,200 - MPMX20_03253 0.52 -2.5
3,423,200 - MPMX20_03253 0.52 +0.8
3,423,200 - MPMX20_03253 0.52 -2.1
3,423,230 - MPMX20_03253 0.56 -0.0
3,423,286 + MPMX20_03253 0.62 +1.8
3,423,292 - MPMX20_03253 0.63 +0.9
3,423,427 - MPMX20_03253 0.80 +2.1
3,423,452 + MPMX20_03253 0.83 -0.1
3,423,517 + -3.6
3,423,588 + +0.5
3,423,588 + -0.4
3,423,588 + -1.8
3,423,596 - -0.6
3,423,715 + MPMX20_03254 0.12 +0.2
3,423,758 - MPMX20_03254 0.17 -0.7
3,423,885 + MPMX20_03254 0.29 +0.8
3,424,059 + MPMX20_03254 0.46 -1.0
3,424,359 - MPMX20_03254 0.76 -1.5
3,424,416 - MPMX20_03254 0.81 -3.1
3,424,438 - MPMX20_03254 0.84 -2.0
3,424,502 + -0.5
3,424,510 - +1.8
3,424,512 + -0.8
3,424,541 + -1.2
3,424,544 - -1.6
3,424,546 + +1.3
3,424,546 + -0.2
3,424,546 + -2.7
3,424,547 + +1.2
3,424,554 - +0.8
3,424,653 - -1.5
3,424,900 - MPMX20_03255 0.20 +2.1
3,424,901 - MPMX20_03255 0.20 -3.5
3,424,910 + MPMX20_03255 0.21 +0.4
3,424,910 + MPMX20_03255 0.21 +3.2
3,425,038 - MPMX20_03255 0.32 +0.7
3,425,038 - MPMX20_03255 0.32 +1.2
3,425,067 - MPMX20_03255 0.35 +1.5
3,425,076 - MPMX20_03255 0.36 -3.1
3,425,076 - MPMX20_03255 0.36 -1.9
3,425,083 + MPMX20_03255 0.36 -0.2
3,425,086 - MPMX20_03255 0.36 -0.5
3,425,090 + MPMX20_03255 0.37 +1.3
3,425,091 - MPMX20_03255 0.37 +0.8
3,425,159 + MPMX20_03255 0.43 +1.1
3,425,212 + MPMX20_03255 0.48 -1.2
3,425,226 + MPMX20_03255 0.49 -0.5
3,425,277 - MPMX20_03255 0.53 +1.2
3,425,318 + MPMX20_03255 0.57 +1.4
3,425,379 - MPMX20_03255 0.62 -2.6
3,425,391 + MPMX20_03255 0.63 -0.8
3,425,391 + MPMX20_03255 0.63 +4.1
3,425,463 - MPMX20_03255 0.70 +0.2
3,425,484 - MPMX20_03255 0.72 -0.1
3,425,494 - MPMX20_03255 0.72 +1.2
3,425,501 - MPMX20_03255 0.73 -0.2
3,425,563 + MPMX20_03255 0.78 -0.6

Or see this region's nucleotide sequence