Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03252 and MPMX20_03253 are separated by 28 nucleotides MPMX20_03253 and MPMX20_03254 overlap by 1 nucleotides MPMX20_03254 and MPMX20_03255 are separated by 67 nucleotides
MPMX20_03252: MPMX20_03252 - Protein DedA, at 3,422,090 to 3,422,749
_03252
MPMX20_03253: MPMX20_03253 - tRNA pseudouridine synthase A, at 3,422,778 to 3,423,590
_03253
MPMX20_03254: MPMX20_03254 - USG-1 protein, at 3,423,590 to 3,424,603
_03254
MPMX20_03255: MPMX20_03255 - Erythronate-4-phosphate dehydrogenase, at 3,424,671 to 3,425,807
_03255
Position (kb)
3423
3424
3425 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3422.648 kb on + strand, within MPMX20_03252 at 3422.664 kb on + strand, within MPMX20_03252 at 3422.673 kb on - strand, within MPMX20_03252 at 3422.689 kb on + strand at 3422.706 kb on + strand at 3422.716 kb on + strand at 3422.771 kb on + strand at 3422.779 kb on - strand at 3422.802 kb on + strand at 3422.827 kb on - strand at 3422.895 kb on + strand, within MPMX20_03253 at 3422.895 kb on + strand, within MPMX20_03253 at 3422.898 kb on - strand, within MPMX20_03253 at 3422.928 kb on - strand, within MPMX20_03253 at 3422.936 kb on + strand, within MPMX20_03253 at 3422.973 kb on + strand, within MPMX20_03253 at 3422.989 kb on - strand, within MPMX20_03253 at 3422.993 kb on - strand, within MPMX20_03253 at 3423.023 kb on + strand, within MPMX20_03253 at 3423.051 kb on - strand, within MPMX20_03253 at 3423.073 kb on + strand, within MPMX20_03253 at 3423.081 kb on - strand, within MPMX20_03253 at 3423.084 kb on + strand, within MPMX20_03253 at 3423.092 kb on - strand, within MPMX20_03253 at 3423.124 kb on + strand, within MPMX20_03253 at 3423.134 kb on + strand, within MPMX20_03253 at 3423.157 kb on + strand, within MPMX20_03253 at 3423.192 kb on + strand, within MPMX20_03253 at 3423.200 kb on - strand, within MPMX20_03253 at 3423.200 kb on - strand, within MPMX20_03253 at 3423.200 kb on - strand, within MPMX20_03253 at 3423.230 kb on - strand, within MPMX20_03253 at 3423.286 kb on + strand, within MPMX20_03253 at 3423.292 kb on - strand, within MPMX20_03253 at 3423.427 kb on - strand, within MPMX20_03253 at 3423.452 kb on + strand, within MPMX20_03253 at 3423.517 kb on + strand at 3423.588 kb on + strand at 3423.588 kb on + strand at 3423.588 kb on + strand at 3423.596 kb on - strand at 3423.715 kb on + strand, within MPMX20_03254 at 3423.758 kb on - strand, within MPMX20_03254 at 3423.885 kb on + strand, within MPMX20_03254 at 3424.059 kb on + strand, within MPMX20_03254 at 3424.359 kb on - strand, within MPMX20_03254 at 3424.416 kb on - strand, within MPMX20_03254 at 3424.438 kb on - strand, within MPMX20_03254 at 3424.502 kb on + strand at 3424.510 kb on - strand at 3424.512 kb on + strand at 3424.541 kb on + strand at 3424.544 kb on - strand at 3424.546 kb on + strand at 3424.546 kb on + strand at 3424.546 kb on + strand at 3424.547 kb on + strand at 3424.554 kb on - strand at 3424.653 kb on - strand at 3424.900 kb on - strand, within MPMX20_03255 at 3424.901 kb on - strand, within MPMX20_03255 at 3424.910 kb on + strand, within MPMX20_03255 at 3424.910 kb on + strand, within MPMX20_03255 at 3425.038 kb on - strand, within MPMX20_03255 at 3425.038 kb on - strand, within MPMX20_03255 at 3425.067 kb on - strand, within MPMX20_03255 at 3425.076 kb on - strand, within MPMX20_03255 at 3425.076 kb on - strand, within MPMX20_03255 at 3425.083 kb on + strand, within MPMX20_03255 at 3425.086 kb on - strand, within MPMX20_03255 at 3425.090 kb on + strand, within MPMX20_03255 at 3425.091 kb on - strand, within MPMX20_03255 at 3425.159 kb on + strand, within MPMX20_03255 at 3425.212 kb on + strand, within MPMX20_03255 at 3425.226 kb on + strand, within MPMX20_03255 at 3425.277 kb on - strand, within MPMX20_03255 at 3425.318 kb on + strand, within MPMX20_03255 at 3425.379 kb on - strand, within MPMX20_03255 at 3425.391 kb on + strand, within MPMX20_03255 at 3425.391 kb on + strand, within MPMX20_03255 at 3425.463 kb on - strand, within MPMX20_03255 at 3425.484 kb on - strand, within MPMX20_03255 at 3425.494 kb on - strand, within MPMX20_03255 at 3425.501 kb on - strand, within MPMX20_03255 at 3425.563 kb on + strand, within MPMX20_03255
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 3,422,648 + MPMX20_03252 0.85 +1.8 3,422,664 + MPMX20_03252 0.87 +0.3 3,422,673 - MPMX20_03252 0.88 -1.5 3,422,689 + -1.1 3,422,706 + +1.0 3,422,716 + -0.5 3,422,771 + -2.7 3,422,779 - +2.4 3,422,802 + +0.5 3,422,827 - -3.0 3,422,895 + MPMX20_03253 0.14 +1.2 3,422,895 + MPMX20_03253 0.14 +0.3 3,422,898 - MPMX20_03253 0.15 -1.2 3,422,928 - MPMX20_03253 0.18 -0.8 3,422,936 + MPMX20_03253 0.19 -2.0 3,422,973 + MPMX20_03253 0.24 +1.8 3,422,989 - MPMX20_03253 0.26 +1.7 3,422,993 - MPMX20_03253 0.26 +0.3 3,423,023 + MPMX20_03253 0.30 -3.5 3,423,051 - MPMX20_03253 0.34 -1.8 3,423,073 + MPMX20_03253 0.36 +0.1 3,423,081 - MPMX20_03253 0.37 -1.6 3,423,084 + MPMX20_03253 0.38 +0.7 3,423,092 - MPMX20_03253 0.39 +0.7 3,423,124 + MPMX20_03253 0.43 +1.0 3,423,134 + MPMX20_03253 0.44 -0.3 3,423,157 + MPMX20_03253 0.47 +0.5 3,423,192 + MPMX20_03253 0.51 +0.2 3,423,200 - MPMX20_03253 0.52 -2.5 3,423,200 - MPMX20_03253 0.52 +0.8 3,423,200 - MPMX20_03253 0.52 -2.1 3,423,230 - MPMX20_03253 0.56 -0.0 3,423,286 + MPMX20_03253 0.62 +1.8 3,423,292 - MPMX20_03253 0.63 +0.9 3,423,427 - MPMX20_03253 0.80 +2.1 3,423,452 + MPMX20_03253 0.83 -0.1 3,423,517 + -3.6 3,423,588 + +0.5 3,423,588 + -0.4 3,423,588 + -1.8 3,423,596 - -0.6 3,423,715 + MPMX20_03254 0.12 +0.2 3,423,758 - MPMX20_03254 0.17 -0.7 3,423,885 + MPMX20_03254 0.29 +0.8 3,424,059 + MPMX20_03254 0.46 -1.0 3,424,359 - MPMX20_03254 0.76 -1.5 3,424,416 - MPMX20_03254 0.81 -3.1 3,424,438 - MPMX20_03254 0.84 -2.0 3,424,502 + -0.5 3,424,510 - +1.8 3,424,512 + -0.8 3,424,541 + -1.2 3,424,544 - -1.6 3,424,546 + +1.3 3,424,546 + -0.2 3,424,546 + -2.7 3,424,547 + +1.2 3,424,554 - +0.8 3,424,653 - -1.5 3,424,900 - MPMX20_03255 0.20 +2.1 3,424,901 - MPMX20_03255 0.20 -3.5 3,424,910 + MPMX20_03255 0.21 +0.4 3,424,910 + MPMX20_03255 0.21 +3.2 3,425,038 - MPMX20_03255 0.32 +0.7 3,425,038 - MPMX20_03255 0.32 +1.2 3,425,067 - MPMX20_03255 0.35 +1.5 3,425,076 - MPMX20_03255 0.36 -3.1 3,425,076 - MPMX20_03255 0.36 -1.9 3,425,083 + MPMX20_03255 0.36 -0.2 3,425,086 - MPMX20_03255 0.36 -0.5 3,425,090 + MPMX20_03255 0.37 +1.3 3,425,091 - MPMX20_03255 0.37 +0.8 3,425,159 + MPMX20_03255 0.43 +1.1 3,425,212 + MPMX20_03255 0.48 -1.2 3,425,226 + MPMX20_03255 0.49 -0.5 3,425,277 - MPMX20_03255 0.53 +1.2 3,425,318 + MPMX20_03255 0.57 +1.4 3,425,379 - MPMX20_03255 0.62 -2.6 3,425,391 + MPMX20_03255 0.63 -0.8 3,425,391 + MPMX20_03255 0.63 +4.1 3,425,463 - MPMX20_03255 0.70 +0.2 3,425,484 - MPMX20_03255 0.72 -0.1 3,425,494 - MPMX20_03255 0.72 +1.2 3,425,501 - MPMX20_03255 0.73 -0.2 3,425,563 + MPMX20_03255 0.78 -0.6
Or see this region's nucleotide sequence