Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02063

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02062 and MPMX20_02063 are separated by 94 nucleotidesMPMX20_02063 and MPMX20_02064 are separated by 130 nucleotidesMPMX20_02064 and MPMX20_02065 overlap by 66 nucleotides MPMX20_02062: MPMX20_02062 - Hca operon transcriptional activator HcaR, at 2,155,902 to 2,156,834 _02062 MPMX20_02063: MPMX20_02063 - Protein mlc, at 2,156,929 to 2,158,149 _02063 MPMX20_02064: MPMX20_02064 - ATP-dependent dethiobiotin synthetase BioD 1, at 2,158,280 to 2,158,975 _02064 MPMX20_02065: MPMX20_02065 - Voltage-gated ClC-type chloride channel ClcB, at 2,158,910 to 2,160,220 _02065 Position (kb) 2156 2157 2158 2159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2155.950 kb on - strandat 2156.012 kb on + strand, within MPMX20_02062at 2156.021 kb on - strand, within MPMX20_02062at 2156.041 kb on - strand, within MPMX20_02062at 2156.041 kb on - strand, within MPMX20_02062at 2156.057 kb on + strand, within MPMX20_02062at 2156.068 kb on + strand, within MPMX20_02062at 2156.203 kb on + strand, within MPMX20_02062at 2156.203 kb on + strand, within MPMX20_02062at 2156.203 kb on + strand, within MPMX20_02062at 2156.318 kb on + strand, within MPMX20_02062at 2156.340 kb on + strand, within MPMX20_02062at 2156.396 kb on - strand, within MPMX20_02062at 2156.400 kb on + strand, within MPMX20_02062at 2156.501 kb on + strand, within MPMX20_02062at 2156.501 kb on + strand, within MPMX20_02062at 2156.506 kb on + strand, within MPMX20_02062at 2156.506 kb on + strand, within MPMX20_02062at 2156.506 kb on + strand, within MPMX20_02062at 2156.509 kb on - strand, within MPMX20_02062at 2156.509 kb on - strand, within MPMX20_02062at 2156.514 kb on - strand, within MPMX20_02062at 2156.551 kb on + strand, within MPMX20_02062at 2156.553 kb on - strand, within MPMX20_02062at 2156.559 kb on - strand, within MPMX20_02062at 2156.596 kb on + strand, within MPMX20_02062at 2156.604 kb on - strand, within MPMX20_02062at 2156.606 kb on + strand, within MPMX20_02062at 2156.637 kb on - strand, within MPMX20_02062at 2156.728 kb on - strand, within MPMX20_02062at 2156.734 kb on + strand, within MPMX20_02062at 2156.734 kb on + strand, within MPMX20_02062at 2156.744 kb on + strandat 2156.744 kb on + strandat 2156.757 kb on - strandat 2156.762 kb on + strandat 2156.762 kb on - strandat 2156.770 kb on - strandat 2156.770 kb on - strandat 2156.770 kb on - strandat 2156.770 kb on - strandat 2156.774 kb on + strandat 2156.775 kb on + strandat 2156.785 kb on + strandat 2156.890 kb on - strandat 2156.971 kb on - strandat 2156.973 kb on + strandat 2156.981 kb on - strandat 2157.017 kb on - strandat 2157.052 kb on - strand, within MPMX20_02063at 2157.098 kb on - strand, within MPMX20_02063at 2157.166 kb on - strand, within MPMX20_02063at 2157.190 kb on - strand, within MPMX20_02063at 2157.196 kb on - strand, within MPMX20_02063at 2157.196 kb on - strand, within MPMX20_02063at 2157.221 kb on + strand, within MPMX20_02063at 2157.221 kb on + strand, within MPMX20_02063at 2157.229 kb on - strand, within MPMX20_02063at 2157.243 kb on - strand, within MPMX20_02063at 2157.279 kb on + strand, within MPMX20_02063at 2157.305 kb on + strand, within MPMX20_02063at 2157.353 kb on + strand, within MPMX20_02063at 2157.423 kb on - strand, within MPMX20_02063at 2157.443 kb on + strand, within MPMX20_02063at 2157.451 kb on - strand, within MPMX20_02063at 2157.462 kb on + strand, within MPMX20_02063at 2157.543 kb on + strand, within MPMX20_02063at 2157.590 kb on + strand, within MPMX20_02063at 2157.637 kb on + strand, within MPMX20_02063at 2157.652 kb on - strand, within MPMX20_02063at 2157.717 kb on - strand, within MPMX20_02063at 2157.749 kb on + strand, within MPMX20_02063at 2157.765 kb on + strand, within MPMX20_02063at 2157.765 kb on + strand, within MPMX20_02063at 2157.765 kb on + strand, within MPMX20_02063at 2157.765 kb on + strand, within MPMX20_02063at 2157.770 kb on + strand, within MPMX20_02063at 2157.773 kb on - strand, within MPMX20_02063at 2157.773 kb on - strand, within MPMX20_02063at 2157.773 kb on - strand, within MPMX20_02063at 2157.773 kb on - strand, within MPMX20_02063at 2157.773 kb on - strand, within MPMX20_02063at 2157.773 kb on - strand, within MPMX20_02063at 2157.782 kb on - strand, within MPMX20_02063at 2157.807 kb on + strand, within MPMX20_02063at 2157.815 kb on - strand, within MPMX20_02063at 2157.828 kb on - strand, within MPMX20_02063at 2157.853 kb on - strand, within MPMX20_02063at 2157.955 kb on + strand, within MPMX20_02063at 2157.963 kb on - strand, within MPMX20_02063at 2157.963 kb on - strand, within MPMX20_02063at 2157.991 kb on + strand, within MPMX20_02063at 2158.085 kb on + strandat 2158.090 kb on + strandat 2158.090 kb on + strandat 2158.093 kb on - strandat 2158.093 kb on - strandat 2158.098 kb on - strandat 2158.098 kb on - strandat 2158.098 kb on - strandat 2158.098 kb on - strandat 2158.098 kb on - strandat 2158.098 kb on - strandat 2158.098 kb on - strandat 2158.123 kb on + strandat 2158.137 kb on + strandat 2158.143 kb on + strandat 2158.151 kb on - strandat 2158.182 kb on + strandat 2158.182 kb on + strandat 2158.182 kb on + strandat 2158.187 kb on + strandat 2158.190 kb on - strandat 2158.190 kb on - strandat 2158.190 kb on - strandat 2158.190 kb on - strandat 2158.190 kb on - strandat 2158.192 kb on + strandat 2158.204 kb on + strandat 2158.215 kb on - strandat 2158.331 kb on + strandat 2158.339 kb on - strandat 2158.339 kb on - strandat 2158.354 kb on + strand, within MPMX20_02064at 2158.387 kb on + strand, within MPMX20_02064at 2158.395 kb on - strand, within MPMX20_02064at 2158.517 kb on + strand, within MPMX20_02064at 2158.525 kb on - strand, within MPMX20_02064at 2158.525 kb on - strand, within MPMX20_02064at 2158.535 kb on - strand, within MPMX20_02064at 2158.559 kb on - strand, within MPMX20_02064at 2158.609 kb on + strand, within MPMX20_02064at 2158.668 kb on + strand, within MPMX20_02064at 2158.695 kb on + strand, within MPMX20_02064at 2158.797 kb on + strand, within MPMX20_02064at 2158.811 kb on - strand, within MPMX20_02064at 2158.821 kb on + strand, within MPMX20_02064at 2158.879 kb on + strand, within MPMX20_02064at 2158.893 kb on + strand, within MPMX20_02064at 2158.901 kb on - strand, within MPMX20_02064at 2158.901 kb on - strand, within MPMX20_02064at 2158.911 kb on - strandat 2158.921 kb on - strandat 2159.067 kb on + strand, within MPMX20_02065at 2159.067 kb on + strand, within MPMX20_02065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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2,155,950 - -2.8
2,156,012 + MPMX20_02062 0.12 +0.2
2,156,021 - MPMX20_02062 0.13 -0.3
2,156,041 - MPMX20_02062 0.15 +1.3
2,156,041 - MPMX20_02062 0.15 +1.5
2,156,057 + MPMX20_02062 0.17 +1.1
2,156,068 + MPMX20_02062 0.18 +1.5
2,156,203 + MPMX20_02062 0.32 -0.2
2,156,203 + MPMX20_02062 0.32 +2.6
2,156,203 + MPMX20_02062 0.32 +1.8
2,156,318 + MPMX20_02062 0.45 +0.5
2,156,340 + MPMX20_02062 0.47 -1.8
2,156,396 - MPMX20_02062 0.53 +0.5
2,156,400 + MPMX20_02062 0.53 +1.9
2,156,501 + MPMX20_02062 0.64 +1.0
2,156,501 + MPMX20_02062 0.64 +1.6
2,156,506 + MPMX20_02062 0.65 +0.9
2,156,506 + MPMX20_02062 0.65 +3.1
2,156,506 + MPMX20_02062 0.65 +1.0
2,156,509 - MPMX20_02062 0.65 -2.5
2,156,509 - MPMX20_02062 0.65 +0.6
2,156,514 - MPMX20_02062 0.66 -3.5
2,156,551 + MPMX20_02062 0.70 +1.1
2,156,553 - MPMX20_02062 0.70 -1.9
2,156,559 - MPMX20_02062 0.70 +0.4
2,156,596 + MPMX20_02062 0.74 -0.3
2,156,604 - MPMX20_02062 0.75 +2.1
2,156,606 + MPMX20_02062 0.75 +1.4
2,156,637 - MPMX20_02062 0.79 -1.8
2,156,728 - MPMX20_02062 0.89 +1.8
2,156,734 + MPMX20_02062 0.89 -2.2
2,156,734 + MPMX20_02062 0.89 +1.3
2,156,744 + -3.0
2,156,744 + -0.9
2,156,757 - -0.5
2,156,762 + -1.2
2,156,762 - -1.2
2,156,770 - -3.8
2,156,770 - -3.2
2,156,770 - -0.7
2,156,770 - -1.4
2,156,774 + +2.1
2,156,775 + +1.7
2,156,785 + +1.0
2,156,890 - -1.4
2,156,971 - -2.3
2,156,973 + -3.0
2,156,981 - +1.7
2,157,017 - -3.4
2,157,052 - MPMX20_02063 0.10 -2.3
2,157,098 - MPMX20_02063 0.14 -3.4
2,157,166 - MPMX20_02063 0.19 -4.2
2,157,190 - MPMX20_02063 0.21 -3.4
2,157,196 - MPMX20_02063 0.22 -3.3
2,157,196 - MPMX20_02063 0.22 -2.1
2,157,221 + MPMX20_02063 0.24 -2.7
2,157,221 + MPMX20_02063 0.24 -3.7
2,157,229 - MPMX20_02063 0.25 -0.6
2,157,243 - MPMX20_02063 0.26 -1.0
2,157,279 + MPMX20_02063 0.29 -0.4
2,157,305 + MPMX20_02063 0.31 -0.6
2,157,353 + MPMX20_02063 0.35 -0.7
2,157,423 - MPMX20_02063 0.40 -0.2
2,157,443 + MPMX20_02063 0.42 -3.9
2,157,451 - MPMX20_02063 0.43 -0.8
2,157,462 + MPMX20_02063 0.44 +0.8
2,157,543 + MPMX20_02063 0.50 +2.0
2,157,590 + MPMX20_02063 0.54 -2.3
2,157,637 + MPMX20_02063 0.58 -0.7
2,157,652 - MPMX20_02063 0.59 -3.2
2,157,717 - MPMX20_02063 0.65 -3.2
2,157,749 + MPMX20_02063 0.67 -2.8
2,157,765 + MPMX20_02063 0.68 -0.6
2,157,765 + MPMX20_02063 0.68 -3.2
2,157,765 + MPMX20_02063 0.68 +0.4
2,157,765 + MPMX20_02063 0.68 -2.4
2,157,770 + MPMX20_02063 0.69 +1.0
2,157,773 - MPMX20_02063 0.69 -0.7
2,157,773 - MPMX20_02063 0.69 -0.4
2,157,773 - MPMX20_02063 0.69 -4.1
2,157,773 - MPMX20_02063 0.69 -1.9
2,157,773 - MPMX20_02063 0.69 -3.6
2,157,773 - MPMX20_02063 0.69 -1.6
2,157,782 - MPMX20_02063 0.70 -2.2
2,157,807 + MPMX20_02063 0.72 -4.3
2,157,815 - MPMX20_02063 0.73 -4.0
2,157,828 - MPMX20_02063 0.74 -0.9
2,157,853 - MPMX20_02063 0.76 -0.6
2,157,955 + MPMX20_02063 0.84 -0.4
2,157,963 - MPMX20_02063 0.85 -0.3
2,157,963 - MPMX20_02063 0.85 -2.3
2,157,991 + MPMX20_02063 0.87 -0.3
2,158,085 + -4.7
2,158,090 + -1.8
2,158,090 + -3.2
2,158,093 - -1.9
2,158,093 - +2.2
2,158,098 - +1.5
2,158,098 - -3.2
2,158,098 - -3.2
2,158,098 - -4.0
2,158,098 - +0.7
2,158,098 - -0.2
2,158,098 - -3.1
2,158,123 + -0.2
2,158,137 + +0.4
2,158,143 + +0.8
2,158,151 - -3.2
2,158,182 + -0.6
2,158,182 + +0.6
2,158,182 + +1.0
2,158,187 + -2.3
2,158,190 - +0.7
2,158,190 - -0.2
2,158,190 - -0.5
2,158,190 - +0.9
2,158,190 - -0.2
2,158,192 + -2.8
2,158,204 + +2.3
2,158,215 - -2.1
2,158,331 + -0.3
2,158,339 - +1.9
2,158,339 - +1.8
2,158,354 + MPMX20_02064 0.11 +0.1
2,158,387 + MPMX20_02064 0.15 +0.1
2,158,395 - MPMX20_02064 0.17 -0.1
2,158,517 + MPMX20_02064 0.34 -0.2
2,158,525 - MPMX20_02064 0.35 -0.7
2,158,525 - MPMX20_02064 0.35 +3.0
2,158,535 - MPMX20_02064 0.37 +0.7
2,158,559 - MPMX20_02064 0.40 +0.1
2,158,609 + MPMX20_02064 0.47 +1.3
2,158,668 + MPMX20_02064 0.56 -1.2
2,158,695 + MPMX20_02064 0.60 +1.3
2,158,797 + MPMX20_02064 0.74 -1.8
2,158,811 - MPMX20_02064 0.76 +1.0
2,158,821 + MPMX20_02064 0.78 +0.2
2,158,879 + MPMX20_02064 0.86 +0.4
2,158,893 + MPMX20_02064 0.88 +1.5
2,158,901 - MPMX20_02064 0.89 +1.9
2,158,901 - MPMX20_02064 0.89 -1.4
2,158,911 - +1.1
2,158,921 - -0.6
2,159,067 + MPMX20_02065 0.12 -0.2
2,159,067 + MPMX20_02065 0.12 +0.9

Or see this region's nucleotide sequence