Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01567

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01566 and MPMX20_01567 are separated by 69 nucleotidesMPMX20_01567 and MPMX20_01568 are separated by 253 nucleotides MPMX20_01566: MPMX20_01566 - Phosphoserine aminotransferase, at 1,646,393 to 1,647,481 _01566 MPMX20_01567: MPMX20_01567 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,647,551 to 1,648,834 _01567 MPMX20_01568: MPMX20_01568 - Cytidylate kinase, at 1,649,088 to 1,649,771 _01568 Position (kb) 1647 1648 1649Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1646.570 kb on + strand, within MPMX20_01566at 1646.572 kb on + strand, within MPMX20_01566at 1646.578 kb on - strand, within MPMX20_01566at 1646.578 kb on - strand, within MPMX20_01566at 1646.597 kb on + strand, within MPMX20_01566at 1646.605 kb on - strand, within MPMX20_01566at 1646.678 kb on - strand, within MPMX20_01566at 1646.687 kb on - strand, within MPMX20_01566at 1646.766 kb on + strand, within MPMX20_01566at 1646.784 kb on - strand, within MPMX20_01566at 1646.796 kb on - strand, within MPMX20_01566at 1646.799 kb on + strand, within MPMX20_01566at 1646.876 kb on + strand, within MPMX20_01566at 1646.960 kb on + strand, within MPMX20_01566at 1646.976 kb on - strand, within MPMX20_01566at 1647.037 kb on + strand, within MPMX20_01566at 1647.037 kb on + strand, within MPMX20_01566at 1647.037 kb on - strand, within MPMX20_01566at 1647.045 kb on - strand, within MPMX20_01566at 1647.051 kb on + strand, within MPMX20_01566at 1647.065 kb on + strand, within MPMX20_01566at 1647.070 kb on + strand, within MPMX20_01566at 1647.080 kb on + strand, within MPMX20_01566at 1647.130 kb on + strand, within MPMX20_01566at 1647.134 kb on - strand, within MPMX20_01566at 1647.143 kb on - strand, within MPMX20_01566at 1647.143 kb on - strand, within MPMX20_01566at 1647.143 kb on - strand, within MPMX20_01566at 1647.148 kb on - strand, within MPMX20_01566at 1647.148 kb on - strand, within MPMX20_01566at 1647.225 kb on - strand, within MPMX20_01566at 1647.303 kb on - strand, within MPMX20_01566at 1647.327 kb on - strand, within MPMX20_01566at 1647.327 kb on - strand, within MPMX20_01566at 1647.388 kb on - strandat 1647.438 kb on - strandat 1647.489 kb on + strandat 1647.500 kb on + strandat 1647.500 kb on + strandat 1647.500 kb on + strandat 1647.557 kb on + strandat 1647.594 kb on + strandat 1647.655 kb on - strandat 1647.666 kb on - strandat 1647.690 kb on + strand, within MPMX20_01567at 1647.690 kb on + strand, within MPMX20_01567at 1647.690 kb on + strand, within MPMX20_01567at 1647.698 kb on - strand, within MPMX20_01567at 1647.734 kb on - strand, within MPMX20_01567at 1647.773 kb on - strand, within MPMX20_01567at 1647.773 kb on - strand, within MPMX20_01567at 1647.945 kb on + strand, within MPMX20_01567at 1648.061 kb on - strand, within MPMX20_01567at 1648.078 kb on + strand, within MPMX20_01567at 1648.078 kb on + strand, within MPMX20_01567at 1648.078 kb on + strand, within MPMX20_01567at 1648.086 kb on - strand, within MPMX20_01567at 1648.086 kb on - strand, within MPMX20_01567at 1648.086 kb on - strand, within MPMX20_01567at 1648.086 kb on - strand, within MPMX20_01567at 1648.108 kb on - strand, within MPMX20_01567at 1648.144 kb on + strand, within MPMX20_01567at 1648.180 kb on - strand, within MPMX20_01567at 1648.185 kb on + strand, within MPMX20_01567at 1648.240 kb on - strand, within MPMX20_01567at 1648.253 kb on + strand, within MPMX20_01567at 1648.349 kb on - strand, within MPMX20_01567at 1648.604 kb on - strand, within MPMX20_01567at 1648.606 kb on + strand, within MPMX20_01567at 1648.640 kb on + strand, within MPMX20_01567at 1648.667 kb on + strand, within MPMX20_01567at 1648.785 kb on + strandat 1648.824 kb on - strandat 1648.856 kb on + strandat 1648.904 kb on - strandat 1648.920 kb on - strandat 1648.935 kb on - strandat 1648.946 kb on + strandat 1648.946 kb on + strandat 1648.946 kb on - strandat 1648.954 kb on - strandat 1649.011 kb on + strandat 1649.011 kb on + strandat 1649.049 kb on + strandat 1649.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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1,646,570 + MPMX20_01566 0.16 -1.6
1,646,572 + MPMX20_01566 0.16 +0.1
1,646,578 - MPMX20_01566 0.17 +0.3
1,646,578 - MPMX20_01566 0.17 -0.7
1,646,597 + MPMX20_01566 0.19 -0.5
1,646,605 - MPMX20_01566 0.19 -0.8
1,646,678 - MPMX20_01566 0.26 -0.2
1,646,687 - MPMX20_01566 0.27 -1.3
1,646,766 + MPMX20_01566 0.34 +0.7
1,646,784 - MPMX20_01566 0.36 +1.5
1,646,796 - MPMX20_01566 0.37 -3.7
1,646,799 + MPMX20_01566 0.37 -1.1
1,646,876 + MPMX20_01566 0.44 -0.9
1,646,960 + MPMX20_01566 0.52 -2.9
1,646,976 - MPMX20_01566 0.54 -0.3
1,647,037 + MPMX20_01566 0.59 -0.8
1,647,037 + MPMX20_01566 0.59 -3.8
1,647,037 - MPMX20_01566 0.59 -0.3
1,647,045 - MPMX20_01566 0.60 -3.2
1,647,051 + MPMX20_01566 0.60 -1.7
1,647,065 + MPMX20_01566 0.62 -0.1
1,647,070 + MPMX20_01566 0.62 -4.9
1,647,080 + MPMX20_01566 0.63 -5.6
1,647,130 + MPMX20_01566 0.68 -2.6
1,647,134 - MPMX20_01566 0.68 +0.5
1,647,143 - MPMX20_01566 0.69 -2.9
1,647,143 - MPMX20_01566 0.69 -2.5
1,647,143 - MPMX20_01566 0.69 -2.4
1,647,148 - MPMX20_01566 0.69 +1.2
1,647,148 - MPMX20_01566 0.69 -1.8
1,647,225 - MPMX20_01566 0.76 -2.3
1,647,303 - MPMX20_01566 0.84 -5.2
1,647,327 - MPMX20_01566 0.86 -0.0
1,647,327 - MPMX20_01566 0.86 -3.2
1,647,388 - -3.6
1,647,438 - -0.7
1,647,489 + +0.8
1,647,500 + -0.0
1,647,500 + +2.3
1,647,500 + +0.2
1,647,557 + -3.7
1,647,594 + -0.5
1,647,655 - -2.1
1,647,666 - -1.7
1,647,690 + MPMX20_01567 0.11 -3.4
1,647,690 + MPMX20_01567 0.11 -0.6
1,647,690 + MPMX20_01567 0.11 -0.9
1,647,698 - MPMX20_01567 0.11 -3.4
1,647,734 - MPMX20_01567 0.14 -0.3
1,647,773 - MPMX20_01567 0.17 -3.9
1,647,773 - MPMX20_01567 0.17 +1.1
1,647,945 + MPMX20_01567 0.31 -4.0
1,648,061 - MPMX20_01567 0.40 -1.7
1,648,078 + MPMX20_01567 0.41 +0.7
1,648,078 + MPMX20_01567 0.41 -0.7
1,648,078 + MPMX20_01567 0.41 -0.6
1,648,086 - MPMX20_01567 0.42 +0.1
1,648,086 - MPMX20_01567 0.42 -0.7
1,648,086 - MPMX20_01567 0.42 -1.9
1,648,086 - MPMX20_01567 0.42 -3.0
1,648,108 - MPMX20_01567 0.43 -0.1
1,648,144 + MPMX20_01567 0.46 +0.4
1,648,180 - MPMX20_01567 0.49 -0.4
1,648,185 + MPMX20_01567 0.49 -1.9
1,648,240 - MPMX20_01567 0.54 -2.0
1,648,253 + MPMX20_01567 0.55 -3.7
1,648,349 - MPMX20_01567 0.62 -3.4
1,648,604 - MPMX20_01567 0.82 -1.9
1,648,606 + MPMX20_01567 0.82 +0.0
1,648,640 + MPMX20_01567 0.85 +0.7
1,648,667 + MPMX20_01567 0.87 -0.7
1,648,785 + -4.1
1,648,824 - +0.4
1,648,856 + +0.7
1,648,904 - -2.1
1,648,920 - -2.3
1,648,935 - +0.0
1,648,946 + -0.1
1,648,946 + +1.6
1,648,946 - -1.0
1,648,954 - +0.9
1,649,011 + -3.1
1,649,011 + +0.1
1,649,049 + +0.3
1,649,079 - +3.4

Or see this region's nucleotide sequence