Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01566 and MPMX20_01567 are separated by 69 nucleotides MPMX20_01567 and MPMX20_01568 are separated by 253 nucleotides
MPMX20_01566: MPMX20_01566 - Phosphoserine aminotransferase, at 1,646,393 to 1,647,481
_01566
MPMX20_01567: MPMX20_01567 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,647,551 to 1,648,834
_01567
MPMX20_01568: MPMX20_01568 - Cytidylate kinase, at 1,649,088 to 1,649,771
_01568
Position (kb)
1647
1648
1649 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1646.570 kb on + strand, within MPMX20_01566 at 1646.572 kb on + strand, within MPMX20_01566 at 1646.578 kb on - strand, within MPMX20_01566 at 1646.578 kb on - strand, within MPMX20_01566 at 1646.597 kb on + strand, within MPMX20_01566 at 1646.605 kb on - strand, within MPMX20_01566 at 1646.678 kb on - strand, within MPMX20_01566 at 1646.687 kb on - strand, within MPMX20_01566 at 1646.766 kb on + strand, within MPMX20_01566 at 1646.784 kb on - strand, within MPMX20_01566 at 1646.796 kb on - strand, within MPMX20_01566 at 1646.799 kb on + strand, within MPMX20_01566 at 1646.876 kb on + strand, within MPMX20_01566 at 1646.960 kb on + strand, within MPMX20_01566 at 1646.976 kb on - strand, within MPMX20_01566 at 1647.037 kb on + strand, within MPMX20_01566 at 1647.037 kb on + strand, within MPMX20_01566 at 1647.037 kb on - strand, within MPMX20_01566 at 1647.045 kb on - strand, within MPMX20_01566 at 1647.051 kb on + strand, within MPMX20_01566 at 1647.065 kb on + strand, within MPMX20_01566 at 1647.070 kb on + strand, within MPMX20_01566 at 1647.080 kb on + strand, within MPMX20_01566 at 1647.130 kb on + strand, within MPMX20_01566 at 1647.134 kb on - strand, within MPMX20_01566 at 1647.143 kb on - strand, within MPMX20_01566 at 1647.143 kb on - strand, within MPMX20_01566 at 1647.143 kb on - strand, within MPMX20_01566 at 1647.148 kb on - strand, within MPMX20_01566 at 1647.148 kb on - strand, within MPMX20_01566 at 1647.225 kb on - strand, within MPMX20_01566 at 1647.303 kb on - strand, within MPMX20_01566 at 1647.327 kb on - strand, within MPMX20_01566 at 1647.327 kb on - strand, within MPMX20_01566 at 1647.388 kb on - strand at 1647.438 kb on - strand at 1647.489 kb on + strand at 1647.500 kb on + strand at 1647.500 kb on + strand at 1647.500 kb on + strand at 1647.557 kb on + strand at 1647.594 kb on + strand at 1647.655 kb on - strand at 1647.666 kb on - strand at 1647.690 kb on + strand, within MPMX20_01567 at 1647.690 kb on + strand, within MPMX20_01567 at 1647.690 kb on + strand, within MPMX20_01567 at 1647.698 kb on - strand, within MPMX20_01567 at 1647.734 kb on - strand, within MPMX20_01567 at 1647.773 kb on - strand, within MPMX20_01567 at 1647.773 kb on - strand, within MPMX20_01567 at 1647.945 kb on + strand, within MPMX20_01567 at 1648.061 kb on - strand, within MPMX20_01567 at 1648.078 kb on + strand, within MPMX20_01567 at 1648.078 kb on + strand, within MPMX20_01567 at 1648.078 kb on + strand, within MPMX20_01567 at 1648.086 kb on - strand, within MPMX20_01567 at 1648.086 kb on - strand, within MPMX20_01567 at 1648.086 kb on - strand, within MPMX20_01567 at 1648.086 kb on - strand, within MPMX20_01567 at 1648.108 kb on - strand, within MPMX20_01567 at 1648.144 kb on + strand, within MPMX20_01567 at 1648.180 kb on - strand, within MPMX20_01567 at 1648.185 kb on + strand, within MPMX20_01567 at 1648.240 kb on - strand, within MPMX20_01567 at 1648.253 kb on + strand, within MPMX20_01567 at 1648.349 kb on - strand, within MPMX20_01567 at 1648.604 kb on - strand, within MPMX20_01567 at 1648.606 kb on + strand, within MPMX20_01567 at 1648.640 kb on + strand, within MPMX20_01567 at 1648.667 kb on + strand, within MPMX20_01567 at 1648.785 kb on + strand at 1648.824 kb on - strand at 1648.856 kb on + strand at 1648.904 kb on - strand at 1648.920 kb on - strand at 1648.935 kb on - strand at 1648.946 kb on + strand at 1648.946 kb on + strand at 1648.946 kb on - strand at 1648.954 kb on - strand at 1649.011 kb on + strand at 1649.011 kb on + strand at 1649.049 kb on + strand at 1649.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 1,646,570 + MPMX20_01566 0.16 -1.6 1,646,572 + MPMX20_01566 0.16 +0.1 1,646,578 - MPMX20_01566 0.17 +0.3 1,646,578 - MPMX20_01566 0.17 -0.7 1,646,597 + MPMX20_01566 0.19 -0.5 1,646,605 - MPMX20_01566 0.19 -0.8 1,646,678 - MPMX20_01566 0.26 -0.2 1,646,687 - MPMX20_01566 0.27 -1.3 1,646,766 + MPMX20_01566 0.34 +0.7 1,646,784 - MPMX20_01566 0.36 +1.5 1,646,796 - MPMX20_01566 0.37 -3.7 1,646,799 + MPMX20_01566 0.37 -1.1 1,646,876 + MPMX20_01566 0.44 -0.9 1,646,960 + MPMX20_01566 0.52 -2.9 1,646,976 - MPMX20_01566 0.54 -0.3 1,647,037 + MPMX20_01566 0.59 -0.8 1,647,037 + MPMX20_01566 0.59 -3.8 1,647,037 - MPMX20_01566 0.59 -0.3 1,647,045 - MPMX20_01566 0.60 -3.2 1,647,051 + MPMX20_01566 0.60 -1.7 1,647,065 + MPMX20_01566 0.62 -0.1 1,647,070 + MPMX20_01566 0.62 -4.9 1,647,080 + MPMX20_01566 0.63 -5.6 1,647,130 + MPMX20_01566 0.68 -2.6 1,647,134 - MPMX20_01566 0.68 +0.5 1,647,143 - MPMX20_01566 0.69 -2.9 1,647,143 - MPMX20_01566 0.69 -2.5 1,647,143 - MPMX20_01566 0.69 -2.4 1,647,148 - MPMX20_01566 0.69 +1.2 1,647,148 - MPMX20_01566 0.69 -1.8 1,647,225 - MPMX20_01566 0.76 -2.3 1,647,303 - MPMX20_01566 0.84 -5.2 1,647,327 - MPMX20_01566 0.86 -0.0 1,647,327 - MPMX20_01566 0.86 -3.2 1,647,388 - -3.6 1,647,438 - -0.7 1,647,489 + +0.8 1,647,500 + -0.0 1,647,500 + +2.3 1,647,500 + +0.2 1,647,557 + -3.7 1,647,594 + -0.5 1,647,655 - -2.1 1,647,666 - -1.7 1,647,690 + MPMX20_01567 0.11 -3.4 1,647,690 + MPMX20_01567 0.11 -0.6 1,647,690 + MPMX20_01567 0.11 -0.9 1,647,698 - MPMX20_01567 0.11 -3.4 1,647,734 - MPMX20_01567 0.14 -0.3 1,647,773 - MPMX20_01567 0.17 -3.9 1,647,773 - MPMX20_01567 0.17 +1.1 1,647,945 + MPMX20_01567 0.31 -4.0 1,648,061 - MPMX20_01567 0.40 -1.7 1,648,078 + MPMX20_01567 0.41 +0.7 1,648,078 + MPMX20_01567 0.41 -0.7 1,648,078 + MPMX20_01567 0.41 -0.6 1,648,086 - MPMX20_01567 0.42 +0.1 1,648,086 - MPMX20_01567 0.42 -0.7 1,648,086 - MPMX20_01567 0.42 -1.9 1,648,086 - MPMX20_01567 0.42 -3.0 1,648,108 - MPMX20_01567 0.43 -0.1 1,648,144 + MPMX20_01567 0.46 +0.4 1,648,180 - MPMX20_01567 0.49 -0.4 1,648,185 + MPMX20_01567 0.49 -1.9 1,648,240 - MPMX20_01567 0.54 -2.0 1,648,253 + MPMX20_01567 0.55 -3.7 1,648,349 - MPMX20_01567 0.62 -3.4 1,648,604 - MPMX20_01567 0.82 -1.9 1,648,606 + MPMX20_01567 0.82 +0.0 1,648,640 + MPMX20_01567 0.85 +0.7 1,648,667 + MPMX20_01567 0.87 -0.7 1,648,785 + -4.1 1,648,824 - +0.4 1,648,856 + +0.7 1,648,904 - -2.1 1,648,920 - -2.3 1,648,935 - +0.0 1,648,946 + -0.1 1,648,946 + +1.6 1,648,946 - -1.0 1,648,954 - +0.9 1,649,011 + -3.1 1,649,011 + +0.1 1,649,049 + +0.3 1,649,079 - +3.4
Or see this region's nucleotide sequence