Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01432 and MPMX20_01433 are separated by 115 nucleotides MPMX20_01433 and MPMX20_01434 are separated by 285 nucleotides MPMX20_01434 and MPMX20_01435 are separated by 117 nucleotides MPMX20_01435 and MPMX20_01436 are separated by 243 nucleotides
MPMX20_01432: MPMX20_01432 - putative protein YbiB, at 1,497,211 to 1,498,173
_01432
MPMX20_01433: MPMX20_01433 - putative protein McbA, at 1,498,289 to 1,498,549
_01433
MPMX20_01434: MPMX20_01434 - putative protein YbiI, at 1,498,835 to 1,499,101
_01434
MPMX20_01435: MPMX20_01435 - putative protein McbA, at 1,499,219 to 1,499,485
_01435
MPMX20_01436: MPMX20_01436 - Ribosomal RNA large subunit methyltransferase F, at 1,499,729 to 1,500,640
_01436
Position (kb)
1498
1499
1500 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1497.898 kb on - strand, within MPMX20_01432 at 1497.903 kb on + strand, within MPMX20_01432 at 1497.916 kb on - strand, within MPMX20_01432 at 1497.926 kb on + strand, within MPMX20_01432 at 1497.933 kb on + strand, within MPMX20_01432 at 1497.934 kb on - strand, within MPMX20_01432 at 1497.979 kb on + strand, within MPMX20_01432 at 1498.036 kb on - strand, within MPMX20_01432 at 1498.040 kb on + strand, within MPMX20_01432 at 1498.040 kb on + strand, within MPMX20_01432 at 1498.040 kb on + strand, within MPMX20_01432 at 1498.228 kb on - strand at 1498.238 kb on + strand at 1498.239 kb on + strand at 1498.247 kb on - strand at 1498.254 kb on + strand at 1498.257 kb on - strand at 1498.257 kb on - strand at 1498.259 kb on + strand at 1498.268 kb on - strand at 1498.270 kb on + strand at 1498.303 kb on + strand at 1498.303 kb on + strand at 1498.311 kb on - strand at 1498.311 kb on - strand at 1498.340 kb on + strand, within MPMX20_01433 at 1498.340 kb on + strand, within MPMX20_01433 at 1498.341 kb on - strand, within MPMX20_01433 at 1498.403 kb on + strand, within MPMX20_01433 at 1498.420 kb on - strand, within MPMX20_01433 at 1498.513 kb on + strand, within MPMX20_01433 at 1498.521 kb on - strand, within MPMX20_01433 at 1498.542 kb on - strand at 1498.649 kb on - strand at 1498.719 kb on - strand at 1498.799 kb on - strand at 1498.868 kb on + strand, within MPMX20_01434 at 1498.952 kb on - strand, within MPMX20_01434 at 1498.952 kb on - strand, within MPMX20_01434 at 1498.989 kb on - strand, within MPMX20_01434 at 1499.098 kb on - strand at 1499.102 kb on + strand at 1499.108 kb on + strand at 1499.108 kb on + strand at 1499.110 kb on - strand at 1499.166 kb on - strand at 1499.176 kb on - strand at 1499.178 kb on + strand at 1499.283 kb on + strand, within MPMX20_01435 at 1499.283 kb on + strand, within MPMX20_01435 at 1499.291 kb on - strand, within MPMX20_01435 at 1499.291 kb on - strand, within MPMX20_01435 at 1499.321 kb on + strand, within MPMX20_01435 at 1499.331 kb on + strand, within MPMX20_01435 at 1499.332 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.373 kb on + strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.381 kb on - strand, within MPMX20_01435 at 1499.411 kb on - strand, within MPMX20_01435 at 1499.469 kb on - strand at 1499.495 kb on - strand at 1499.502 kb on + strand at 1499.542 kb on - strand at 1499.617 kb on + strand at 1499.697 kb on + strand at 1499.703 kb on - strand at 1499.720 kb on - strand at 1499.784 kb on + strand at 1499.803 kb on + strand at 1499.803 kb on + strand at 1499.806 kb on - strand at 1499.811 kb on - strand at 1499.816 kb on + strand at 1499.821 kb on + strand, within MPMX20_01436 at 1499.821 kb on + strand, within MPMX20_01436 at 1499.829 kb on - strand, within MPMX20_01436 at 1499.833 kb on + strand, within MPMX20_01436 at 1499.880 kb on + strand, within MPMX20_01436 at 1499.895 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.914 kb on + strand, within MPMX20_01436 at 1499.922 kb on - strand, within MPMX20_01436 at 1499.922 kb on - strand, within MPMX20_01436 at 1499.922 kb on - strand, within MPMX20_01436 at 1499.922 kb on - strand, within MPMX20_01436 at 1499.922 kb on - strand, within MPMX20_01436 at 1499.922 kb on - strand, within MPMX20_01436 at 1500.027 kb on - strand, within MPMX20_01436 at 1500.046 kb on - strand, within MPMX20_01436 at 1500.082 kb on - strand, within MPMX20_01436
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 1,497,898 - MPMX20_01432 0.71 -1.9 1,497,903 + MPMX20_01432 0.72 +0.5 1,497,916 - MPMX20_01432 0.73 -3.0 1,497,926 + MPMX20_01432 0.74 -0.5 1,497,933 + MPMX20_01432 0.75 +0.6 1,497,934 - MPMX20_01432 0.75 -2.9 1,497,979 + MPMX20_01432 0.80 -2.0 1,498,036 - MPMX20_01432 0.86 -0.6 1,498,040 + MPMX20_01432 0.86 +2.3 1,498,040 + MPMX20_01432 0.86 -2.1 1,498,040 + MPMX20_01432 0.86 -2.7 1,498,228 - +2.5 1,498,238 + -1.6 1,498,239 + -0.3 1,498,247 - -0.0 1,498,254 + +0.0 1,498,257 - +0.5 1,498,257 - -0.8 1,498,259 + -3.1 1,498,268 - -0.3 1,498,270 + +0.5 1,498,303 + -0.6 1,498,303 + -0.1 1,498,311 - -2.1 1,498,311 - -2.7 1,498,340 + MPMX20_01433 0.20 -1.2 1,498,340 + MPMX20_01433 0.20 -3.3 1,498,341 - MPMX20_01433 0.20 +0.2 1,498,403 + MPMX20_01433 0.44 -1.4 1,498,420 - MPMX20_01433 0.50 +1.6 1,498,513 + MPMX20_01433 0.86 -0.8 1,498,521 - MPMX20_01433 0.89 -0.8 1,498,542 - +0.7 1,498,649 - +1.4 1,498,719 - -2.4 1,498,799 - -2.0 1,498,868 + MPMX20_01434 0.12 -0.9 1,498,952 - MPMX20_01434 0.44 -3.4 1,498,952 - MPMX20_01434 0.44 -2.3 1,498,989 - MPMX20_01434 0.58 -4.1 1,499,098 - -2.1 1,499,102 + +0.3 1,499,108 + -2.1 1,499,108 + +1.6 1,499,110 - -4.3 1,499,166 - +1.4 1,499,176 - -0.3 1,499,178 + -1.1 1,499,283 + MPMX20_01435 0.24 -0.8 1,499,283 + MPMX20_01435 0.24 +1.6 1,499,291 - MPMX20_01435 0.27 -2.0 1,499,291 - MPMX20_01435 0.27 +1.2 1,499,321 + MPMX20_01435 0.38 -0.4 1,499,331 + MPMX20_01435 0.42 +3.5 1,499,332 + MPMX20_01435 0.42 +0.5 1,499,373 + MPMX20_01435 0.58 +0.2 1,499,373 + MPMX20_01435 0.58 -1.6 1,499,373 + MPMX20_01435 0.58 +0.9 1,499,373 + MPMX20_01435 0.58 -0.3 1,499,373 + MPMX20_01435 0.58 +0.1 1,499,373 + MPMX20_01435 0.58 +0.4 1,499,373 + MPMX20_01435 0.58 +0.1 1,499,373 + MPMX20_01435 0.58 +0.7 1,499,373 + MPMX20_01435 0.58 +1.8 1,499,373 + MPMX20_01435 0.58 -2.6 1,499,373 + MPMX20_01435 0.58 +1.3 1,499,373 + MPMX20_01435 0.58 -0.6 1,499,381 - MPMX20_01435 0.61 -0.0 1,499,381 - MPMX20_01435 0.61 -0.4 1,499,381 - MPMX20_01435 0.61 -1.1 1,499,381 - MPMX20_01435 0.61 -1.1 1,499,381 - MPMX20_01435 0.61 +0.1 1,499,411 - MPMX20_01435 0.72 +0.1 1,499,469 - +2.0 1,499,495 - +1.3 1,499,502 + +2.5 1,499,542 - -0.5 1,499,617 + +0.9 1,499,697 + +1.7 1,499,703 - -0.1 1,499,720 - -1.3 1,499,784 + +0.1 1,499,803 + -0.7 1,499,803 + -0.5 1,499,806 - -1.9 1,499,811 - +1.4 1,499,816 + -3.7 1,499,821 + MPMX20_01436 0.10 +0.2 1,499,821 + MPMX20_01436 0.10 -0.3 1,499,829 - MPMX20_01436 0.11 -2.1 1,499,833 + MPMX20_01436 0.11 +0.4 1,499,880 + MPMX20_01436 0.17 +1.9 1,499,895 + MPMX20_01436 0.18 -0.6 1,499,914 + MPMX20_01436 0.20 -2.2 1,499,914 + MPMX20_01436 0.20 -3.2 1,499,914 + MPMX20_01436 0.20 +0.3 1,499,914 + MPMX20_01436 0.20 -0.6 1,499,914 + MPMX20_01436 0.20 -2.4 1,499,914 + MPMX20_01436 0.20 -0.4 1,499,914 + MPMX20_01436 0.20 -0.6 1,499,914 + MPMX20_01436 0.20 +1.0 1,499,914 + MPMX20_01436 0.20 +1.3 1,499,922 - MPMX20_01436 0.21 +0.8 1,499,922 - MPMX20_01436 0.21 +0.8 1,499,922 - MPMX20_01436 0.21 +1.1 1,499,922 - MPMX20_01436 0.21 -0.1 1,499,922 - MPMX20_01436 0.21 -1.3 1,499,922 - MPMX20_01436 0.21 -2.6 1,500,027 - MPMX20_01436 0.33 -0.6 1,500,046 - MPMX20_01436 0.35 +1.2 1,500,082 - MPMX20_01436 0.39 +0.1
Or see this region's nucleotide sequence