Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01434

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01432 and MPMX20_01433 are separated by 115 nucleotidesMPMX20_01433 and MPMX20_01434 are separated by 285 nucleotidesMPMX20_01434 and MPMX20_01435 are separated by 117 nucleotidesMPMX20_01435 and MPMX20_01436 are separated by 243 nucleotides MPMX20_01432: MPMX20_01432 - putative protein YbiB, at 1,497,211 to 1,498,173 _01432 MPMX20_01433: MPMX20_01433 - putative protein McbA, at 1,498,289 to 1,498,549 _01433 MPMX20_01434: MPMX20_01434 - putative protein YbiI, at 1,498,835 to 1,499,101 _01434 MPMX20_01435: MPMX20_01435 - putative protein McbA, at 1,499,219 to 1,499,485 _01435 MPMX20_01436: MPMX20_01436 - Ribosomal RNA large subunit methyltransferase F, at 1,499,729 to 1,500,640 _01436 Position (kb) 1498 1499 1500Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1497.898 kb on - strand, within MPMX20_01432at 1497.903 kb on + strand, within MPMX20_01432at 1497.916 kb on - strand, within MPMX20_01432at 1497.926 kb on + strand, within MPMX20_01432at 1497.933 kb on + strand, within MPMX20_01432at 1497.934 kb on - strand, within MPMX20_01432at 1497.979 kb on + strand, within MPMX20_01432at 1498.036 kb on - strand, within MPMX20_01432at 1498.040 kb on + strand, within MPMX20_01432at 1498.040 kb on + strand, within MPMX20_01432at 1498.040 kb on + strand, within MPMX20_01432at 1498.228 kb on - strandat 1498.238 kb on + strandat 1498.239 kb on + strandat 1498.247 kb on - strandat 1498.254 kb on + strandat 1498.257 kb on - strandat 1498.257 kb on - strandat 1498.259 kb on + strandat 1498.268 kb on - strandat 1498.270 kb on + strandat 1498.303 kb on + strandat 1498.303 kb on + strandat 1498.311 kb on - strandat 1498.311 kb on - strandat 1498.340 kb on + strand, within MPMX20_01433at 1498.340 kb on + strand, within MPMX20_01433at 1498.341 kb on - strand, within MPMX20_01433at 1498.403 kb on + strand, within MPMX20_01433at 1498.420 kb on - strand, within MPMX20_01433at 1498.513 kb on + strand, within MPMX20_01433at 1498.521 kb on - strand, within MPMX20_01433at 1498.542 kb on - strandat 1498.649 kb on - strandat 1498.719 kb on - strandat 1498.799 kb on - strandat 1498.868 kb on + strand, within MPMX20_01434at 1498.952 kb on - strand, within MPMX20_01434at 1498.952 kb on - strand, within MPMX20_01434at 1498.989 kb on - strand, within MPMX20_01434at 1499.098 kb on - strandat 1499.102 kb on + strandat 1499.108 kb on + strandat 1499.108 kb on + strandat 1499.110 kb on - strandat 1499.166 kb on - strandat 1499.176 kb on - strandat 1499.178 kb on + strandat 1499.283 kb on + strand, within MPMX20_01435at 1499.283 kb on + strand, within MPMX20_01435at 1499.291 kb on - strand, within MPMX20_01435at 1499.291 kb on - strand, within MPMX20_01435at 1499.321 kb on + strand, within MPMX20_01435at 1499.331 kb on + strand, within MPMX20_01435at 1499.332 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.411 kb on - strand, within MPMX20_01435at 1499.469 kb on - strandat 1499.495 kb on - strandat 1499.502 kb on + strandat 1499.542 kb on - strandat 1499.617 kb on + strandat 1499.697 kb on + strandat 1499.703 kb on - strandat 1499.720 kb on - strandat 1499.784 kb on + strandat 1499.803 kb on + strandat 1499.803 kb on + strandat 1499.806 kb on - strandat 1499.811 kb on - strandat 1499.816 kb on + strandat 1499.821 kb on + strand, within MPMX20_01436at 1499.821 kb on + strand, within MPMX20_01436at 1499.829 kb on - strand, within MPMX20_01436at 1499.833 kb on + strand, within MPMX20_01436at 1499.880 kb on + strand, within MPMX20_01436at 1499.895 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1500.027 kb on - strand, within MPMX20_01436at 1500.046 kb on - strand, within MPMX20_01436at 1500.082 kb on - strand, within MPMX20_01436

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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1,497,898 - MPMX20_01432 0.71 -1.9
1,497,903 + MPMX20_01432 0.72 +0.5
1,497,916 - MPMX20_01432 0.73 -3.0
1,497,926 + MPMX20_01432 0.74 -0.5
1,497,933 + MPMX20_01432 0.75 +0.6
1,497,934 - MPMX20_01432 0.75 -2.9
1,497,979 + MPMX20_01432 0.80 -2.0
1,498,036 - MPMX20_01432 0.86 -0.6
1,498,040 + MPMX20_01432 0.86 +2.3
1,498,040 + MPMX20_01432 0.86 -2.1
1,498,040 + MPMX20_01432 0.86 -2.7
1,498,228 - +2.5
1,498,238 + -1.6
1,498,239 + -0.3
1,498,247 - -0.0
1,498,254 + +0.0
1,498,257 - +0.5
1,498,257 - -0.8
1,498,259 + -3.1
1,498,268 - -0.3
1,498,270 + +0.5
1,498,303 + -0.6
1,498,303 + -0.1
1,498,311 - -2.1
1,498,311 - -2.7
1,498,340 + MPMX20_01433 0.20 -1.2
1,498,340 + MPMX20_01433 0.20 -3.3
1,498,341 - MPMX20_01433 0.20 +0.2
1,498,403 + MPMX20_01433 0.44 -1.4
1,498,420 - MPMX20_01433 0.50 +1.6
1,498,513 + MPMX20_01433 0.86 -0.8
1,498,521 - MPMX20_01433 0.89 -0.8
1,498,542 - +0.7
1,498,649 - +1.4
1,498,719 - -2.4
1,498,799 - -2.0
1,498,868 + MPMX20_01434 0.12 -0.9
1,498,952 - MPMX20_01434 0.44 -3.4
1,498,952 - MPMX20_01434 0.44 -2.3
1,498,989 - MPMX20_01434 0.58 -4.1
1,499,098 - -2.1
1,499,102 + +0.3
1,499,108 + -2.1
1,499,108 + +1.6
1,499,110 - -4.3
1,499,166 - +1.4
1,499,176 - -0.3
1,499,178 + -1.1
1,499,283 + MPMX20_01435 0.24 -0.8
1,499,283 + MPMX20_01435 0.24 +1.6
1,499,291 - MPMX20_01435 0.27 -2.0
1,499,291 - MPMX20_01435 0.27 +1.2
1,499,321 + MPMX20_01435 0.38 -0.4
1,499,331 + MPMX20_01435 0.42 +3.5
1,499,332 + MPMX20_01435 0.42 +0.5
1,499,373 + MPMX20_01435 0.58 +0.2
1,499,373 + MPMX20_01435 0.58 -1.6
1,499,373 + MPMX20_01435 0.58 +0.9
1,499,373 + MPMX20_01435 0.58 -0.3
1,499,373 + MPMX20_01435 0.58 +0.1
1,499,373 + MPMX20_01435 0.58 +0.4
1,499,373 + MPMX20_01435 0.58 +0.1
1,499,373 + MPMX20_01435 0.58 +0.7
1,499,373 + MPMX20_01435 0.58 +1.8
1,499,373 + MPMX20_01435 0.58 -2.6
1,499,373 + MPMX20_01435 0.58 +1.3
1,499,373 + MPMX20_01435 0.58 -0.6
1,499,381 - MPMX20_01435 0.61 -0.0
1,499,381 - MPMX20_01435 0.61 -0.4
1,499,381 - MPMX20_01435 0.61 -1.1
1,499,381 - MPMX20_01435 0.61 -1.1
1,499,381 - MPMX20_01435 0.61 +0.1
1,499,411 - MPMX20_01435 0.72 +0.1
1,499,469 - +2.0
1,499,495 - +1.3
1,499,502 + +2.5
1,499,542 - -0.5
1,499,617 + +0.9
1,499,697 + +1.7
1,499,703 - -0.1
1,499,720 - -1.3
1,499,784 + +0.1
1,499,803 + -0.7
1,499,803 + -0.5
1,499,806 - -1.9
1,499,811 - +1.4
1,499,816 + -3.7
1,499,821 + MPMX20_01436 0.10 +0.2
1,499,821 + MPMX20_01436 0.10 -0.3
1,499,829 - MPMX20_01436 0.11 -2.1
1,499,833 + MPMX20_01436 0.11 +0.4
1,499,880 + MPMX20_01436 0.17 +1.9
1,499,895 + MPMX20_01436 0.18 -0.6
1,499,914 + MPMX20_01436 0.20 -2.2
1,499,914 + MPMX20_01436 0.20 -3.2
1,499,914 + MPMX20_01436 0.20 +0.3
1,499,914 + MPMX20_01436 0.20 -0.6
1,499,914 + MPMX20_01436 0.20 -2.4
1,499,914 + MPMX20_01436 0.20 -0.4
1,499,914 + MPMX20_01436 0.20 -0.6
1,499,914 + MPMX20_01436 0.20 +1.0
1,499,914 + MPMX20_01436 0.20 +1.3
1,499,922 - MPMX20_01436 0.21 +0.8
1,499,922 - MPMX20_01436 0.21 +0.8
1,499,922 - MPMX20_01436 0.21 +1.1
1,499,922 - MPMX20_01436 0.21 -0.1
1,499,922 - MPMX20_01436 0.21 -1.3
1,499,922 - MPMX20_01436 0.21 -2.6
1,500,027 - MPMX20_01436 0.33 -0.6
1,500,046 - MPMX20_01436 0.35 +1.2
1,500,082 - MPMX20_01436 0.39 +0.1

Or see this region's nucleotide sequence