Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00968

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00966 and MPMX20_00967 overlap by 4 nucleotidesMPMX20_00967 and MPMX20_00968 are separated by 249 nucleotidesMPMX20_00968 and MPMX20_00969 overlap by 4 nucleotides MPMX20_00966: MPMX20_00966 - hypothetical protein, at 1,019,271 to 1,020,368 _00966 MPMX20_00967: MPMX20_00967 - Inner membrane protein YaiY, at 1,020,365 to 1,020,667 _00967 MPMX20_00968: MPMX20_00968 - hypothetical protein, at 1,020,917 to 1,021,153 _00968 MPMX20_00969: MPMX20_00969 - D-alanine--D-alanine ligase A, at 1,021,150 to 1,022,250 _00969 Position (kb) 1020 1021 1022Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1019.945 kb on - strand, within MPMX20_00966at 1019.972 kb on + strand, within MPMX20_00966at 1019.972 kb on + strand, within MPMX20_00966at 1019.972 kb on + strand, within MPMX20_00966at 1020.037 kb on + strand, within MPMX20_00966at 1020.099 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.127 kb on + strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.135 kb on - strand, within MPMX20_00966at 1020.203 kb on + strand, within MPMX20_00966at 1020.203 kb on + strand, within MPMX20_00966at 1020.256 kb on + strand, within MPMX20_00966at 1020.279 kb on - strandat 1020.298 kb on + strandat 1020.313 kb on - strandat 1020.361 kb on - strandat 1020.388 kb on + strandat 1020.404 kb on + strand, within MPMX20_00967at 1020.421 kb on - strand, within MPMX20_00967at 1020.439 kb on + strand, within MPMX20_00967at 1020.486 kb on + strand, within MPMX20_00967at 1020.486 kb on + strand, within MPMX20_00967at 1020.486 kb on + strand, within MPMX20_00967at 1020.494 kb on - strand, within MPMX20_00967at 1020.494 kb on - strand, within MPMX20_00967at 1020.494 kb on - strand, within MPMX20_00967at 1020.501 kb on + strand, within MPMX20_00967at 1020.526 kb on - strand, within MPMX20_00967at 1020.526 kb on - strand, within MPMX20_00967at 1020.528 kb on - strand, within MPMX20_00967at 1020.528 kb on - strand, within MPMX20_00967at 1020.564 kb on - strand, within MPMX20_00967at 1020.564 kb on - strand, within MPMX20_00967at 1020.586 kb on + strand, within MPMX20_00967at 1020.711 kb on + strandat 1020.725 kb on + strandat 1020.725 kb on + strandat 1020.725 kb on + strandat 1020.733 kb on - strandat 1020.733 kb on - strandat 1020.743 kb on + strandat 1020.766 kb on - strandat 1020.766 kb on - strandat 1020.784 kb on - strandat 1020.797 kb on - strandat 1020.858 kb on + strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.866 kb on - strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.927 kb on + strandat 1020.935 kb on - strandat 1020.935 kb on - strandat 1020.935 kb on - strandat 1020.961 kb on - strand, within MPMX20_00968at 1020.995 kb on + strand, within MPMX20_00968at 1021.006 kb on + strand, within MPMX20_00968at 1021.014 kb on - strand, within MPMX20_00968at 1021.033 kb on + strand, within MPMX20_00968at 1021.195 kb on - strandat 1021.219 kb on + strandat 1021.219 kb on + strandat 1021.227 kb on + strandat 1021.227 kb on - strandat 1021.227 kb on - strandat 1021.232 kb on + strandat 1021.235 kb on - strandat 1021.268 kb on - strand, within MPMX20_00969at 1021.268 kb on - strand, within MPMX20_00969at 1021.296 kb on - strand, within MPMX20_00969at 1021.296 kb on - strand, within MPMX20_00969at 1021.344 kb on + strand, within MPMX20_00969at 1021.380 kb on + strand, within MPMX20_00969at 1021.443 kb on + strand, within MPMX20_00969at 1021.509 kb on - strand, within MPMX20_00969at 1021.523 kb on + strand, within MPMX20_00969at 1021.541 kb on + strand, within MPMX20_00969at 1021.554 kb on - strand, within MPMX20_00969at 1021.558 kb on + strand, within MPMX20_00969at 1021.630 kb on - strand, within MPMX20_00969at 1021.722 kb on - strand, within MPMX20_00969at 1021.744 kb on + strand, within MPMX20_00969at 1021.749 kb on + strand, within MPMX20_00969at 1021.749 kb on + strand, within MPMX20_00969at 1021.754 kb on + strand, within MPMX20_00969at 1021.789 kb on + strand, within MPMX20_00969at 1021.797 kb on - strand, within MPMX20_00969at 1021.797 kb on - strand, within MPMX20_00969at 1021.807 kb on - strand, within MPMX20_00969at 1021.849 kb on + strand, within MPMX20_00969at 1021.857 kb on + strand, within MPMX20_00969at 1021.857 kb on + strand, within MPMX20_00969at 1021.865 kb on - strand, within MPMX20_00969at 1021.891 kb on - strand, within MPMX20_00969at 1021.935 kb on + strand, within MPMX20_00969at 1021.935 kb on - strand, within MPMX20_00969at 1021.996 kb on + strand, within MPMX20_00969at 1022.001 kb on + strand, within MPMX20_00969at 1022.024 kb on + strand, within MPMX20_00969at 1022.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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1,019,945 - MPMX20_00966 0.61 -0.4
1,019,972 + MPMX20_00966 0.64 +1.2
1,019,972 + MPMX20_00966 0.64 -0.2
1,019,972 + MPMX20_00966 0.64 +0.3
1,020,037 + MPMX20_00966 0.70 -1.1
1,020,099 + MPMX20_00966 0.75 +0.6
1,020,127 + MPMX20_00966 0.78 +0.6
1,020,127 + MPMX20_00966 0.78 -1.7
1,020,127 + MPMX20_00966 0.78 -0.4
1,020,127 + MPMX20_00966 0.78 -1.1
1,020,127 + MPMX20_00966 0.78 -1.3
1,020,127 + MPMX20_00966 0.78 +1.1
1,020,135 - MPMX20_00966 0.79 +0.1
1,020,135 - MPMX20_00966 0.79 +0.9
1,020,135 - MPMX20_00966 0.79 +2.0
1,020,135 - MPMX20_00966 0.79 -4.3
1,020,135 - MPMX20_00966 0.79 +1.0
1,020,135 - MPMX20_00966 0.79 +0.5
1,020,203 + MPMX20_00966 0.85 -0.6
1,020,203 + MPMX20_00966 0.85 +1.1
1,020,256 + MPMX20_00966 0.90 +0.3
1,020,279 - +1.2
1,020,298 + +1.1
1,020,313 - +0.4
1,020,361 - -0.2
1,020,388 + +0.5
1,020,404 + MPMX20_00967 0.13 -0.2
1,020,421 - MPMX20_00967 0.18 -0.6
1,020,439 + MPMX20_00967 0.24 +0.9
1,020,486 + MPMX20_00967 0.40 -2.5
1,020,486 + MPMX20_00967 0.40 +0.5
1,020,486 + MPMX20_00967 0.40 -3.0
1,020,494 - MPMX20_00967 0.43 -0.8
1,020,494 - MPMX20_00967 0.43 -1.0
1,020,494 - MPMX20_00967 0.43 +1.1
1,020,501 + MPMX20_00967 0.45 -0.9
1,020,526 - MPMX20_00967 0.53 -1.3
1,020,526 - MPMX20_00967 0.53 -2.2
1,020,528 - MPMX20_00967 0.54 -2.5
1,020,528 - MPMX20_00967 0.54 +0.3
1,020,564 - MPMX20_00967 0.66 -0.5
1,020,564 - MPMX20_00967 0.66 +1.2
1,020,586 + MPMX20_00967 0.73 +0.5
1,020,711 + -2.3
1,020,725 + +0.4
1,020,725 + +0.8
1,020,725 + -1.1
1,020,733 - -2.7
1,020,733 - -2.1
1,020,743 + -1.4
1,020,766 - -0.7
1,020,766 - -3.1
1,020,784 - -0.6
1,020,797 - +0.5
1,020,858 + +0.1
1,020,866 - -4.1
1,020,866 - +1.0
1,020,866 - -1.2
1,020,866 - -3.5
1,020,866 - +1.4
1,020,866 - -3.2
1,020,866 - -0.2
1,020,927 + +0.5
1,020,927 + +2.1
1,020,927 + -3.9
1,020,927 + -2.7
1,020,927 + -3.2
1,020,927 + -1.8
1,020,927 + -0.4
1,020,935 - +0.1
1,020,935 - -2.1
1,020,935 - -1.0
1,020,961 - MPMX20_00968 0.19 -0.0
1,020,995 + MPMX20_00968 0.33 -0.9
1,021,006 + MPMX20_00968 0.38 -1.3
1,021,014 - MPMX20_00968 0.41 -3.9
1,021,033 + MPMX20_00968 0.49 -1.2
1,021,195 - -2.7
1,021,219 + -0.7
1,021,219 + -0.7
1,021,227 + +1.3
1,021,227 - -2.3
1,021,227 - +0.8
1,021,232 + +0.3
1,021,235 - +2.3
1,021,268 - MPMX20_00969 0.11 -0.9
1,021,268 - MPMX20_00969 0.11 -3.1
1,021,296 - MPMX20_00969 0.13 +1.2
1,021,296 - MPMX20_00969 0.13 +0.5
1,021,344 + MPMX20_00969 0.18 +0.8
1,021,380 + MPMX20_00969 0.21 -2.0
1,021,443 + MPMX20_00969 0.27 +0.2
1,021,509 - MPMX20_00969 0.33 -1.2
1,021,523 + MPMX20_00969 0.34 -1.3
1,021,541 + MPMX20_00969 0.36 +0.4
1,021,554 - MPMX20_00969 0.37 +0.1
1,021,558 + MPMX20_00969 0.37 -3.1
1,021,630 - MPMX20_00969 0.44 -0.3
1,021,722 - MPMX20_00969 0.52 -1.8
1,021,744 + MPMX20_00969 0.54 +1.9
1,021,749 + MPMX20_00969 0.54 +1.9
1,021,749 + MPMX20_00969 0.54 +0.1
1,021,754 + MPMX20_00969 0.55 -0.7
1,021,789 + MPMX20_00969 0.58 -3.8
1,021,797 - MPMX20_00969 0.59 -1.0
1,021,797 - MPMX20_00969 0.59 +0.9
1,021,807 - MPMX20_00969 0.60 +0.1
1,021,849 + MPMX20_00969 0.63 +2.2
1,021,857 + MPMX20_00969 0.64 -1.8
1,021,857 + MPMX20_00969 0.64 -1.3
1,021,865 - MPMX20_00969 0.65 -1.6
1,021,891 - MPMX20_00969 0.67 +1.9
1,021,935 + MPMX20_00969 0.71 +2.2
1,021,935 - MPMX20_00969 0.71 -1.1
1,021,996 + MPMX20_00969 0.77 +0.5
1,022,001 + MPMX20_00969 0.77 +1.1
1,022,024 + MPMX20_00969 0.79 -1.2
1,022,141 - -1.1

Or see this region's nucleotide sequence