Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00031 and MPMX20_00032 are separated by 3 nucleotides MPMX20_00032 and MPMX20_00033 are separated by 73 nucleotides MPMX20_00033 and MPMX20_00034 overlap by 4 nucleotides
MPMX20_00031: MPMX20_00031 - Acetolactate synthase isozyme 1 large subunit, at 31,948 to 33,636
_00031
MPMX20_00032: MPMX20_00032 - Acetolactate synthase isozyme 1 small subunit, at 33,640 to 33,927
_00032
MPMX20_00033: MPMX20_00033 - Transcriptional regulatory protein UhpA, at 34,001 to 34,594
_00033
MPMX20_00034: MPMX20_00034 - Signal transduction histidine-protein kinase/phosphatase UhpB, at 34,591 to 36,096
_00034
Position (kb) 33
34 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 32.651 kb on + strand, within MPMX20_00031 at 32.723 kb on - strand, within MPMX20_00031 at 32.838 kb on - strand, within MPMX20_00031 at 32.874 kb on - strand, within MPMX20_00031 at 32.876 kb on + strand, within MPMX20_00031 at 32.934 kb on + strand, within MPMX20_00031 at 33.031 kb on - strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.066 kb on + strand, within MPMX20_00031 at 33.094 kb on - strand, within MPMX20_00031 at 33.096 kb on - strand, within MPMX20_00031 at 33.116 kb on + strand, within MPMX20_00031 at 33.116 kb on + strand, within MPMX20_00031 at 33.124 kb on - strand, within MPMX20_00031 at 33.132 kb on + strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.140 kb on - strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.142 kb on + strand, within MPMX20_00031 at 33.147 kb on + strand, within MPMX20_00031 at 33.147 kb on + strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.150 kb on - strand, within MPMX20_00031 at 33.154 kb on + strand, within MPMX20_00031 at 33.155 kb on - strand, within MPMX20_00031 at 33.198 kb on - strand, within MPMX20_00031 at 33.240 kb on + strand, within MPMX20_00031 at 33.240 kb on + strand, within MPMX20_00031 at 33.248 kb on - strand, within MPMX20_00031 at 33.404 kb on - strand, within MPMX20_00031 at 33.418 kb on + strand, within MPMX20_00031 at 33.436 kb on - strand, within MPMX20_00031 at 33.464 kb on + strand, within MPMX20_00031 at 33.689 kb on + strand, within MPMX20_00032 at 33.690 kb on + strand, within MPMX20_00032 at 33.710 kb on + strand, within MPMX20_00032 at 33.766 kb on + strand, within MPMX20_00032 at 33.801 kb on + strand, within MPMX20_00032 at 33.809 kb on - strand, within MPMX20_00032 at 33.931 kb on + strand at 33.938 kb on + strand at 33.939 kb on - strand at 33.946 kb on - strand at 33.986 kb on + strand at 34.008 kb on + strand at 34.016 kb on - strand at 34.074 kb on - strand, within MPMX20_00033 at 34.142 kb on + strand, within MPMX20_00033 at 34.142 kb on + strand, within MPMX20_00033 at 34.148 kb on - strand, within MPMX20_00033 at 34.150 kb on - strand, within MPMX20_00033 at 34.150 kb on - strand, within MPMX20_00033 at 34.179 kb on + strand, within MPMX20_00033 at 34.238 kb on + strand, within MPMX20_00033 at 34.238 kb on + strand, within MPMX20_00033 at 34.246 kb on - strand, within MPMX20_00033 at 34.263 kb on + strand, within MPMX20_00033 at 34.271 kb on - strand, within MPMX20_00033 at 34.343 kb on + strand, within MPMX20_00033 at 34.406 kb on + strand, within MPMX20_00033 at 34.422 kb on - strand, within MPMX20_00033 at 34.435 kb on - strand, within MPMX20_00033 at 34.518 kb on + strand, within MPMX20_00033 at 34.518 kb on + strand, within MPMX20_00033 at 34.518 kb on + strand, within MPMX20_00033 at 34.676 kb on + strand at 34.694 kb on - strand at 34.763 kb on + strand, within MPMX20_00034 at 34.779 kb on + strand, within MPMX20_00034 at 34.872 kb on + strand, within MPMX20_00034 at 34.882 kb on + strand, within MPMX20_00034
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 32,651 + MPMX20_00031 0.42 -0.8 32,723 - MPMX20_00031 0.46 +0.2 32,838 - MPMX20_00031 0.53 +0.9 32,874 - MPMX20_00031 0.55 -3.6 32,876 + MPMX20_00031 0.55 -3.1 32,934 + MPMX20_00031 0.58 -3.8 33,031 - MPMX20_00031 0.64 -1.5 33,066 + MPMX20_00031 0.66 +0.4 33,066 + MPMX20_00031 0.66 +0.7 33,066 + MPMX20_00031 0.66 -3.8 33,066 + MPMX20_00031 0.66 -0.6 33,094 - MPMX20_00031 0.68 -0.7 33,096 - MPMX20_00031 0.68 -2.4 33,116 + MPMX20_00031 0.69 +0.2 33,116 + MPMX20_00031 0.69 -0.9 33,124 - MPMX20_00031 0.70 +0.2 33,132 + MPMX20_00031 0.70 +0.3 33,140 - MPMX20_00031 0.71 -0.6 33,140 - MPMX20_00031 0.71 +0.5 33,140 - MPMX20_00031 0.71 -1.9 33,140 - MPMX20_00031 0.71 +1.0 33,142 + MPMX20_00031 0.71 -2.6 33,142 + MPMX20_00031 0.71 +0.3 33,142 + MPMX20_00031 0.71 +1.5 33,142 + MPMX20_00031 0.71 -0.5 33,142 + MPMX20_00031 0.71 -0.5 33,142 + MPMX20_00031 0.71 -0.5 33,147 + MPMX20_00031 0.71 -0.3 33,147 + MPMX20_00031 0.71 +0.5 33,150 - MPMX20_00031 0.71 -1.4 33,150 - MPMX20_00031 0.71 -3.6 33,150 - MPMX20_00031 0.71 -3.7 33,150 - MPMX20_00031 0.71 -2.3 33,150 - MPMX20_00031 0.71 +1.0 33,150 - MPMX20_00031 0.71 -0.1 33,154 + MPMX20_00031 0.71 -0.9 33,155 - MPMX20_00031 0.71 +0.7 33,198 - MPMX20_00031 0.74 -1.1 33,240 + MPMX20_00031 0.76 -4.6 33,240 + MPMX20_00031 0.76 -0.8 33,248 - MPMX20_00031 0.77 +1.3 33,404 - MPMX20_00031 0.86 +1.5 33,418 + MPMX20_00031 0.87 -0.6 33,436 - MPMX20_00031 0.88 -4.1 33,464 + MPMX20_00031 0.90 +1.6 33,689 + MPMX20_00032 0.17 -3.8 33,690 + MPMX20_00032 0.17 -4.0 33,710 + MPMX20_00032 0.24 -2.6 33,766 + MPMX20_00032 0.44 -4.1 33,801 + MPMX20_00032 0.56 -0.6 33,809 - MPMX20_00032 0.59 -0.0 33,931 + -2.6 33,938 + -0.3 33,939 - +0.2 33,946 - -1.5 33,986 + -0.6 34,008 + +0.2 34,016 - +2.2 34,074 - MPMX20_00033 0.12 +0.5 34,142 + MPMX20_00033 0.24 -0.5 34,142 + MPMX20_00033 0.24 +0.5 34,148 - MPMX20_00033 0.25 -4.2 34,150 - MPMX20_00033 0.25 -0.4 34,150 - MPMX20_00033 0.25 -0.5 34,179 + MPMX20_00033 0.30 -0.3 34,238 + MPMX20_00033 0.40 -1.4 34,238 + MPMX20_00033 0.40 -2.9 34,246 - MPMX20_00033 0.41 -3.3 34,263 + MPMX20_00033 0.44 +1.1 34,271 - MPMX20_00033 0.45 +0.9 34,343 + MPMX20_00033 0.58 +1.6 34,406 + MPMX20_00033 0.68 -1.3 34,422 - MPMX20_00033 0.71 -0.3 34,435 - MPMX20_00033 0.73 +1.4 34,518 + MPMX20_00033 0.87 +0.8 34,518 + MPMX20_00033 0.87 +3.1 34,518 + MPMX20_00033 0.87 -2.9 34,676 + +1.2 34,694 - +0.3 34,763 + MPMX20_00034 0.11 +0.4 34,779 + MPMX20_00034 0.12 -0.2 34,872 + MPMX20_00034 0.19 -1.2 34,882 + MPMX20_00034 0.19 +1.2
Or see this region's nucleotide sequence