Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04226 and MPMX20_04227 are separated by 10 nucleotides MPMX20_04227 and MPMX20_04228 are separated by 32 nucleotides MPMX20_04228 and MPMX20_04229 are separated by 379 nucleotides MPMX20_04229 and MPMX20_04230 overlap by 17 nucleotides
MPMX20_04226: MPMX20_04226 - 50S ribosomal protein L4, at 4,414,415 to 4,415,020
_04226
MPMX20_04227: MPMX20_04227 - 50S ribosomal protein L3, at 4,415,031 to 4,415,660
_04227
MPMX20_04228: MPMX20_04228 - 30S ribosomal protein S10, at 4,415,693 to 4,416,004
_04228
MPMX20_04229: MPMX20_04229 - hypothetical protein, at 4,416,384 to 4,416,857
_04229
MPMX20_04230: MPMX20_04230 - Bacterioferritin, at 4,416,841 to 4,417,317
_04230
Position (kb) 4415
4416
4417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4416.272 kb on + strand at 4416.279 kb on + strand at 4416.287 kb on - strand at 4416.297 kb on - strand at 4416.393 kb on + strand at 4416.491 kb on + strand, within MPMX20_04229 at 4416.491 kb on + strand, within MPMX20_04229 at 4416.509 kb on - strand, within MPMX20_04229 at 4416.509 kb on - strand, within MPMX20_04229 at 4416.509 kb on - strand, within MPMX20_04229 at 4416.521 kb on + strand, within MPMX20_04229 at 4416.570 kb on + strand, within MPMX20_04229 at 4416.578 kb on - strand, within MPMX20_04229 at 4416.605 kb on + strand, within MPMX20_04229 at 4416.613 kb on - strand, within MPMX20_04229 at 4416.632 kb on - strand, within MPMX20_04229 at 4416.638 kb on - strand, within MPMX20_04229 at 4416.649 kb on - strand, within MPMX20_04229 at 4416.692 kb on - strand, within MPMX20_04229 at 4416.698 kb on + strand, within MPMX20_04229 at 4416.734 kb on + strand, within MPMX20_04229 at 4416.813 kb on + strand at 4416.911 kb on + strand, within MPMX20_04230 at 4416.911 kb on + strand, within MPMX20_04230 at 4416.919 kb on - strand, within MPMX20_04230 at 4416.979 kb on + strand, within MPMX20_04230 at 4416.979 kb on + strand, within MPMX20_04230 at 4416.981 kb on + strand, within MPMX20_04230 at 4416.987 kb on - strand, within MPMX20_04230 at 4416.987 kb on - strand, within MPMX20_04230 at 4416.989 kb on - strand, within MPMX20_04230 at 4416.989 kb on - strand, within MPMX20_04230 at 4417.000 kb on + strand, within MPMX20_04230
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,416,272 + +1.4 4,416,279 + +0.2 4,416,287 - -0.7 4,416,297 - -0.5 4,416,393 + -0.1 4,416,491 + MPMX20_04229 0.23 +1.2 4,416,491 + MPMX20_04229 0.23 -4.2 4,416,509 - MPMX20_04229 0.26 -0.5 4,416,509 - MPMX20_04229 0.26 -1.1 4,416,509 - MPMX20_04229 0.26 +0.9 4,416,521 + MPMX20_04229 0.29 -0.1 4,416,570 + MPMX20_04229 0.39 -0.7 4,416,578 - MPMX20_04229 0.41 +1.9 4,416,605 + MPMX20_04229 0.47 +0.5 4,416,613 - MPMX20_04229 0.48 -0.1 4,416,632 - MPMX20_04229 0.52 -1.4 4,416,638 - MPMX20_04229 0.54 -1.7 4,416,649 - MPMX20_04229 0.56 +0.5 4,416,692 - MPMX20_04229 0.65 +0.9 4,416,698 + MPMX20_04229 0.66 -0.8 4,416,734 + MPMX20_04229 0.74 -2.4 4,416,813 + -1.6 4,416,911 + MPMX20_04230 0.15 -2.8 4,416,911 + MPMX20_04230 0.15 +2.1 4,416,919 - MPMX20_04230 0.16 +0.1 4,416,979 + MPMX20_04230 0.29 +1.2 4,416,979 + MPMX20_04230 0.29 +1.0 4,416,981 + MPMX20_04230 0.29 +1.8 4,416,987 - MPMX20_04230 0.31 -1.7 4,416,987 - MPMX20_04230 0.31 -1.5 4,416,989 - MPMX20_04230 0.31 -0.9 4,416,989 - MPMX20_04230 0.31 +1.9 4,417,000 + MPMX20_04230 0.33 +1.5
Or see this region's nucleotide sequence