Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03431 and MPMX20_03432 are separated by 118 nucleotides MPMX20_03432 and MPMX20_03433 are separated by 56 nucleotides MPMX20_03433 and MPMX20_03434 overlap by 4 nucleotides MPMX20_03434 and MPMX20_03435 overlap by 1 nucleotides
MPMX20_03431: MPMX20_03431 - N-acetylmuramic acid 6-phosphate etherase, at 3,620,164 to 3,621,057
_03431
MPMX20_03432: MPMX20_03432 - HTH-type transcriptional regulator MurR, at 3,621,176 to 3,622,024
_03432
MPMX20_03433: MPMX20_03433 - Ferredoxin YfhL, at 3,622,081 to 3,622,341
_03433
MPMX20_03434: MPMX20_03434 - Holo-[acyl-carrier-protein] synthase, at 3,622,338 to 3,622,718
_03434
MPMX20_03435: MPMX20_03435 - Pyridoxine 5'-phosphate synthase, at 3,622,718 to 3,623,449
_03435
Position (kb)
3621
3622
3623 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3620.358 kb on + strand, within MPMX20_03431 at 3620.496 kb on - strand, within MPMX20_03431 at 3620.528 kb on + strand, within MPMX20_03431 at 3620.601 kb on + strand, within MPMX20_03431 at 3620.609 kb on - strand, within MPMX20_03431 at 3620.632 kb on + strand, within MPMX20_03431 at 3620.681 kb on - strand, within MPMX20_03431 at 3620.681 kb on - strand, within MPMX20_03431 at 3620.723 kb on - strand, within MPMX20_03431 at 3620.732 kb on + strand, within MPMX20_03431 at 3620.732 kb on + strand, within MPMX20_03431 at 3620.760 kb on + strand, within MPMX20_03431 at 3620.854 kb on + strand, within MPMX20_03431 at 3620.972 kb on + strand at 3620.985 kb on + strand at 3621.059 kb on - strand at 3621.173 kb on + strand at 3621.173 kb on + strand at 3621.173 kb on + strand at 3621.173 kb on + strand at 3621.173 kb on + strand at 3621.173 kb on + strand at 3621.181 kb on - strand at 3621.309 kb on + strand, within MPMX20_03432 at 3621.400 kb on + strand, within MPMX20_03432 at 3621.400 kb on - strand, within MPMX20_03432 at 3621.513 kb on + strand, within MPMX20_03432 at 3621.513 kb on + strand, within MPMX20_03432 at 3621.521 kb on - strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.591 kb on + strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.599 kb on - strand, within MPMX20_03432 at 3621.683 kb on - strand, within MPMX20_03432 at 3621.685 kb on + strand, within MPMX20_03432 at 3621.685 kb on + strand, within MPMX20_03432 at 3621.685 kb on + strand, within MPMX20_03432 at 3621.733 kb on + strand, within MPMX20_03432 at 3621.855 kb on + strand, within MPMX20_03432 at 3621.864 kb on - strand, within MPMX20_03432 at 3621.948 kb on + strand at 3621.948 kb on - strand at 3621.983 kb on - strand at 3621.996 kb on + strand at 3622.004 kb on - strand at 3622.004 kb on - strand at 3622.004 kb on - strand at 3622.018 kb on + strand at 3622.193 kb on + strand, within MPMX20_03433 at 3622.208 kb on + strand, within MPMX20_03433 at 3622.248 kb on + strand, within MPMX20_03433 at 3622.286 kb on - strand, within MPMX20_03433 at 3622.286 kb on - strand, within MPMX20_03433 at 3622.307 kb on + strand, within MPMX20_03433
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 3,620,358 + MPMX20_03431 0.22 +0.1 3,620,496 - MPMX20_03431 0.37 -2.0 3,620,528 + MPMX20_03431 0.41 -1.7 3,620,601 + MPMX20_03431 0.49 +0.2 3,620,609 - MPMX20_03431 0.50 -1.0 3,620,632 + MPMX20_03431 0.52 -0.8 3,620,681 - MPMX20_03431 0.58 -2.0 3,620,681 - MPMX20_03431 0.58 -1.9 3,620,723 - MPMX20_03431 0.63 -1.9 3,620,732 + MPMX20_03431 0.64 -1.0 3,620,732 + MPMX20_03431 0.64 -0.3 3,620,760 + MPMX20_03431 0.67 -2.0 3,620,854 + MPMX20_03431 0.77 -1.3 3,620,972 + +1.5 3,620,985 + +0.3 3,621,059 - +1.3 3,621,173 + +0.2 3,621,173 + +0.5 3,621,173 + +1.4 3,621,173 + -1.9 3,621,173 + -3.2 3,621,173 + +0.7 3,621,181 - -0.6 3,621,309 + MPMX20_03432 0.16 -0.1 3,621,400 + MPMX20_03432 0.26 +1.9 3,621,400 - MPMX20_03432 0.26 +1.5 3,621,513 + MPMX20_03432 0.40 +0.2 3,621,513 + MPMX20_03432 0.40 +2.0 3,621,521 - MPMX20_03432 0.41 -1.9 3,621,591 + MPMX20_03432 0.49 -2.2 3,621,591 + MPMX20_03432 0.49 -0.8 3,621,591 + MPMX20_03432 0.49 -1.7 3,621,591 + MPMX20_03432 0.49 +1.5 3,621,591 + MPMX20_03432 0.49 +4.3 3,621,591 + MPMX20_03432 0.49 +0.4 3,621,591 + MPMX20_03432 0.49 -2.1 3,621,591 + MPMX20_03432 0.49 +0.8 3,621,591 + MPMX20_03432 0.49 +0.8 3,621,599 - MPMX20_03432 0.50 -1.0 3,621,599 - MPMX20_03432 0.50 +1.7 3,621,599 - MPMX20_03432 0.50 -1.5 3,621,599 - MPMX20_03432 0.50 -0.7 3,621,599 - MPMX20_03432 0.50 +0.8 3,621,599 - MPMX20_03432 0.50 +0.6 3,621,599 - MPMX20_03432 0.50 -1.1 3,621,599 - MPMX20_03432 0.50 +0.0 3,621,599 - MPMX20_03432 0.50 +0.0 3,621,683 - MPMX20_03432 0.60 -0.6 3,621,685 + MPMX20_03432 0.60 -1.6 3,621,685 + MPMX20_03432 0.60 -1.0 3,621,685 + MPMX20_03432 0.60 +1.4 3,621,733 + MPMX20_03432 0.66 +0.2 3,621,855 + MPMX20_03432 0.80 +1.4 3,621,864 - MPMX20_03432 0.81 +0.5 3,621,948 + -0.2 3,621,948 - -2.2 3,621,983 - +1.4 3,621,996 + +1.0 3,622,004 - +1.8 3,622,004 - +1.2 3,622,004 - +0.2 3,622,018 + -0.6 3,622,193 + MPMX20_03433 0.43 -1.7 3,622,208 + MPMX20_03433 0.49 -0.1 3,622,248 + MPMX20_03433 0.64 +3.0 3,622,286 - MPMX20_03433 0.79 -2.5 3,622,286 - MPMX20_03433 0.79 +0.5 3,622,307 + MPMX20_03433 0.87 -0.8
Or see this region's nucleotide sequence