Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02294 and MPMX20_02295 are separated by 699 nucleotides MPMX20_02295 and MPMX20_02296 are separated by 73 nucleotides MPMX20_02296 and MPMX20_02297 overlap by 4 nucleotides
MPMX20_02294: MPMX20_02294 - hypothetical protein, at 2,405,831 to 2,406,391
_02294
MPMX20_02295: MPMX20_02295 - hypothetical protein, at 2,407,091 to 2,407,273
_02295
MPMX20_02296: MPMX20_02296 - hypothetical protein, at 2,407,347 to 2,408,054
_02296
MPMX20_02297: MPMX20_02297 - hypothetical protein, at 2,408,051 to 2,408,632
_02297
Position (kb)
2407
2408 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2406.461 kb on - strand at 2406.465 kb on - strand at 2406.544 kb on - strand at 2406.804 kb on - strand at 2406.805 kb on - strand at 2406.805 kb on - strand at 2406.808 kb on - strand at 2406.818 kb on - strand at 2406.825 kb on - strand at 2406.825 kb on - strand at 2406.835 kb on - strand at 2406.841 kb on - strand at 2406.841 kb on - strand at 2406.984 kb on - strand at 2406.997 kb on + strand at 2407.023 kb on - strand at 2407.227 kb on - strand, within MPMX20_02295 at 2407.251 kb on + strand, within MPMX20_02295 at 2407.256 kb on + strand at 2407.256 kb on + strand at 2407.258 kb on + strand at 2407.258 kb on + strand at 2407.275 kb on + strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.398 kb on - strand at 2407.416 kb on - strand at 2407.416 kb on - strand at 2407.416 kb on - strand at 2407.416 kb on - strand at 2407.416 kb on - strand at 2407.416 kb on - strand at 2407.416 kb on - strand at 2407.430 kb on - strand, within MPMX20_02296 at 2407.433 kb on - strand, within MPMX20_02296 at 2407.462 kb on + strand, within MPMX20_02296 at 2407.464 kb on + strand, within MPMX20_02296 at 2407.464 kb on + strand, within MPMX20_02296 at 2407.464 kb on + strand, within MPMX20_02296 at 2407.464 kb on + strand, within MPMX20_02296 at 2407.472 kb on - strand, within MPMX20_02296 at 2407.472 kb on - strand, within MPMX20_02296 at 2407.472 kb on - strand, within MPMX20_02296 at 2407.472 kb on - strand, within MPMX20_02296 at 2407.518 kb on - strand, within MPMX20_02296 at 2407.526 kb on + strand, within MPMX20_02296 at 2407.526 kb on + strand, within MPMX20_02296 at 2407.526 kb on + strand, within MPMX20_02296 at 2407.528 kb on - strand, within MPMX20_02296 at 2407.534 kb on - strand, within MPMX20_02296 at 2407.534 kb on - strand, within MPMX20_02296 at 2407.544 kb on - strand, within MPMX20_02296 at 2407.577 kb on + strand, within MPMX20_02296 at 2407.585 kb on - strand, within MPMX20_02296 at 2407.667 kb on - strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.706 kb on + strand, within MPMX20_02296 at 2407.714 kb on - strand, within MPMX20_02296 at 2407.714 kb on - strand, within MPMX20_02296 at 2407.714 kb on - strand, within MPMX20_02296 at 2407.720 kb on - strand, within MPMX20_02296 at 2407.772 kb on - strand, within MPMX20_02296 at 2407.822 kb on + strand, within MPMX20_02296 at 2407.832 kb on + strand, within MPMX20_02296 at 2407.832 kb on + strand, within MPMX20_02296 at 2407.832 kb on + strand, within MPMX20_02296 at 2407.837 kb on + strand, within MPMX20_02296 at 2407.837 kb on + strand, within MPMX20_02296 at 2407.840 kb on - strand, within MPMX20_02296 at 2407.840 kb on - strand, within MPMX20_02296 at 2407.841 kb on + strand, within MPMX20_02296 at 2407.841 kb on + strand, within MPMX20_02296 at 2407.845 kb on - strand, within MPMX20_02296 at 2407.915 kb on + strand, within MPMX20_02296 at 2407.915 kb on + strand, within MPMX20_02296 at 2407.915 kb on + strand, within MPMX20_02296 at 2407.923 kb on - strand, within MPMX20_02296 at 2407.930 kb on - strand, within MPMX20_02296 at 2407.938 kb on - strand, within MPMX20_02296 at 2407.940 kb on - strand, within MPMX20_02296 at 2407.953 kb on + strand, within MPMX20_02296 at 2407.970 kb on + strand, within MPMX20_02296 at 2407.998 kb on + strand at 2407.998 kb on + strand at 2407.998 kb on + strand at 2407.998 kb on + strand at 2407.998 kb on + strand at 2408.000 kb on + strand at 2408.000 kb on + strand at 2408.000 kb on + strand at 2408.000 kb on + strand at 2408.000 kb on + strand at 2408.000 kb on + strand at 2408.000 kb on + strand at 2408.006 kb on - strand at 2408.006 kb on - strand at 2408.006 kb on - strand at 2408.006 kb on - strand at 2408.006 kb on - strand at 2408.006 kb on - strand at 2408.006 kb on - strand at 2408.008 kb on - strand at 2408.008 kb on - strand at 2408.008 kb on - strand at 2408.008 kb on - strand at 2408.008 kb on - strand at 2408.008 kb on - strand at 2408.017 kb on + strand at 2408.025 kb on - strand at 2408.025 kb on - strand at 2408.035 kb on + strand at 2408.035 kb on + strand at 2408.035 kb on + strand at 2408.043 kb on - strand at 2408.043 kb on - strand at 2408.043 kb on - strand at 2408.043 kb on - strand at 2408.043 kb on - strand at 2408.043 kb on - strand at 2408.110 kb on - strand, within MPMX20_02297 at 2408.116 kb on + strand, within MPMX20_02297 at 2408.116 kb on + strand, within MPMX20_02297 at 2408.116 kb on + strand, within MPMX20_02297 at 2408.124 kb on - strand, within MPMX20_02297 at 2408.124 kb on - strand, within MPMX20_02297 at 2408.124 kb on - strand, within MPMX20_02297 at 2408.124 kb on - strand, within MPMX20_02297 at 2408.137 kb on + strand, within MPMX20_02297 at 2408.154 kb on + strand, within MPMX20_02297 at 2408.168 kb on - strand, within MPMX20_02297 at 2408.209 kb on + strand, within MPMX20_02297 at 2408.214 kb on + strand, within MPMX20_02297 at 2408.258 kb on + strand, within MPMX20_02297 at 2408.258 kb on + strand, within MPMX20_02297 at 2408.258 kb on + strand, within MPMX20_02297 at 2408.266 kb on - strand, within MPMX20_02297 at 2408.266 kb on - strand, within MPMX20_02297
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 2,406,461 - +1.3 2,406,465 - +0.1 2,406,544 - -1.0 2,406,804 - +1.6 2,406,805 - +2.2 2,406,805 - -2.1 2,406,808 - -2.0 2,406,818 - -1.3 2,406,825 - -1.3 2,406,825 - +0.3 2,406,835 - -1.9 2,406,841 - -1.3 2,406,841 - -1.7 2,406,984 - -2.0 2,406,997 + -2.6 2,407,023 - -2.0 2,407,227 - MPMX20_02295 0.74 -2.5 2,407,251 + MPMX20_02295 0.87 -4.1 2,407,256 + +0.9 2,407,256 + -0.8 2,407,258 + -0.7 2,407,258 + -0.7 2,407,275 + +0.7 2,407,398 - -0.2 2,407,398 - -0.6 2,407,398 - +1.5 2,407,398 - -2.8 2,407,398 - -1.3 2,407,398 - -1.5 2,407,398 - +0.2 2,407,398 - -1.5 2,407,398 - -0.7 2,407,398 - -2.7 2,407,416 - -1.1 2,407,416 - -2.8 2,407,416 - -1.4 2,407,416 - -1.9 2,407,416 - +3.3 2,407,416 - +0.9 2,407,416 - -0.3 2,407,430 - MPMX20_02296 0.12 -1.9 2,407,433 - MPMX20_02296 0.12 -2.0 2,407,462 + MPMX20_02296 0.16 -2.8 2,407,464 + MPMX20_02296 0.17 -2.5 2,407,464 + MPMX20_02296 0.17 -0.5 2,407,464 + MPMX20_02296 0.17 +0.4 2,407,464 + MPMX20_02296 0.17 +0.6 2,407,472 - MPMX20_02296 0.18 -2.0 2,407,472 - MPMX20_02296 0.18 +0.3 2,407,472 - MPMX20_02296 0.18 -2.0 2,407,472 - MPMX20_02296 0.18 +0.1 2,407,518 - MPMX20_02296 0.24 -1.0 2,407,526 + MPMX20_02296 0.25 -0.4 2,407,526 + MPMX20_02296 0.25 +0.4 2,407,526 + MPMX20_02296 0.25 -0.4 2,407,528 - MPMX20_02296 0.26 -2.9 2,407,534 - MPMX20_02296 0.26 -0.1 2,407,534 - MPMX20_02296 0.26 -1.0 2,407,544 - MPMX20_02296 0.28 +1.6 2,407,577 + MPMX20_02296 0.32 +0.5 2,407,585 - MPMX20_02296 0.34 -0.9 2,407,667 - MPMX20_02296 0.45 -1.2 2,407,706 + MPMX20_02296 0.51 -4.2 2,407,706 + MPMX20_02296 0.51 -1.3 2,407,706 + MPMX20_02296 0.51 +0.7 2,407,706 + MPMX20_02296 0.51 -2.1 2,407,706 + MPMX20_02296 0.51 -1.2 2,407,706 + MPMX20_02296 0.51 +0.3 2,407,706 + MPMX20_02296 0.51 +0.2 2,407,706 + MPMX20_02296 0.51 +1.3 2,407,714 - MPMX20_02296 0.52 -0.4 2,407,714 - MPMX20_02296 0.52 -0.4 2,407,714 - MPMX20_02296 0.52 +1.6 2,407,720 - MPMX20_02296 0.53 +0.6 2,407,772 - MPMX20_02296 0.60 -0.4 2,407,822 + MPMX20_02296 0.67 +1.3 2,407,832 + MPMX20_02296 0.69 +0.1 2,407,832 + MPMX20_02296 0.69 +0.7 2,407,832 + MPMX20_02296 0.69 +0.6 2,407,837 + MPMX20_02296 0.69 +1.1 2,407,837 + MPMX20_02296 0.69 +0.6 2,407,840 - MPMX20_02296 0.70 +1.8 2,407,840 - MPMX20_02296 0.70 -2.3 2,407,841 + MPMX20_02296 0.70 +0.1 2,407,841 + MPMX20_02296 0.70 +3.2 2,407,845 - MPMX20_02296 0.70 -2.4 2,407,915 + MPMX20_02296 0.80 -4.4 2,407,915 + MPMX20_02296 0.80 +0.3 2,407,915 + MPMX20_02296 0.80 +1.3 2,407,923 - MPMX20_02296 0.81 -0.1 2,407,930 - MPMX20_02296 0.82 +0.0 2,407,938 - MPMX20_02296 0.83 -1.0 2,407,940 - MPMX20_02296 0.84 -2.4 2,407,953 + MPMX20_02296 0.86 +1.1 2,407,970 + MPMX20_02296 0.88 -4.0 2,407,998 + -2.9 2,407,998 + +0.5 2,407,998 + +0.1 2,407,998 + +1.1 2,407,998 + +0.2 2,408,000 + -0.1 2,408,000 + -0.4 2,408,000 + +0.7 2,408,000 + +3.3 2,408,000 + -1.8 2,408,000 + -2.5 2,408,000 + -1.1 2,408,006 - +0.4 2,408,006 - -2.5 2,408,006 - -2.4 2,408,006 - -0.1 2,408,006 - -1.9 2,408,006 - +1.6 2,408,006 - +0.0 2,408,008 - -0.4 2,408,008 - +0.4 2,408,008 - +2.5 2,408,008 - +1.5 2,408,008 - +1.3 2,408,008 - +0.9 2,408,017 + -0.3 2,408,025 - +2.0 2,408,025 - +1.3 2,408,035 + +2.9 2,408,035 + +2.2 2,408,035 + -0.7 2,408,043 - -0.0 2,408,043 - -1.3 2,408,043 - -1.0 2,408,043 - -0.1 2,408,043 - -0.8 2,408,043 - -2.1 2,408,110 - MPMX20_02297 0.10 -1.0 2,408,116 + MPMX20_02297 0.11 -2.4 2,408,116 + MPMX20_02297 0.11 +1.3 2,408,116 + MPMX20_02297 0.11 +0.7 2,408,124 - MPMX20_02297 0.13 -0.3 2,408,124 - MPMX20_02297 0.13 -3.3 2,408,124 - MPMX20_02297 0.13 -3.5 2,408,124 - MPMX20_02297 0.13 +1.3 2,408,137 + MPMX20_02297 0.15 +1.0 2,408,154 + MPMX20_02297 0.18 -3.0 2,408,168 - MPMX20_02297 0.20 +0.9 2,408,209 + MPMX20_02297 0.27 +0.5 2,408,214 + MPMX20_02297 0.28 -2.9 2,408,258 + MPMX20_02297 0.36 -0.0 2,408,258 + MPMX20_02297 0.36 -1.9 2,408,258 + MPMX20_02297 0.36 -0.5 2,408,266 - MPMX20_02297 0.37 -1.0 2,408,266 - MPMX20_02297 0.37 -2.0
Or see this region's nucleotide sequence