Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04162

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04160 and MPMX20_04161 are separated by 0 nucleotidesMPMX20_04161 and MPMX20_04162 are separated by 234 nucleotidesMPMX20_04162 and MPMX20_04163 are separated by 21 nucleotidesMPMX20_04163 and MPMX20_04164 are separated by 10 nucleotides MPMX20_04160: MPMX20_04160 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,363,822 to 4,364,823 _04160 MPMX20_04161: MPMX20_04161 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 4,364,824 to 4,365,423 _04161 MPMX20_04162: MPMX20_04162 - 3-dehydroquinate dehydratase, at 4,365,658 to 4,366,110 _04162 MPMX20_04163: MPMX20_04163 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 4,366,132 to 4,366,593 _04163 MPMX20_04164: MPMX20_04164 - Biotin carboxylase, at 4,366,604 to 4,367,953 _04164 Position (kb) 4365 4366 4367Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4364.687 kb on + strand, within MPMX20_04160at 4364.752 kb on - strandat 4364.757 kb on - strandat 4364.781 kb on - strandat 4364.842 kb on + strandat 4364.871 kb on - strandat 4364.871 kb on - strandat 4364.871 kb on - strandat 4365.018 kb on - strand, within MPMX20_04161at 4365.023 kb on + strand, within MPMX20_04161at 4365.023 kb on + strand, within MPMX20_04161at 4365.031 kb on - strand, within MPMX20_04161at 4365.077 kb on - strand, within MPMX20_04161at 4365.111 kb on - strand, within MPMX20_04161at 4365.112 kb on - strand, within MPMX20_04161at 4365.142 kb on + strand, within MPMX20_04161at 4365.150 kb on - strand, within MPMX20_04161at 4365.150 kb on - strand, within MPMX20_04161at 4365.159 kb on + strand, within MPMX20_04161at 4365.159 kb on + strand, within MPMX20_04161at 4365.167 kb on - strand, within MPMX20_04161at 4365.195 kb on - strand, within MPMX20_04161at 4365.432 kb on + strandat 4365.774 kb on + strand, within MPMX20_04162at 4365.784 kb on + strand, within MPMX20_04162at 4365.820 kb on + strand, within MPMX20_04162at 4365.837 kb on + strand, within MPMX20_04162at 4365.845 kb on + strand, within MPMX20_04162at 4365.845 kb on + strand, within MPMX20_04162at 4365.856 kb on + strand, within MPMX20_04162at 4365.856 kb on + strand, within MPMX20_04162at 4365.872 kb on + strand, within MPMX20_04162at 4365.877 kb on + strand, within MPMX20_04162at 4365.877 kb on + strand, within MPMX20_04162at 4365.906 kb on + strand, within MPMX20_04162at 4365.906 kb on + strand, within MPMX20_04162at 4365.983 kb on + strand, within MPMX20_04162at 4365.983 kb on + strand, within MPMX20_04162at 4365.983 kb on + strand, within MPMX20_04162

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,364,687 + MPMX20_04160 0.86 +0.5
4,364,752 - +0.2
4,364,757 - +0.1
4,364,781 - +0.5
4,364,842 + +2.2
4,364,871 - +0.2
4,364,871 - +0.2
4,364,871 - -3.0
4,365,018 - MPMX20_04161 0.32 -0.5
4,365,023 + MPMX20_04161 0.33 -1.0
4,365,023 + MPMX20_04161 0.33 +0.8
4,365,031 - MPMX20_04161 0.34 +2.6
4,365,077 - MPMX20_04161 0.42 +0.3
4,365,111 - MPMX20_04161 0.48 +0.7
4,365,112 - MPMX20_04161 0.48 +0.7
4,365,142 + MPMX20_04161 0.53 -0.9
4,365,150 - MPMX20_04161 0.54 +2.1
4,365,150 - MPMX20_04161 0.54 +0.8
4,365,159 + MPMX20_04161 0.56 -0.2
4,365,159 + MPMX20_04161 0.56 -2.5
4,365,167 - MPMX20_04161 0.57 -0.5
4,365,195 - MPMX20_04161 0.62 +1.0
4,365,432 + -1.5
4,365,774 + MPMX20_04162 0.26 -1.6
4,365,784 + MPMX20_04162 0.28 -0.2
4,365,820 + MPMX20_04162 0.36 -3.2
4,365,837 + MPMX20_04162 0.40 -3.3
4,365,845 + MPMX20_04162 0.41 -1.6
4,365,845 + MPMX20_04162 0.41 -3.4
4,365,856 + MPMX20_04162 0.44 -2.8
4,365,856 + MPMX20_04162 0.44 -2.5
4,365,872 + MPMX20_04162 0.47 -0.6
4,365,877 + MPMX20_04162 0.48 -2.5
4,365,877 + MPMX20_04162 0.48 -0.4
4,365,906 + MPMX20_04162 0.55 -0.8
4,365,906 + MPMX20_04162 0.55 -3.0
4,365,983 + MPMX20_04162 0.72 -0.2
4,365,983 + MPMX20_04162 0.72 -1.7
4,365,983 + MPMX20_04162 0.72 -2.5

Or see this region's nucleotide sequence