Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04160 and MPMX20_04161 are separated by 0 nucleotides MPMX20_04161 and MPMX20_04162 are separated by 234 nucleotides MPMX20_04162 and MPMX20_04163 are separated by 21 nucleotides MPMX20_04163 and MPMX20_04164 are separated by 10 nucleotides
MPMX20_04160: MPMX20_04160 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,363,822 to 4,364,823
_04160
MPMX20_04161: MPMX20_04161 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 4,364,824 to 4,365,423
_04161
MPMX20_04162: MPMX20_04162 - 3-dehydroquinate dehydratase, at 4,365,658 to 4,366,110
_04162
MPMX20_04163: MPMX20_04163 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 4,366,132 to 4,366,593
_04163
MPMX20_04164: MPMX20_04164 - Biotin carboxylase, at 4,366,604 to 4,367,953
_04164
Position (kb)
4365
4366
4367 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4364.687 kb on + strand, within MPMX20_04160 at 4364.752 kb on - strand at 4364.757 kb on - strand at 4364.781 kb on - strand at 4364.842 kb on + strand at 4364.871 kb on - strand at 4364.871 kb on - strand at 4364.871 kb on - strand at 4365.018 kb on - strand, within MPMX20_04161 at 4365.023 kb on + strand, within MPMX20_04161 at 4365.023 kb on + strand, within MPMX20_04161 at 4365.031 kb on - strand, within MPMX20_04161 at 4365.077 kb on - strand, within MPMX20_04161 at 4365.111 kb on - strand, within MPMX20_04161 at 4365.112 kb on - strand, within MPMX20_04161 at 4365.142 kb on + strand, within MPMX20_04161 at 4365.150 kb on - strand, within MPMX20_04161 at 4365.150 kb on - strand, within MPMX20_04161 at 4365.159 kb on + strand, within MPMX20_04161 at 4365.159 kb on + strand, within MPMX20_04161 at 4365.167 kb on - strand, within MPMX20_04161 at 4365.195 kb on - strand, within MPMX20_04161 at 4365.432 kb on + strand at 4365.774 kb on + strand, within MPMX20_04162 at 4365.784 kb on + strand, within MPMX20_04162 at 4365.820 kb on + strand, within MPMX20_04162 at 4365.837 kb on + strand, within MPMX20_04162 at 4365.845 kb on + strand, within MPMX20_04162 at 4365.845 kb on + strand, within MPMX20_04162 at 4365.856 kb on + strand, within MPMX20_04162 at 4365.856 kb on + strand, within MPMX20_04162 at 4365.872 kb on + strand, within MPMX20_04162 at 4365.877 kb on + strand, within MPMX20_04162 at 4365.877 kb on + strand, within MPMX20_04162 at 4365.906 kb on + strand, within MPMX20_04162 at 4365.906 kb on + strand, within MPMX20_04162 at 4365.983 kb on + strand, within MPMX20_04162 at 4365.983 kb on + strand, within MPMX20_04162 at 4365.983 kb on + strand, within MPMX20_04162
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,364,687 + MPMX20_04160 0.86 +0.5 4,364,752 - +0.2 4,364,757 - +0.1 4,364,781 - +0.5 4,364,842 + +2.2 4,364,871 - +0.2 4,364,871 - +0.2 4,364,871 - -3.0 4,365,018 - MPMX20_04161 0.32 -0.5 4,365,023 + MPMX20_04161 0.33 -1.0 4,365,023 + MPMX20_04161 0.33 +0.8 4,365,031 - MPMX20_04161 0.34 +2.6 4,365,077 - MPMX20_04161 0.42 +0.3 4,365,111 - MPMX20_04161 0.48 +0.7 4,365,112 - MPMX20_04161 0.48 +0.7 4,365,142 + MPMX20_04161 0.53 -0.9 4,365,150 - MPMX20_04161 0.54 +2.1 4,365,150 - MPMX20_04161 0.54 +0.8 4,365,159 + MPMX20_04161 0.56 -0.2 4,365,159 + MPMX20_04161 0.56 -2.5 4,365,167 - MPMX20_04161 0.57 -0.5 4,365,195 - MPMX20_04161 0.62 +1.0 4,365,432 + -1.5 4,365,774 + MPMX20_04162 0.26 -1.6 4,365,784 + MPMX20_04162 0.28 -0.2 4,365,820 + MPMX20_04162 0.36 -3.2 4,365,837 + MPMX20_04162 0.40 -3.3 4,365,845 + MPMX20_04162 0.41 -1.6 4,365,845 + MPMX20_04162 0.41 -3.4 4,365,856 + MPMX20_04162 0.44 -2.8 4,365,856 + MPMX20_04162 0.44 -2.5 4,365,872 + MPMX20_04162 0.47 -0.6 4,365,877 + MPMX20_04162 0.48 -2.5 4,365,877 + MPMX20_04162 0.48 -0.4 4,365,906 + MPMX20_04162 0.55 -0.8 4,365,906 + MPMX20_04162 0.55 -3.0 4,365,983 + MPMX20_04162 0.72 -0.2 4,365,983 + MPMX20_04162 0.72 -1.7 4,365,983 + MPMX20_04162 0.72 -2.5
Or see this region's nucleotide sequence