Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04158 and MPMX20_04159 are separated by 182 nucleotides MPMX20_04159 and MPMX20_04160 are separated by 77 nucleotides
MPMX20_04158: MPMX20_04158 - RNase E specificity factor CsrD, at 4,360,647 to 4,362,587
_04158
MPMX20_04159: MPMX20_04159 - putative acrylyl-CoA reductase AcuI, at 4,362,770 to 4,363,744
_04159
MPMX20_04160: MPMX20_04160 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,363,822 to 4,364,823
_04160
Position (kb)
4362
4363
4364 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4361.773 kb on - strand, within MPMX20_04158 at 4361.773 kb on - strand, within MPMX20_04158 at 4361.773 kb on - strand, within MPMX20_04158 at 4361.809 kb on - strand, within MPMX20_04158 at 4361.917 kb on + strand, within MPMX20_04158 at 4361.923 kb on + strand, within MPMX20_04158 at 4361.925 kb on - strand, within MPMX20_04158 at 4361.925 kb on - strand, within MPMX20_04158 at 4361.939 kb on + strand, within MPMX20_04158 at 4361.944 kb on + strand, within MPMX20_04158 at 4361.947 kb on - strand, within MPMX20_04158 at 4361.952 kb on - strand, within MPMX20_04158 at 4361.952 kb on - strand, within MPMX20_04158 at 4361.954 kb on + strand, within MPMX20_04158 at 4361.996 kb on - strand, within MPMX20_04158 at 4361.998 kb on + strand, within MPMX20_04158 at 4361.998 kb on + strand, within MPMX20_04158 at 4361.998 kb on + strand, within MPMX20_04158 at 4361.998 kb on + strand, within MPMX20_04158 at 4361.998 kb on + strand, within MPMX20_04158 at 4362.000 kb on + strand, within MPMX20_04158 at 4362.006 kb on - strand, within MPMX20_04158 at 4362.006 kb on - strand, within MPMX20_04158 at 4362.015 kb on - strand, within MPMX20_04158 at 4362.038 kb on + strand, within MPMX20_04158 at 4362.038 kb on + strand, within MPMX20_04158 at 4362.046 kb on - strand, within MPMX20_04158 at 4362.073 kb on + strand, within MPMX20_04158 at 4362.073 kb on + strand, within MPMX20_04158 at 4362.081 kb on - strand, within MPMX20_04158 at 4362.089 kb on - strand, within MPMX20_04158 at 4362.165 kb on + strand, within MPMX20_04158 at 4362.181 kb on - strand, within MPMX20_04158 at 4362.225 kb on - strand, within MPMX20_04158 at 4362.292 kb on + strand, within MPMX20_04158 at 4362.299 kb on + strand, within MPMX20_04158 at 4362.323 kb on + strand, within MPMX20_04158 at 4362.362 kb on + strand, within MPMX20_04158 at 4362.370 kb on - strand, within MPMX20_04158 at 4362.416 kb on + strand at 4362.465 kb on - strand at 4362.488 kb on - strand at 4362.519 kb on - strand at 4362.541 kb on + strand at 4362.560 kb on - strand at 4362.570 kb on - strand at 4362.570 kb on - strand at 4362.609 kb on - strand at 4362.687 kb on - strand at 4362.703 kb on + strand at 4362.703 kb on + strand at 4362.711 kb on - strand at 4362.711 kb on - strand at 4362.716 kb on + strand at 4362.716 kb on + strand at 4362.716 kb on + strand at 4362.724 kb on + strand at 4362.724 kb on - strand at 4362.727 kb on - strand at 4362.747 kb on + strand at 4362.755 kb on - strand at 4362.783 kb on + strand at 4362.783 kb on + strand at 4362.791 kb on - strand at 4362.859 kb on - strand at 4362.912 kb on - strand, within MPMX20_04159 at 4362.919 kb on + strand, within MPMX20_04159 at 4362.919 kb on + strand, within MPMX20_04159 at 4362.919 kb on + strand, within MPMX20_04159 at 4362.919 kb on + strand, within MPMX20_04159 at 4362.972 kb on + strand, within MPMX20_04159 at 4363.023 kb on - strand, within MPMX20_04159 at 4363.041 kb on - strand, within MPMX20_04159 at 4363.112 kb on + strand, within MPMX20_04159 at 4363.120 kb on - strand, within MPMX20_04159 at 4363.170 kb on + strand, within MPMX20_04159 at 4363.236 kb on + strand, within MPMX20_04159 at 4363.251 kb on + strand, within MPMX20_04159 at 4363.264 kb on - strand, within MPMX20_04159 at 4363.306 kb on - strand, within MPMX20_04159 at 4363.320 kb on + strand, within MPMX20_04159 at 4363.331 kb on + strand, within MPMX20_04159 at 4363.381 kb on - strand, within MPMX20_04159 at 4363.399 kb on + strand, within MPMX20_04159 at 4363.404 kb on + strand, within MPMX20_04159 at 4363.407 kb on - strand, within MPMX20_04159 at 4363.412 kb on - strand, within MPMX20_04159 at 4363.521 kb on - strand, within MPMX20_04159 at 4363.526 kb on - strand, within MPMX20_04159 at 4363.530 kb on + strand, within MPMX20_04159 at 4363.530 kb on + strand, within MPMX20_04159 at 4363.538 kb on - strand, within MPMX20_04159 at 4363.538 kb on - strand, within MPMX20_04159 at 4363.538 kb on - strand, within MPMX20_04159 at 4363.538 kb on - strand, within MPMX20_04159 at 4363.545 kb on + strand, within MPMX20_04159 at 4363.553 kb on - strand, within MPMX20_04159 at 4363.633 kb on + strand, within MPMX20_04159 at 4363.704 kb on - strand at 4363.784 kb on - strand at 4363.784 kb on - strand at 4363.867 kb on + strand at 4363.954 kb on - strand, within MPMX20_04160 at 4363.954 kb on - strand, within MPMX20_04160 at 4363.964 kb on + strand, within MPMX20_04160 at 4363.965 kb on + strand, within MPMX20_04160 at 4363.965 kb on + strand, within MPMX20_04160 at 4363.973 kb on - strand, within MPMX20_04160 at 4364.012 kb on + strand, within MPMX20_04160 at 4364.012 kb on + strand, within MPMX20_04160 at 4364.013 kb on - strand, within MPMX20_04160 at 4364.040 kb on - strand, within MPMX20_04160 at 4364.075 kb on + strand, within MPMX20_04160 at 4364.103 kb on + strand, within MPMX20_04160 at 4364.103 kb on + strand, within MPMX20_04160 at 4364.103 kb on + strand, within MPMX20_04160 at 4364.103 kb on + strand, within MPMX20_04160 at 4364.111 kb on - strand, within MPMX20_04160 at 4364.288 kb on - strand, within MPMX20_04160 at 4364.288 kb on - strand, within MPMX20_04160 at 4364.328 kb on - strand, within MPMX20_04160 at 4364.362 kb on + strand, within MPMX20_04160 at 4364.431 kb on + strand, within MPMX20_04160 at 4364.465 kb on + strand, within MPMX20_04160 at 4364.465 kb on + strand, within MPMX20_04160 at 4364.524 kb on + strand, within MPMX20_04160 at 4364.531 kb on + strand, within MPMX20_04160 at 4364.582 kb on + strand, within MPMX20_04160 at 4364.582 kb on + strand, within MPMX20_04160 at 4364.590 kb on - strand, within MPMX20_04160 at 4364.590 kb on - strand, within MPMX20_04160 at 4364.602 kb on + strand, within MPMX20_04160 at 4364.614 kb on + strand, within MPMX20_04160 at 4364.614 kb on + strand, within MPMX20_04160 at 4364.657 kb on + strand, within MPMX20_04160 at 4364.687 kb on + strand, within MPMX20_04160
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,361,773 - MPMX20_04158 0.58 -0.5 4,361,773 - MPMX20_04158 0.58 -0.2 4,361,773 - MPMX20_04158 0.58 -0.7 4,361,809 - MPMX20_04158 0.60 -0.9 4,361,917 + MPMX20_04158 0.65 -0.2 4,361,923 + MPMX20_04158 0.66 +0.3 4,361,925 - MPMX20_04158 0.66 +2.7 4,361,925 - MPMX20_04158 0.66 -1.2 4,361,939 + MPMX20_04158 0.67 +0.1 4,361,944 + MPMX20_04158 0.67 -0.3 4,361,947 - MPMX20_04158 0.67 -0.4 4,361,952 - MPMX20_04158 0.67 -0.8 4,361,952 - MPMX20_04158 0.67 +0.2 4,361,954 + MPMX20_04158 0.67 -0.7 4,361,996 - MPMX20_04158 0.70 -1.1 4,361,998 + MPMX20_04158 0.70 -1.6 4,361,998 + MPMX20_04158 0.70 +1.4 4,361,998 + MPMX20_04158 0.70 -0.7 4,361,998 + MPMX20_04158 0.70 +0.2 4,361,998 + MPMX20_04158 0.70 -0.3 4,362,000 + MPMX20_04158 0.70 -0.4 4,362,006 - MPMX20_04158 0.70 +0.4 4,362,006 - MPMX20_04158 0.70 -1.2 4,362,015 - MPMX20_04158 0.70 -1.0 4,362,038 + MPMX20_04158 0.72 -0.5 4,362,038 + MPMX20_04158 0.72 -1.5 4,362,046 - MPMX20_04158 0.72 -0.8 4,362,073 + MPMX20_04158 0.73 +0.4 4,362,073 + MPMX20_04158 0.73 +0.1 4,362,081 - MPMX20_04158 0.74 +0.5 4,362,089 - MPMX20_04158 0.74 -1.0 4,362,165 + MPMX20_04158 0.78 +0.1 4,362,181 - MPMX20_04158 0.79 -0.8 4,362,225 - MPMX20_04158 0.81 +0.1 4,362,292 + MPMX20_04158 0.85 +0.7 4,362,299 + MPMX20_04158 0.85 +0.2 4,362,323 + MPMX20_04158 0.86 -0.1 4,362,362 + MPMX20_04158 0.88 -0.6 4,362,370 - MPMX20_04158 0.89 +0.4 4,362,416 + +0.1 4,362,465 - -1.3 4,362,488 - -0.1 4,362,519 - -0.7 4,362,541 + +0.2 4,362,560 - -2.0 4,362,570 - -2.5 4,362,570 - -0.5 4,362,609 - -0.4 4,362,687 - +0.7 4,362,703 + -0.6 4,362,703 + -0.7 4,362,711 - +2.2 4,362,711 - +1.0 4,362,716 + -3.5 4,362,716 + -0.1 4,362,716 + -0.6 4,362,724 + +0.1 4,362,724 - +1.5 4,362,727 - +0.4 4,362,747 + +0.2 4,362,755 - +1.2 4,362,783 + -0.7 4,362,783 + -0.1 4,362,791 - +0.7 4,362,859 - +1.5 4,362,912 - MPMX20_04159 0.15 +1.4 4,362,919 + MPMX20_04159 0.15 -0.5 4,362,919 + MPMX20_04159 0.15 +0.9 4,362,919 + MPMX20_04159 0.15 +0.8 4,362,919 + MPMX20_04159 0.15 -1.1 4,362,972 + MPMX20_04159 0.21 -0.1 4,363,023 - MPMX20_04159 0.26 +2.2 4,363,041 - MPMX20_04159 0.28 +0.9 4,363,112 + MPMX20_04159 0.35 -0.4 4,363,120 - MPMX20_04159 0.36 +0.6 4,363,170 + MPMX20_04159 0.41 +0.2 4,363,236 + MPMX20_04159 0.48 +0.2 4,363,251 + MPMX20_04159 0.49 -0.4 4,363,264 - MPMX20_04159 0.51 -0.3 4,363,306 - MPMX20_04159 0.55 +0.0 4,363,320 + MPMX20_04159 0.56 +0.2 4,363,331 + MPMX20_04159 0.58 +0.0 4,363,381 - MPMX20_04159 0.63 +0.2 4,363,399 + MPMX20_04159 0.65 -0.9 4,363,404 + MPMX20_04159 0.65 -1.4 4,363,407 - MPMX20_04159 0.65 -0.3 4,363,412 - MPMX20_04159 0.66 +0.2 4,363,521 - MPMX20_04159 0.77 +2.7 4,363,526 - MPMX20_04159 0.78 -1.6 4,363,530 + MPMX20_04159 0.78 +0.7 4,363,530 + MPMX20_04159 0.78 -0.6 4,363,538 - MPMX20_04159 0.79 -1.3 4,363,538 - MPMX20_04159 0.79 +0.2 4,363,538 - MPMX20_04159 0.79 -0.4 4,363,538 - MPMX20_04159 0.79 +1.1 4,363,545 + MPMX20_04159 0.79 +0.4 4,363,553 - MPMX20_04159 0.80 -0.8 4,363,633 + MPMX20_04159 0.89 -0.1 4,363,704 - +1.0 4,363,784 - +0.1 4,363,784 - +0.6 4,363,867 + -0.2 4,363,954 - MPMX20_04160 0.13 +2.3 4,363,954 - MPMX20_04160 0.13 +1.0 4,363,964 + MPMX20_04160 0.14 -0.3 4,363,965 + MPMX20_04160 0.14 +1.1 4,363,965 + MPMX20_04160 0.14 +0.3 4,363,973 - MPMX20_04160 0.15 +0.0 4,364,012 + MPMX20_04160 0.19 -0.4 4,364,012 + MPMX20_04160 0.19 +0.9 4,364,013 - MPMX20_04160 0.19 -0.5 4,364,040 - MPMX20_04160 0.22 +0.0 4,364,075 + MPMX20_04160 0.25 +2.1 4,364,103 + MPMX20_04160 0.28 -0.7 4,364,103 + MPMX20_04160 0.28 +0.5 4,364,103 + MPMX20_04160 0.28 +2.2 4,364,103 + MPMX20_04160 0.28 -0.1 4,364,111 - MPMX20_04160 0.29 +0.3 4,364,288 - MPMX20_04160 0.47 -1.2 4,364,288 - MPMX20_04160 0.47 +0.6 4,364,328 - MPMX20_04160 0.50 -1.8 4,364,362 + MPMX20_04160 0.54 +1.5 4,364,431 + MPMX20_04160 0.61 +0.6 4,364,465 + MPMX20_04160 0.64 +1.6 4,364,465 + MPMX20_04160 0.64 +0.1 4,364,524 + MPMX20_04160 0.70 +0.4 4,364,531 + MPMX20_04160 0.71 +1.8 4,364,582 + MPMX20_04160 0.76 +0.9 4,364,582 + MPMX20_04160 0.76 +0.4 4,364,590 - MPMX20_04160 0.77 -1.2 4,364,590 - MPMX20_04160 0.77 +2.2 4,364,602 + MPMX20_04160 0.78 -1.8 4,364,614 + MPMX20_04160 0.79 +0.1 4,364,614 + MPMX20_04160 0.79 -1.6 4,364,657 + MPMX20_04160 0.83 +0.1 4,364,687 + MPMX20_04160 0.86 +0.5
Or see this region's nucleotide sequence