Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04159

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04158 and MPMX20_04159 are separated by 182 nucleotidesMPMX20_04159 and MPMX20_04160 are separated by 77 nucleotides MPMX20_04158: MPMX20_04158 - RNase E specificity factor CsrD, at 4,360,647 to 4,362,587 _04158 MPMX20_04159: MPMX20_04159 - putative acrylyl-CoA reductase AcuI, at 4,362,770 to 4,363,744 _04159 MPMX20_04160: MPMX20_04160 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,363,822 to 4,364,823 _04160 Position (kb) 4362 4363 4364Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4361.773 kb on - strand, within MPMX20_04158at 4361.773 kb on - strand, within MPMX20_04158at 4361.773 kb on - strand, within MPMX20_04158at 4361.809 kb on - strand, within MPMX20_04158at 4361.917 kb on + strand, within MPMX20_04158at 4361.923 kb on + strand, within MPMX20_04158at 4361.925 kb on - strand, within MPMX20_04158at 4361.925 kb on - strand, within MPMX20_04158at 4361.939 kb on + strand, within MPMX20_04158at 4361.944 kb on + strand, within MPMX20_04158at 4361.947 kb on - strand, within MPMX20_04158at 4361.952 kb on - strand, within MPMX20_04158at 4361.952 kb on - strand, within MPMX20_04158at 4361.954 kb on + strand, within MPMX20_04158at 4361.996 kb on - strand, within MPMX20_04158at 4361.998 kb on + strand, within MPMX20_04158at 4361.998 kb on + strand, within MPMX20_04158at 4361.998 kb on + strand, within MPMX20_04158at 4361.998 kb on + strand, within MPMX20_04158at 4361.998 kb on + strand, within MPMX20_04158at 4362.000 kb on + strand, within MPMX20_04158at 4362.006 kb on - strand, within MPMX20_04158at 4362.006 kb on - strand, within MPMX20_04158at 4362.015 kb on - strand, within MPMX20_04158at 4362.038 kb on + strand, within MPMX20_04158at 4362.038 kb on + strand, within MPMX20_04158at 4362.046 kb on - strand, within MPMX20_04158at 4362.073 kb on + strand, within MPMX20_04158at 4362.073 kb on + strand, within MPMX20_04158at 4362.081 kb on - strand, within MPMX20_04158at 4362.089 kb on - strand, within MPMX20_04158at 4362.165 kb on + strand, within MPMX20_04158at 4362.181 kb on - strand, within MPMX20_04158at 4362.225 kb on - strand, within MPMX20_04158at 4362.292 kb on + strand, within MPMX20_04158at 4362.299 kb on + strand, within MPMX20_04158at 4362.323 kb on + strand, within MPMX20_04158at 4362.362 kb on + strand, within MPMX20_04158at 4362.370 kb on - strand, within MPMX20_04158at 4362.416 kb on + strandat 4362.465 kb on - strandat 4362.488 kb on - strandat 4362.519 kb on - strandat 4362.541 kb on + strandat 4362.560 kb on - strandat 4362.570 kb on - strandat 4362.570 kb on - strandat 4362.609 kb on - strandat 4362.687 kb on - strandat 4362.703 kb on + strandat 4362.703 kb on + strandat 4362.711 kb on - strandat 4362.711 kb on - strandat 4362.716 kb on + strandat 4362.716 kb on + strandat 4362.716 kb on + strandat 4362.724 kb on + strandat 4362.724 kb on - strandat 4362.727 kb on - strandat 4362.747 kb on + strandat 4362.755 kb on - strandat 4362.783 kb on + strandat 4362.783 kb on + strandat 4362.791 kb on - strandat 4362.859 kb on - strandat 4362.912 kb on - strand, within MPMX20_04159at 4362.919 kb on + strand, within MPMX20_04159at 4362.919 kb on + strand, within MPMX20_04159at 4362.919 kb on + strand, within MPMX20_04159at 4362.919 kb on + strand, within MPMX20_04159at 4362.972 kb on + strand, within MPMX20_04159at 4363.023 kb on - strand, within MPMX20_04159at 4363.041 kb on - strand, within MPMX20_04159at 4363.112 kb on + strand, within MPMX20_04159at 4363.120 kb on - strand, within MPMX20_04159at 4363.170 kb on + strand, within MPMX20_04159at 4363.236 kb on + strand, within MPMX20_04159at 4363.251 kb on + strand, within MPMX20_04159at 4363.264 kb on - strand, within MPMX20_04159at 4363.306 kb on - strand, within MPMX20_04159at 4363.320 kb on + strand, within MPMX20_04159at 4363.331 kb on + strand, within MPMX20_04159at 4363.381 kb on - strand, within MPMX20_04159at 4363.399 kb on + strand, within MPMX20_04159at 4363.404 kb on + strand, within MPMX20_04159at 4363.407 kb on - strand, within MPMX20_04159at 4363.412 kb on - strand, within MPMX20_04159at 4363.521 kb on - strand, within MPMX20_04159at 4363.526 kb on - strand, within MPMX20_04159at 4363.530 kb on + strand, within MPMX20_04159at 4363.530 kb on + strand, within MPMX20_04159at 4363.538 kb on - strand, within MPMX20_04159at 4363.538 kb on - strand, within MPMX20_04159at 4363.538 kb on - strand, within MPMX20_04159at 4363.538 kb on - strand, within MPMX20_04159at 4363.545 kb on + strand, within MPMX20_04159at 4363.553 kb on - strand, within MPMX20_04159at 4363.633 kb on + strand, within MPMX20_04159at 4363.704 kb on - strandat 4363.784 kb on - strandat 4363.784 kb on - strandat 4363.867 kb on + strandat 4363.954 kb on - strand, within MPMX20_04160at 4363.954 kb on - strand, within MPMX20_04160at 4363.964 kb on + strand, within MPMX20_04160at 4363.965 kb on + strand, within MPMX20_04160at 4363.965 kb on + strand, within MPMX20_04160at 4363.973 kb on - strand, within MPMX20_04160at 4364.012 kb on + strand, within MPMX20_04160at 4364.012 kb on + strand, within MPMX20_04160at 4364.013 kb on - strand, within MPMX20_04160at 4364.040 kb on - strand, within MPMX20_04160at 4364.075 kb on + strand, within MPMX20_04160at 4364.103 kb on + strand, within MPMX20_04160at 4364.103 kb on + strand, within MPMX20_04160at 4364.103 kb on + strand, within MPMX20_04160at 4364.103 kb on + strand, within MPMX20_04160at 4364.111 kb on - strand, within MPMX20_04160at 4364.288 kb on - strand, within MPMX20_04160at 4364.288 kb on - strand, within MPMX20_04160at 4364.328 kb on - strand, within MPMX20_04160at 4364.362 kb on + strand, within MPMX20_04160at 4364.431 kb on + strand, within MPMX20_04160at 4364.465 kb on + strand, within MPMX20_04160at 4364.465 kb on + strand, within MPMX20_04160at 4364.524 kb on + strand, within MPMX20_04160at 4364.531 kb on + strand, within MPMX20_04160at 4364.582 kb on + strand, within MPMX20_04160at 4364.582 kb on + strand, within MPMX20_04160at 4364.590 kb on - strand, within MPMX20_04160at 4364.590 kb on - strand, within MPMX20_04160at 4364.602 kb on + strand, within MPMX20_04160at 4364.614 kb on + strand, within MPMX20_04160at 4364.614 kb on + strand, within MPMX20_04160at 4364.657 kb on + strand, within MPMX20_04160at 4364.687 kb on + strand, within MPMX20_04160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,361,773 - MPMX20_04158 0.58 -0.5
4,361,773 - MPMX20_04158 0.58 -0.2
4,361,773 - MPMX20_04158 0.58 -0.7
4,361,809 - MPMX20_04158 0.60 -0.9
4,361,917 + MPMX20_04158 0.65 -0.2
4,361,923 + MPMX20_04158 0.66 +0.3
4,361,925 - MPMX20_04158 0.66 +2.7
4,361,925 - MPMX20_04158 0.66 -1.2
4,361,939 + MPMX20_04158 0.67 +0.1
4,361,944 + MPMX20_04158 0.67 -0.3
4,361,947 - MPMX20_04158 0.67 -0.4
4,361,952 - MPMX20_04158 0.67 -0.8
4,361,952 - MPMX20_04158 0.67 +0.2
4,361,954 + MPMX20_04158 0.67 -0.7
4,361,996 - MPMX20_04158 0.70 -1.1
4,361,998 + MPMX20_04158 0.70 -1.6
4,361,998 + MPMX20_04158 0.70 +1.4
4,361,998 + MPMX20_04158 0.70 -0.7
4,361,998 + MPMX20_04158 0.70 +0.2
4,361,998 + MPMX20_04158 0.70 -0.3
4,362,000 + MPMX20_04158 0.70 -0.4
4,362,006 - MPMX20_04158 0.70 +0.4
4,362,006 - MPMX20_04158 0.70 -1.2
4,362,015 - MPMX20_04158 0.70 -1.0
4,362,038 + MPMX20_04158 0.72 -0.5
4,362,038 + MPMX20_04158 0.72 -1.5
4,362,046 - MPMX20_04158 0.72 -0.8
4,362,073 + MPMX20_04158 0.73 +0.4
4,362,073 + MPMX20_04158 0.73 +0.1
4,362,081 - MPMX20_04158 0.74 +0.5
4,362,089 - MPMX20_04158 0.74 -1.0
4,362,165 + MPMX20_04158 0.78 +0.1
4,362,181 - MPMX20_04158 0.79 -0.8
4,362,225 - MPMX20_04158 0.81 +0.1
4,362,292 + MPMX20_04158 0.85 +0.7
4,362,299 + MPMX20_04158 0.85 +0.2
4,362,323 + MPMX20_04158 0.86 -0.1
4,362,362 + MPMX20_04158 0.88 -0.6
4,362,370 - MPMX20_04158 0.89 +0.4
4,362,416 + +0.1
4,362,465 - -1.3
4,362,488 - -0.1
4,362,519 - -0.7
4,362,541 + +0.2
4,362,560 - -2.0
4,362,570 - -2.5
4,362,570 - -0.5
4,362,609 - -0.4
4,362,687 - +0.7
4,362,703 + -0.6
4,362,703 + -0.7
4,362,711 - +2.2
4,362,711 - +1.0
4,362,716 + -3.5
4,362,716 + -0.1
4,362,716 + -0.6
4,362,724 + +0.1
4,362,724 - +1.5
4,362,727 - +0.4
4,362,747 + +0.2
4,362,755 - +1.2
4,362,783 + -0.7
4,362,783 + -0.1
4,362,791 - +0.7
4,362,859 - +1.5
4,362,912 - MPMX20_04159 0.15 +1.4
4,362,919 + MPMX20_04159 0.15 -0.5
4,362,919 + MPMX20_04159 0.15 +0.9
4,362,919 + MPMX20_04159 0.15 +0.8
4,362,919 + MPMX20_04159 0.15 -1.1
4,362,972 + MPMX20_04159 0.21 -0.1
4,363,023 - MPMX20_04159 0.26 +2.2
4,363,041 - MPMX20_04159 0.28 +0.9
4,363,112 + MPMX20_04159 0.35 -0.4
4,363,120 - MPMX20_04159 0.36 +0.6
4,363,170 + MPMX20_04159 0.41 +0.2
4,363,236 + MPMX20_04159 0.48 +0.2
4,363,251 + MPMX20_04159 0.49 -0.4
4,363,264 - MPMX20_04159 0.51 -0.3
4,363,306 - MPMX20_04159 0.55 +0.0
4,363,320 + MPMX20_04159 0.56 +0.2
4,363,331 + MPMX20_04159 0.58 +0.0
4,363,381 - MPMX20_04159 0.63 +0.2
4,363,399 + MPMX20_04159 0.65 -0.9
4,363,404 + MPMX20_04159 0.65 -1.4
4,363,407 - MPMX20_04159 0.65 -0.3
4,363,412 - MPMX20_04159 0.66 +0.2
4,363,521 - MPMX20_04159 0.77 +2.7
4,363,526 - MPMX20_04159 0.78 -1.6
4,363,530 + MPMX20_04159 0.78 +0.7
4,363,530 + MPMX20_04159 0.78 -0.6
4,363,538 - MPMX20_04159 0.79 -1.3
4,363,538 - MPMX20_04159 0.79 +0.2
4,363,538 - MPMX20_04159 0.79 -0.4
4,363,538 - MPMX20_04159 0.79 +1.1
4,363,545 + MPMX20_04159 0.79 +0.4
4,363,553 - MPMX20_04159 0.80 -0.8
4,363,633 + MPMX20_04159 0.89 -0.1
4,363,704 - +1.0
4,363,784 - +0.1
4,363,784 - +0.6
4,363,867 + -0.2
4,363,954 - MPMX20_04160 0.13 +2.3
4,363,954 - MPMX20_04160 0.13 +1.0
4,363,964 + MPMX20_04160 0.14 -0.3
4,363,965 + MPMX20_04160 0.14 +1.1
4,363,965 + MPMX20_04160 0.14 +0.3
4,363,973 - MPMX20_04160 0.15 +0.0
4,364,012 + MPMX20_04160 0.19 -0.4
4,364,012 + MPMX20_04160 0.19 +0.9
4,364,013 - MPMX20_04160 0.19 -0.5
4,364,040 - MPMX20_04160 0.22 +0.0
4,364,075 + MPMX20_04160 0.25 +2.1
4,364,103 + MPMX20_04160 0.28 -0.7
4,364,103 + MPMX20_04160 0.28 +0.5
4,364,103 + MPMX20_04160 0.28 +2.2
4,364,103 + MPMX20_04160 0.28 -0.1
4,364,111 - MPMX20_04160 0.29 +0.3
4,364,288 - MPMX20_04160 0.47 -1.2
4,364,288 - MPMX20_04160 0.47 +0.6
4,364,328 - MPMX20_04160 0.50 -1.8
4,364,362 + MPMX20_04160 0.54 +1.5
4,364,431 + MPMX20_04160 0.61 +0.6
4,364,465 + MPMX20_04160 0.64 +1.6
4,364,465 + MPMX20_04160 0.64 +0.1
4,364,524 + MPMX20_04160 0.70 +0.4
4,364,531 + MPMX20_04160 0.71 +1.8
4,364,582 + MPMX20_04160 0.76 +0.9
4,364,582 + MPMX20_04160 0.76 +0.4
4,364,590 - MPMX20_04160 0.77 -1.2
4,364,590 - MPMX20_04160 0.77 +2.2
4,364,602 + MPMX20_04160 0.78 -1.8
4,364,614 + MPMX20_04160 0.79 +0.1
4,364,614 + MPMX20_04160 0.79 -1.6
4,364,657 + MPMX20_04160 0.83 +0.1
4,364,687 + MPMX20_04160 0.86 +0.5

Or see this region's nucleotide sequence