Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03129

Experiment: Sucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03128 and MPMX20_03129 are separated by 99 nucleotidesMPMX20_03129 and MPMX20_03130 are separated by 64 nucleotidesMPMX20_03130 and MPMX20_03131 are separated by 47 nucleotides MPMX20_03128: MPMX20_03128 - HTH-type transcriptional activator CmpR, at 3,287,069 to 3,287,935 _03128 MPMX20_03129: MPMX20_03129 - hypothetical protein, at 3,288,035 to 3,289,081 _03129 MPMX20_03130: MPMX20_03130 - Endonuclease 4, at 3,289,146 to 3,290,003 _03130 MPMX20_03131: MPMX20_03131 - PTS system fructose-specific EIIB'BC component, at 3,290,051 to 3,291,733 _03131 Position (kb) 3288 3289 3290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3287.046 kb on + strandat 3287.054 kb on - strandat 3287.054 kb on - strandat 3287.054 kb on - strandat 3287.136 kb on - strandat 3287.154 kb on + strandat 3287.201 kb on - strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.282 kb on - strand, within MPMX20_03128at 3287.284 kb on + strand, within MPMX20_03128at 3287.292 kb on - strand, within MPMX20_03128at 3287.292 kb on - strand, within MPMX20_03128at 3287.311 kb on + strand, within MPMX20_03128at 3287.313 kb on + strand, within MPMX20_03128at 3287.354 kb on + strand, within MPMX20_03128at 3287.354 kb on + strand, within MPMX20_03128at 3287.359 kb on + strand, within MPMX20_03128at 3287.386 kb on - strand, within MPMX20_03128at 3287.500 kb on - strand, within MPMX20_03128at 3287.556 kb on - strand, within MPMX20_03128at 3287.557 kb on - strand, within MPMX20_03128at 3287.723 kb on - strand, within MPMX20_03128at 3287.791 kb on + strand, within MPMX20_03128at 3287.819 kb on + strand, within MPMX20_03128at 3287.824 kb on + strand, within MPMX20_03128at 3287.849 kb on - strandat 3287.849 kb on - strandat 3287.849 kb on - strandat 3287.930 kb on - strandat 3288.036 kb on + strandat 3288.097 kb on - strandat 3288.112 kb on - strandat 3288.140 kb on - strand, within MPMX20_03129at 3288.166 kb on - strand, within MPMX20_03129at 3288.168 kb on + strand, within MPMX20_03129at 3288.175 kb on - strand, within MPMX20_03129at 3288.282 kb on + strand, within MPMX20_03129at 3288.290 kb on - strand, within MPMX20_03129at 3288.302 kb on + strand, within MPMX20_03129at 3288.302 kb on + strand, within MPMX20_03129at 3288.302 kb on + strand, within MPMX20_03129at 3288.310 kb on - strand, within MPMX20_03129at 3288.383 kb on - strand, within MPMX20_03129at 3288.407 kb on + strand, within MPMX20_03129at 3288.478 kb on + strand, within MPMX20_03129at 3288.504 kb on - strand, within MPMX20_03129at 3288.578 kb on + strand, within MPMX20_03129at 3288.603 kb on + strand, within MPMX20_03129at 3288.607 kb on - strand, within MPMX20_03129at 3288.611 kb on - strand, within MPMX20_03129at 3288.611 kb on - strand, within MPMX20_03129at 3288.669 kb on - strand, within MPMX20_03129at 3288.681 kb on + strand, within MPMX20_03129at 3288.737 kb on + strand, within MPMX20_03129at 3288.740 kb on - strand, within MPMX20_03129at 3288.742 kb on + strand, within MPMX20_03129at 3288.829 kb on - strand, within MPMX20_03129at 3288.865 kb on - strand, within MPMX20_03129at 3288.865 kb on - strand, within MPMX20_03129at 3288.867 kb on - strand, within MPMX20_03129at 3288.888 kb on - strand, within MPMX20_03129at 3288.964 kb on + strand, within MPMX20_03129at 3288.972 kb on - strand, within MPMX20_03129at 3289.016 kb on + strandat 3289.024 kb on - strandat 3289.061 kb on + strandat 3289.061 kb on + strandat 3289.061 kb on + strandat 3289.061 kb on + strandat 3289.066 kb on - strandat 3289.069 kb on - strandat 3289.161 kb on - strandat 3289.164 kb on + strandat 3289.174 kb on - strandat 3289.174 kb on - strandat 3289.174 kb on - strandat 3289.174 kb on - strandat 3289.174 kb on - strandat 3289.269 kb on + strand, within MPMX20_03130at 3289.277 kb on - strand, within MPMX20_03130at 3289.277 kb on - strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.279 kb on + strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.287 kb on - strand, within MPMX20_03130at 3289.547 kb on + strand, within MPMX20_03130at 3289.547 kb on + strand, within MPMX20_03130at 3289.595 kb on + strand, within MPMX20_03130at 3289.687 kb on + strand, within MPMX20_03130at 3289.720 kb on + strand, within MPMX20_03130at 3289.728 kb on - strand, within MPMX20_03130at 3289.948 kb on + strandat 3289.951 kb on - strandat 3289.951 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
remove
3,287,046 + +0.4
3,287,054 - +0.2
3,287,054 - +0.3
3,287,054 - +1.5
3,287,136 - -1.0
3,287,154 + -0.8
3,287,201 - MPMX20_03128 0.15 -1.9
3,287,242 + MPMX20_03128 0.20 -1.5
3,287,242 + MPMX20_03128 0.20 -1.6
3,287,242 + MPMX20_03128 0.20 -1.0
3,287,250 - MPMX20_03128 0.21 -2.6
3,287,250 - MPMX20_03128 0.21 -0.5
3,287,250 - MPMX20_03128 0.21 -0.6
3,287,282 - MPMX20_03128 0.25 -2.7
3,287,284 + MPMX20_03128 0.25 -1.2
3,287,292 - MPMX20_03128 0.26 -0.6
3,287,292 - MPMX20_03128 0.26 -0.9
3,287,311 + MPMX20_03128 0.28 -0.9
3,287,313 + MPMX20_03128 0.28 -2.3
3,287,354 + MPMX20_03128 0.33 -0.7
3,287,354 + MPMX20_03128 0.33 -0.2
3,287,359 + MPMX20_03128 0.33 -0.6
3,287,386 - MPMX20_03128 0.37 -0.6
3,287,500 - MPMX20_03128 0.50 -1.9
3,287,556 - MPMX20_03128 0.56 -1.5
3,287,557 - MPMX20_03128 0.56 -0.6
3,287,723 - MPMX20_03128 0.75 -1.5
3,287,791 + MPMX20_03128 0.83 -0.3
3,287,819 + MPMX20_03128 0.87 -0.6
3,287,824 + MPMX20_03128 0.87 -3.4
3,287,849 - -0.5
3,287,849 - -0.5
3,287,849 - +0.1
3,287,930 - -2.9
3,288,036 + -0.4
3,288,097 - +0.1
3,288,112 - -0.5
3,288,140 - MPMX20_03129 0.10 +0.7
3,288,166 - MPMX20_03129 0.13 -0.4
3,288,168 + MPMX20_03129 0.13 +0.4
3,288,175 - MPMX20_03129 0.13 +0.3
3,288,282 + MPMX20_03129 0.24 -0.7
3,288,290 - MPMX20_03129 0.24 +0.2
3,288,302 + MPMX20_03129 0.26 -0.1
3,288,302 + MPMX20_03129 0.26 +1.3
3,288,302 + MPMX20_03129 0.26 -0.7
3,288,310 - MPMX20_03129 0.26 -0.1
3,288,383 - MPMX20_03129 0.33 -1.3
3,288,407 + MPMX20_03129 0.36 -0.8
3,288,478 + MPMX20_03129 0.42 -1.4
3,288,504 - MPMX20_03129 0.45 -1.5
3,288,578 + MPMX20_03129 0.52 +0.3
3,288,603 + MPMX20_03129 0.54 -0.8
3,288,607 - MPMX20_03129 0.55 +0.1
3,288,611 - MPMX20_03129 0.55 -0.7
3,288,611 - MPMX20_03129 0.55 +0.3
3,288,669 - MPMX20_03129 0.61 +0.6
3,288,681 + MPMX20_03129 0.62 +0.1
3,288,737 + MPMX20_03129 0.67 +0.2
3,288,740 - MPMX20_03129 0.67 +0.8
3,288,742 + MPMX20_03129 0.68 -0.1
3,288,829 - MPMX20_03129 0.76 +1.6
3,288,865 - MPMX20_03129 0.79 -0.0
3,288,865 - MPMX20_03129 0.79 -0.0
3,288,867 - MPMX20_03129 0.79 -0.3
3,288,888 - MPMX20_03129 0.81 +0.0
3,288,964 + MPMX20_03129 0.89 -0.1
3,288,972 - MPMX20_03129 0.89 -0.0
3,289,016 + -1.5
3,289,024 - +0.6
3,289,061 + -0.1
3,289,061 + -0.5
3,289,061 + -2.0
3,289,061 + +0.3
3,289,066 - +0.8
3,289,069 - +0.1
3,289,161 - -0.7
3,289,164 + -0.2
3,289,174 - +2.1
3,289,174 - -0.5
3,289,174 - -0.9
3,289,174 - +0.2
3,289,174 - -0.7
3,289,269 + MPMX20_03130 0.14 +1.3
3,289,277 - MPMX20_03130 0.15 -0.2
3,289,277 - MPMX20_03130 0.15 -1.5
3,289,279 + MPMX20_03130 0.16 -1.9
3,289,279 + MPMX20_03130 0.16 +2.2
3,289,279 + MPMX20_03130 0.16 +2.8
3,289,279 + MPMX20_03130 0.16 +2.1
3,289,279 + MPMX20_03130 0.16 -0.6
3,289,279 + MPMX20_03130 0.16 +0.1
3,289,279 + MPMX20_03130 0.16 -0.6
3,289,279 + MPMX20_03130 0.16 -0.3
3,289,279 + MPMX20_03130 0.16 -0.2
3,289,279 + MPMX20_03130 0.16 -0.3
3,289,279 + MPMX20_03130 0.16 +0.4
3,289,279 + MPMX20_03130 0.16 -1.2
3,289,279 + MPMX20_03130 0.16 +0.2
3,289,279 + MPMX20_03130 0.16 +0.0
3,289,287 - MPMX20_03130 0.16 -0.3
3,289,287 - MPMX20_03130 0.16 -0.5
3,289,287 - MPMX20_03130 0.16 -0.5
3,289,287 - MPMX20_03130 0.16 -0.3
3,289,287 - MPMX20_03130 0.16 +0.1
3,289,287 - MPMX20_03130 0.16 -0.8
3,289,287 - MPMX20_03130 0.16 +0.0
3,289,287 - MPMX20_03130 0.16 -0.3
3,289,287 - MPMX20_03130 0.16 -0.1
3,289,287 - MPMX20_03130 0.16 +0.4
3,289,287 - MPMX20_03130 0.16 +1.0
3,289,287 - MPMX20_03130 0.16 -0.5
3,289,287 - MPMX20_03130 0.16 +2.6
3,289,287 - MPMX20_03130 0.16 +1.0
3,289,547 + MPMX20_03130 0.47 -0.7
3,289,547 + MPMX20_03130 0.47 -0.0
3,289,595 + MPMX20_03130 0.52 +1.7
3,289,687 + MPMX20_03130 0.63 +0.1
3,289,720 + MPMX20_03130 0.67 -0.5
3,289,728 - MPMX20_03130 0.68 -0.5
3,289,948 + -0.5
3,289,951 - -0.3
3,289,951 - +0.5

Or see this region's nucleotide sequence