Experiment: H2 no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01745 and MMJJ_RS01750 are separated by 111 nucleotides MMJJ_RS01750 and MMJJ_RS09260 are separated by 114 nucleotides MMJJ_RS09260 and MMJJ_RS01755 are separated by 15 nucleotides MMJJ_RS01755 and MMJJ_RS01760 are separated by 94 nucleotides MMJJ_RS01760 and MMJJ_RS01765 are separated by 101 nucleotides
MMJJ_RS01745: MMJJ_RS01745 - metal-dependent transcriptional regulator, at 338,240 to 338,645
_RS01745
MMJJ_RS01750: MMJJ_RS01750 - ferrous iron transport protein A, at 338,757 to 338,963
_RS01750
MMJJ_RS09260: MMJJ_RS09260 - hypothetical protein, at 339,078 to 339,215
_RS09260
MMJJ_RS01755: MMJJ_RS01755 - ferrous iron transport protein B, at 339,231 to 341,174
_RS01755
MMJJ_RS01760: MMJJ_RS01760 - N-acetyltransferase, at 341,269 to 341,877
_RS01760
MMJJ_RS01765: MMJJ_RS01765 - winged helix-turn-helix domain-containing protein, at 341,979 to 342,377
_RS01765
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 338.234 kb on - strand at 338.234 kb on - strand at 338.235 kb on + strand at 338.239 kb on + strand at 338.289 kb on + strand, within MMJJ_RS01745 at 338.298 kb on - strand, within MMJJ_RS01745 at 338.301 kb on + strand, within MMJJ_RS01745 at 338.324 kb on - strand, within MMJJ_RS01745 at 338.324 kb on - strand, within MMJJ_RS01745 at 338.337 kb on + strand, within MMJJ_RS01745 at 338.341 kb on - strand, within MMJJ_RS01745 at 338.341 kb on - strand, within MMJJ_RS01745 at 338.342 kb on + strand, within MMJJ_RS01745 at 338.473 kb on - strand, within MMJJ_RS01745 at 338.482 kb on - strand, within MMJJ_RS01745 at 338.586 kb on + strand, within MMJJ_RS01745 at 338.601 kb on - strand, within MMJJ_RS01745 at 338.620 kb on - strand at 338.630 kb on - strand at 338.631 kb on + strand at 338.666 kb on - strand at 338.666 kb on - strand at 338.667 kb on + strand at 338.667 kb on + strand at 338.668 kb on - strand at 338.668 kb on - strand at 338.668 kb on - strand at 338.668 kb on - strand at 338.668 kb on - strand at 338.669 kb on + strand at 338.669 kb on + strand at 338.669 kb on + strand at 338.669 kb on + strand at 338.669 kb on + strand at 338.670 kb on - strand at 338.671 kb on + strand at 338.673 kb on + strand at 338.737 kb on - strand at 338.740 kb on + strand at 338.741 kb on - strand at 338.791 kb on + strand, within MMJJ_RS01750 at 338.792 kb on - strand, within MMJJ_RS01750 at 338.793 kb on + strand, within MMJJ_RS01750 at 338.797 kb on - strand, within MMJJ_RS01750 at 338.869 kb on - strand, within MMJJ_RS01750 at 338.894 kb on + strand, within MMJJ_RS01750 at 338.956 kb on - strand at 338.962 kb on + strand at 338.962 kb on + strand at 338.983 kb on - strand at 338.992 kb on + strand at 338.994 kb on + strand at 338.994 kb on + strand at 338.999 kb on + strand at 338.999 kb on + strand at 338.999 kb on + strand at 338.999 kb on + strand at 338.999 kb on + strand at 338.999 kb on + strand at 338.999 kb on + strand at 339.003 kb on - strand at 339.018 kb on + strand at 339.046 kb on + strand at 339.115 kb on - strand, within MMJJ_RS09260 at 339.285 kb on + strand at 339.388 kb on + strand at 339.538 kb on - strand, within MMJJ_RS01755 at 340.096 kb on - strand, within MMJJ_RS01755 at 340.170 kb on + strand, within MMJJ_RS01755 at 340.337 kb on + strand, within MMJJ_RS01755 at 340.492 kb on - strand, within MMJJ_RS01755 at 340.629 kb on - strand, within MMJJ_RS01755 at 340.955 kb on + strand, within MMJJ_RS01755 at 341.031 kb on + strand at 341.059 kb on - strand at 341.145 kb on - strand at 341.146 kb on + strand at 341.242 kb on - strand at 341.242 kb on - strand at 341.242 kb on - strand at 341.245 kb on - strand at 341.245 kb on - strand at 341.245 kb on - strand at 341.246 kb on + strand at 341.246 kb on + strand at 341.247 kb on - strand at 341.247 kb on - strand at 341.247 kb on - strand at 341.247 kb on - strand at 341.248 kb on + strand at 341.250 kb on - strand at 341.250 kb on - strand at 341.251 kb on + strand at 341.252 kb on - strand at 341.252 kb on - strand at 341.252 kb on - strand at 341.252 kb on - strand at 341.253 kb on + strand at 341.253 kb on + strand at 341.253 kb on + strand at 341.253 kb on + strand at 341.264 kb on - strand at 341.265 kb on + strand at 341.265 kb on + strand at 341.265 kb on + strand at 341.275 kb on + strand at 341.275 kb on + strand at 341.276 kb on - strand at 341.276 kb on - strand at 341.277 kb on + strand at 341.296 kb on + strand at 341.308 kb on + strand at 341.322 kb on - strand at 341.348 kb on - strand, within MMJJ_RS01760 at 341.349 kb on + strand, within MMJJ_RS01760 at 341.349 kb on + strand, within MMJJ_RS01760 at 341.349 kb on + strand, within MMJJ_RS01760 at 341.349 kb on + strand, within MMJJ_RS01760 at 341.375 kb on - strand, within MMJJ_RS01760 at 341.428 kb on + strand, within MMJJ_RS01760 at 341.461 kb on + strand, within MMJJ_RS01760 at 341.463 kb on - strand, within MMJJ_RS01760 at 341.464 kb on + strand, within MMJJ_RS01760 at 341.467 kb on - strand, within MMJJ_RS01760 at 341.483 kb on - strand, within MMJJ_RS01760 at 341.484 kb on + strand, within MMJJ_RS01760 at 341.484 kb on + strand, within MMJJ_RS01760 at 341.529 kb on - strand, within MMJJ_RS01760 at 341.530 kb on + strand, within MMJJ_RS01760 at 341.544 kb on - strand, within MMJJ_RS01760 at 341.610 kb on + strand, within MMJJ_RS01760 at 341.610 kb on + strand, within MMJJ_RS01760 at 341.647 kb on - strand, within MMJJ_RS01760 at 341.647 kb on - strand, within MMJJ_RS01760 at 341.648 kb on + strand, within MMJJ_RS01760 at 341.648 kb on + strand, within MMJJ_RS01760 at 341.667 kb on - strand, within MMJJ_RS01760 at 341.760 kb on - strand, within MMJJ_RS01760 at 341.777 kb on + strand, within MMJJ_RS01760 at 341.777 kb on + strand, within MMJJ_RS01760 at 341.781 kb on + strand, within MMJJ_RS01760 at 341.795 kb on - strand, within MMJJ_RS01760 at 341.796 kb on + strand, within MMJJ_RS01760 at 341.796 kb on + strand, within MMJJ_RS01760 at 341.800 kb on + strand, within MMJJ_RS01760 at 341.840 kb on + strand at 341.841 kb on - strand at 341.857 kb on + strand at 341.871 kb on + strand at 341.871 kb on + strand at 341.876 kb on + strand at 341.884 kb on - strand at 341.927 kb on - strand at 341.931 kb on - strand at 341.931 kb on - strand at 341.962 kb on + strand at 341.996 kb on - strand at 341.997 kb on + strand at 342.079 kb on + strand, within MMJJ_RS01765 at 342.079 kb on + strand, within MMJJ_RS01765 at 342.080 kb on - strand, within MMJJ_RS01765 at 342.081 kb on + strand, within MMJJ_RS01765 at 342.100 kb on + strand, within MMJJ_RS01765 at 342.103 kb on + strand, within MMJJ_RS01765 at 342.103 kb on + strand, within MMJJ_RS01765
Per-strain Table
Position Strand Gene LocusTag Fraction H2 no stress control remove 338,234 - -0.3 338,234 - +0.3 338,235 + -0.3 338,239 + +0.0 338,289 + MMJJ_RS01745 0.12 +0.2 338,298 - MMJJ_RS01745 0.14 -0.2 338,301 + MMJJ_RS01745 0.15 -0.2 338,324 - MMJJ_RS01745 0.21 -0.3 338,324 - MMJJ_RS01745 0.21 -0.1 338,337 + MMJJ_RS01745 0.24 -0.5 338,341 - MMJJ_RS01745 0.25 +0.2 338,341 - MMJJ_RS01745 0.25 -0.2 338,342 + MMJJ_RS01745 0.25 -0.9 338,473 - MMJJ_RS01745 0.57 +0.5 338,482 - MMJJ_RS01745 0.60 -0.3 338,586 + MMJJ_RS01745 0.85 -0.0 338,601 - MMJJ_RS01745 0.89 +0.7 338,620 - -0.0 338,630 - -0.3 338,631 + -0.3 338,666 - -0.1 338,666 - -0.1 338,667 + +0.4 338,667 + +0.1 338,668 - -0.2 338,668 - -0.0 338,668 - -0.1 338,668 - -0.1 338,668 - +0.4 338,669 + -0.1 338,669 + -0.3 338,669 + +0.2 338,669 + +0.3 338,669 + -0.0 338,670 - -1.6 338,671 + -0.9 338,673 + -1.0 338,737 - -1.8 338,740 + -0.0 338,741 - -3.2 338,791 + MMJJ_RS01750 0.16 -3.3 338,792 - MMJJ_RS01750 0.17 -2.2 338,793 + MMJJ_RS01750 0.17 -0.9 338,797 - MMJJ_RS01750 0.19 -2.6 338,869 - MMJJ_RS01750 0.54 -1.3 338,894 + MMJJ_RS01750 0.66 -2.7 338,956 - +0.1 338,962 + -0.0 338,962 + +0.2 338,983 - +0.5 338,992 + +0.6 338,994 + +0.4 338,994 + -0.3 338,999 + +0.0 338,999 + +0.5 338,999 + +0.6 338,999 + +0.4 338,999 + +0.4 338,999 + -0.6 338,999 + +0.3 339,003 - +0.3 339,018 + +1.0 339,046 + +0.6 339,115 - MMJJ_RS09260 0.27 -1.5 339,285 + -0.0 339,388 + -1.7 339,538 - MMJJ_RS01755 0.16 -1.4 340,096 - MMJJ_RS01755 0.44 -1.5 340,170 + MMJJ_RS01755 0.48 -2.1 340,337 + MMJJ_RS01755 0.57 -1.3 340,492 - MMJJ_RS01755 0.65 -1.3 340,629 - MMJJ_RS01755 0.72 -0.5 340,955 + MMJJ_RS01755 0.89 -2.1 341,031 + -1.3 341,059 - -2.3 341,145 - -0.0 341,146 + +0.2 341,242 - +0.1 341,242 - -0.3 341,242 - +0.2 341,245 - +0.1 341,245 - -0.2 341,245 - -0.2 341,246 + -1.4 341,246 + -0.8 341,247 - -0.3 341,247 - -1.1 341,247 - +0.0 341,247 - -1.8 341,248 + +0.2 341,250 - -0.4 341,250 - +0.3 341,251 + -0.1 341,252 - -0.2 341,252 - -0.1 341,252 - -0.1 341,252 - -0.5 341,253 + +0.2 341,253 + +0.1 341,253 + +0.3 341,253 + +0.2 341,264 - +0.4 341,265 + +0.2 341,265 + -0.1 341,265 + +0.1 341,275 + -0.2 341,275 + +0.0 341,276 - -0.7 341,276 - -0.1 341,277 + +0.0 341,296 + +0.2 341,308 + -0.6 341,322 - -0.1 341,348 - MMJJ_RS01760 0.13 +0.2 341,349 + MMJJ_RS01760 0.13 -0.1 341,349 + MMJJ_RS01760 0.13 -0.3 341,349 + MMJJ_RS01760 0.13 +0.1 341,349 + MMJJ_RS01760 0.13 +0.3 341,375 - MMJJ_RS01760 0.17 -0.2 341,428 + MMJJ_RS01760 0.26 +0.6 341,461 + MMJJ_RS01760 0.32 -0.6 341,463 - MMJJ_RS01760 0.32 +0.1 341,464 + MMJJ_RS01760 0.32 -0.1 341,467 - MMJJ_RS01760 0.33 +0.0 341,483 - MMJJ_RS01760 0.35 -0.1 341,484 + MMJJ_RS01760 0.35 -0.1 341,484 + MMJJ_RS01760 0.35 -0.6 341,529 - MMJJ_RS01760 0.43 -0.8 341,530 + MMJJ_RS01760 0.43 +0.1 341,544 - MMJJ_RS01760 0.45 -0.0 341,610 + MMJJ_RS01760 0.56 +0.4 341,610 + MMJJ_RS01760 0.56 -0.1 341,647 - MMJJ_RS01760 0.62 +0.3 341,647 - MMJJ_RS01760 0.62 -0.7 341,648 + MMJJ_RS01760 0.62 -0.2 341,648 + MMJJ_RS01760 0.62 -0.2 341,667 - MMJJ_RS01760 0.65 -0.1 341,760 - MMJJ_RS01760 0.81 -0.3 341,777 + MMJJ_RS01760 0.83 +0.6 341,777 + MMJJ_RS01760 0.83 -0.2 341,781 + MMJJ_RS01760 0.84 -0.1 341,795 - MMJJ_RS01760 0.86 -0.2 341,796 + MMJJ_RS01760 0.87 +0.7 341,796 + MMJJ_RS01760 0.87 +0.9 341,800 + MMJJ_RS01760 0.87 +0.0 341,840 + -0.1 341,841 - -0.3 341,857 + -0.1 341,871 + -0.1 341,871 + -0.0 341,876 + +0.2 341,884 - -0.6 341,927 - -0.2 341,931 - -0.1 341,931 - +0.4 341,962 + -0.4 341,996 - +0.1 341,997 + -0.0 342,079 + MMJJ_RS01765 0.25 -0.3 342,079 + MMJJ_RS01765 0.25 -0.4 342,080 - MMJJ_RS01765 0.25 -0.9 342,081 + MMJJ_RS01765 0.26 +0.1 342,100 + MMJJ_RS01765 0.30 -0.8 342,103 + MMJJ_RS01765 0.31 -0.1 342,103 + MMJJ_RS01765 0.31 -0.6
Or see this region's nucleotide sequence