Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00605

Experiment: H2 no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00600 and MMJJ_RS00605 are separated by 122 nucleotidesMMJJ_RS00605 and MMJJ_RS00610 are separated by 40 nucleotides MMJJ_RS00600: MMJJ_RS00600 - hydroxymethylbilane synthase, at 114,046 to 114,960 _RS00600 MMJJ_RS00605: MMJJ_RS00605 - ABC transporter permease, at 115,083 to 116,276 _RS00605 MMJJ_RS00610: MMJJ_RS00610 - D-2-hydroxyacid dehydrogenase, at 116,317 to 117,270 _RS00610 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1at 114.309 kb on + strand, within MMJJ_RS00600at 114.309 kb on + strand, within MMJJ_RS00600at 114.539 kb on + strand, within MMJJ_RS00600at 114.610 kb on - strand, within MMJJ_RS00600at 114.611 kb on + strand, within MMJJ_RS00600at 114.863 kb on + strand, within MMJJ_RS00600at 114.976 kb on - strandat 115.041 kb on - strandat 115.041 kb on - strandat 115.042 kb on + strandat 115.043 kb on - strandat 115.043 kb on - strandat 115.044 kb on + strandat 115.046 kb on - strandat 115.046 kb on - strandat 115.056 kb on + strandat 115.066 kb on - strandat 115.067 kb on + strandat 115.071 kb on + strandat 115.113 kb on - strandat 115.162 kb on + strandat 115.162 kb on + strandat 115.174 kb on + strandat 115.192 kb on + strandat 115.215 kb on + strand, within MMJJ_RS00605at 115.246 kb on - strand, within MMJJ_RS00605at 115.247 kb on + strand, within MMJJ_RS00605at 115.247 kb on + strand, within MMJJ_RS00605at 115.269 kb on - strand, within MMJJ_RS00605at 115.278 kb on - strand, within MMJJ_RS00605at 115.346 kb on - strand, within MMJJ_RS00605at 115.483 kb on + strand, within MMJJ_RS00605at 115.495 kb on + strand, within MMJJ_RS00605at 115.581 kb on + strand, within MMJJ_RS00605at 115.600 kb on + strand, within MMJJ_RS00605at 115.600 kb on + strand, within MMJJ_RS00605at 115.640 kb on + strand, within MMJJ_RS00605at 115.802 kb on - strand, within MMJJ_RS00605at 115.834 kb on - strand, within MMJJ_RS00605at 115.839 kb on + strand, within MMJJ_RS00605at 115.896 kb on - strand, within MMJJ_RS00605at 115.897 kb on + strand, within MMJJ_RS00605at 116.135 kb on + strand, within MMJJ_RS00605at 116.168 kb on - strandat 116.173 kb on + strandat 116.183 kb on - strandat 116.183 kb on - strandat 116.205 kb on + strandat 116.205 kb on + strandat 116.205 kb on + strandat 116.208 kb on - strandat 116.235 kb on - strandat 116.236 kb on + strandat 116.236 kb on + strandat 116.256 kb on - strandat 116.257 kb on + strandat 116.257 kb on + strandat 116.257 kb on + strandat 116.269 kb on + strandat 116.293 kb on - strandat 116.307 kb on - strandat 116.307 kb on - strandat 116.318 kb on - strandat 116.319 kb on + strandat 116.322 kb on - strandat 116.322 kb on - strandat 116.323 kb on + strandat 116.323 kb on + strandat 116.323 kb on + strandat 116.327 kb on + strandat 116.327 kb on + strandat 116.336 kb on + strandat 116.336 kb on + strandat 116.337 kb on - strandat 116.372 kb on + strandat 116.386 kb on - strandat 116.386 kb on - strandat 116.406 kb on + strandat 116.406 kb on + strandat 116.431 kb on - strand, within MMJJ_RS00610at 116.431 kb on - strand, within MMJJ_RS00610at 116.431 kb on - strand, within MMJJ_RS00610at 116.431 kb on - strand, within MMJJ_RS00610at 116.432 kb on + strand, within MMJJ_RS00610at 116.432 kb on + strand, within MMJJ_RS00610at 116.433 kb on - strand, within MMJJ_RS00610at 116.433 kb on - strand, within MMJJ_RS00610at 116.433 kb on - strand, within MMJJ_RS00610at 116.433 kb on - strand, within MMJJ_RS00610at 116.433 kb on - strand, within MMJJ_RS00610at 116.433 kb on - strand, within MMJJ_RS00610at 116.433 kb on - strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.434 kb on + strand, within MMJJ_RS00610at 116.435 kb on - strand, within MMJJ_RS00610at 116.435 kb on - strand, within MMJJ_RS00610at 116.435 kb on - strand, within MMJJ_RS00610at 116.435 kb on - strand, within MMJJ_RS00610at 116.436 kb on + strand, within MMJJ_RS00610at 116.436 kb on + strand, within MMJJ_RS00610at 116.436 kb on + strand, within MMJJ_RS00610at 116.436 kb on + strand, within MMJJ_RS00610at 116.439 kb on - strand, within MMJJ_RS00610at 116.439 kb on - strand, within MMJJ_RS00610at 116.440 kb on + strand, within MMJJ_RS00610at 116.451 kb on - strand, within MMJJ_RS00610at 116.463 kb on - strand, within MMJJ_RS00610at 116.464 kb on + strand, within MMJJ_RS00610at 116.575 kb on + strand, within MMJJ_RS00610at 116.665 kb on - strand, within MMJJ_RS00610at 116.746 kb on - strand, within MMJJ_RS00610at 116.815 kb on - strand, within MMJJ_RS00610at 116.916 kb on - strand, within MMJJ_RS00610at 116.944 kb on + strand, within MMJJ_RS00610at 116.998 kb on - strand, within MMJJ_RS00610at 116.999 kb on + strand, within MMJJ_RS00610at 117.031 kb on + strand, within MMJJ_RS00610at 117.042 kb on - strand, within MMJJ_RS00610at 117.044 kb on - strand, within MMJJ_RS00610at 117.044 kb on - strand, within MMJJ_RS00610at 117.044 kb on - strand, within MMJJ_RS00610at 117.044 kb on - strand, within MMJJ_RS00610at 117.045 kb on + strand, within MMJJ_RS00610at 117.057 kb on - strand, within MMJJ_RS00610at 117.068 kb on - strand, within MMJJ_RS00610at 117.068 kb on - strand, within MMJJ_RS00610at 117.069 kb on + strand, within MMJJ_RS00610at 117.109 kb on - strand, within MMJJ_RS00610at 117.110 kb on + strand, within MMJJ_RS00610at 117.110 kb on + strand, within MMJJ_RS00610at 117.183 kb on + strandat 117.183 kb on + strandat 117.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 no stress control
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114,309 + MMJJ_RS00600 0.29 -1.5
114,309 + MMJJ_RS00600 0.29 -2.3
114,539 + MMJJ_RS00600 0.54 -2.5
114,610 - MMJJ_RS00600 0.62 -3.1
114,611 + MMJJ_RS00600 0.62 -3.3
114,863 + MMJJ_RS00600 0.89 -2.7
114,976 - -2.0
115,041 - -1.2
115,041 - -1.2
115,042 + -0.4
115,043 - +0.1
115,043 - +0.5
115,044 + -0.7
115,046 - -0.6
115,046 - -0.4
115,056 + -0.1
115,066 - +0.7
115,067 + +0.3
115,071 + -0.1
115,113 - -0.1
115,162 + -0.3
115,162 + +0.7
115,174 + +0.0
115,192 + +0.1
115,215 + MMJJ_RS00605 0.11 -0.1
115,246 - MMJJ_RS00605 0.14 +0.3
115,247 + MMJJ_RS00605 0.14 +1.1
115,247 + MMJJ_RS00605 0.14 +0.0
115,269 - MMJJ_RS00605 0.16 -0.3
115,278 - MMJJ_RS00605 0.16 -0.7
115,346 - MMJJ_RS00605 0.22 +0.3
115,483 + MMJJ_RS00605 0.34 -0.2
115,495 + MMJJ_RS00605 0.35 +0.3
115,581 + MMJJ_RS00605 0.42 +0.2
115,600 + MMJJ_RS00605 0.43 -0.6
115,600 + MMJJ_RS00605 0.43 +0.4
115,640 + MMJJ_RS00605 0.47 +0.0
115,802 - MMJJ_RS00605 0.60 -0.5
115,834 - MMJJ_RS00605 0.63 +0.5
115,839 + MMJJ_RS00605 0.63 +0.2
115,896 - MMJJ_RS00605 0.68 +0.3
115,897 + MMJJ_RS00605 0.68 +0.1
116,135 + MMJJ_RS00605 0.88 -1.1
116,168 - -0.3
116,173 + -0.1
116,183 - +0.0
116,183 - +0.1
116,205 + +0.2
116,205 + +0.1
116,205 + -0.4
116,208 - +0.1
116,235 - +0.1
116,236 + +0.1
116,236 + +0.2
116,256 - +0.1
116,257 + +0.1
116,257 + -0.3
116,257 + -0.0
116,269 + +0.2
116,293 - +0.1
116,307 - +0.2
116,307 - +0.3
116,318 - -0.1
116,319 + -0.0
116,322 - +0.1
116,322 - +0.5
116,323 + -0.8
116,323 + -0.3
116,323 + -0.4
116,327 + +0.1
116,327 + +0.0
116,336 + +0.6
116,336 + -0.1
116,337 - -0.4
116,372 + +0.2
116,386 - +0.4
116,386 - +0.3
116,406 + +0.1
116,406 + -0.5
116,431 - MMJJ_RS00610 0.12 +0.1
116,431 - MMJJ_RS00610 0.12 -0.6
116,431 - MMJJ_RS00610 0.12 +0.0
116,431 - MMJJ_RS00610 0.12 -0.3
116,432 + MMJJ_RS00610 0.12 -0.5
116,432 + MMJJ_RS00610 0.12 +0.2
116,433 - MMJJ_RS00610 0.12 +0.0
116,433 - MMJJ_RS00610 0.12 -0.4
116,433 - MMJJ_RS00610 0.12 -3.0
116,433 - MMJJ_RS00610 0.12 +0.1
116,433 - MMJJ_RS00610 0.12 -0.5
116,433 - MMJJ_RS00610 0.12 -0.0
116,433 - MMJJ_RS00610 0.12 -1.0
116,434 + MMJJ_RS00610 0.12 -0.5
116,434 + MMJJ_RS00610 0.12 -0.1
116,434 + MMJJ_RS00610 0.12 +0.1
116,434 + MMJJ_RS00610 0.12 +0.0
116,434 + MMJJ_RS00610 0.12 +0.5
116,434 + MMJJ_RS00610 0.12 +0.4
116,434 + MMJJ_RS00610 0.12 +0.0
116,434 + MMJJ_RS00610 0.12 +0.6
116,434 + MMJJ_RS00610 0.12 +0.1
116,434 + MMJJ_RS00610 0.12 -0.5
116,434 + MMJJ_RS00610 0.12 -0.9
116,434 + MMJJ_RS00610 0.12 +0.0
116,434 + MMJJ_RS00610 0.12 -0.1
116,434 + MMJJ_RS00610 0.12 +0.0
116,434 + MMJJ_RS00610 0.12 -0.0
116,434 + MMJJ_RS00610 0.12 -0.5
116,435 - MMJJ_RS00610 0.12 +0.2
116,435 - MMJJ_RS00610 0.12 +0.3
116,435 - MMJJ_RS00610 0.12 -0.3
116,435 - MMJJ_RS00610 0.12 -0.3
116,436 + MMJJ_RS00610 0.12 -0.2
116,436 + MMJJ_RS00610 0.12 -0.0
116,436 + MMJJ_RS00610 0.12 -0.3
116,436 + MMJJ_RS00610 0.12 -0.6
116,439 - MMJJ_RS00610 0.13 -0.0
116,439 - MMJJ_RS00610 0.13 +0.1
116,440 + MMJJ_RS00610 0.13 -0.1
116,451 - MMJJ_RS00610 0.14 +0.0
116,463 - MMJJ_RS00610 0.15 +0.3
116,464 + MMJJ_RS00610 0.15 -0.2
116,575 + MMJJ_RS00610 0.27 -0.5
116,665 - MMJJ_RS00610 0.36 +0.4
116,746 - MMJJ_RS00610 0.45 -0.3
116,815 - MMJJ_RS00610 0.52 +0.0
116,916 - MMJJ_RS00610 0.63 -0.2
116,944 + MMJJ_RS00610 0.66 +0.2
116,998 - MMJJ_RS00610 0.71 -0.1
116,999 + MMJJ_RS00610 0.71 +0.3
117,031 + MMJJ_RS00610 0.75 +0.5
117,042 - MMJJ_RS00610 0.76 -0.4
117,044 - MMJJ_RS00610 0.76 +0.1
117,044 - MMJJ_RS00610 0.76 -0.6
117,044 - MMJJ_RS00610 0.76 -0.0
117,044 - MMJJ_RS00610 0.76 -1.0
117,045 + MMJJ_RS00610 0.76 -0.3
117,057 - MMJJ_RS00610 0.78 +0.2
117,068 - MMJJ_RS00610 0.79 +0.1
117,068 - MMJJ_RS00610 0.79 -0.2
117,069 + MMJJ_RS00610 0.79 +0.4
117,109 - MMJJ_RS00610 0.83 +0.1
117,110 + MMJJ_RS00610 0.83 +0.0
117,110 + MMJJ_RS00610 0.83 -0.3
117,183 + -0.3
117,183 + -0.1
117,262 - -0.2

Or see this region's nucleotide sequence