Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00615

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00620 and HMPREF1058_RS00615 are separated by 148 nucleotidesHMPREF1058_RS00615 and HMPREF1058_RS00610 are separated by 635 nucleotides HMPREF1058_RS00620: HMPREF1058_RS00620 - GH32 C-terminal domain-containing protein, at 31,329 to 33,212 _RS00620 HMPREF1058_RS00615: HMPREF1058_RS00615 - TonB-dependent receptor, at 33,361 to 35,679 _RS00615 HMPREF1058_RS00610: HMPREF1058_RS00610 - DsbA family protein, at 36,315 to 36,926 _RS00610 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 32.438 kb on + strand, within HMPREF1058_RS00620at 32.458 kb on + strand, within HMPREF1058_RS00620at 32.466 kb on - strand, within HMPREF1058_RS00620at 32.471 kb on + strand, within HMPREF1058_RS00620at 32.471 kb on + strand, within HMPREF1058_RS00620at 32.498 kb on + strand, within HMPREF1058_RS00620at 32.526 kb on + strand, within HMPREF1058_RS00620at 32.528 kb on + strand, within HMPREF1058_RS00620at 32.528 kb on + strand, within HMPREF1058_RS00620at 32.544 kb on - strand, within HMPREF1058_RS00620at 32.561 kb on + strand, within HMPREF1058_RS00620at 32.586 kb on - strand, within HMPREF1058_RS00620at 32.630 kb on + strand, within HMPREF1058_RS00620at 32.631 kb on - strand, within HMPREF1058_RS00620at 32.729 kb on + strand, within HMPREF1058_RS00620at 32.729 kb on + strand, within HMPREF1058_RS00620at 32.764 kb on + strand, within HMPREF1058_RS00620at 32.846 kb on + strand, within HMPREF1058_RS00620at 32.957 kb on - strand, within HMPREF1058_RS00620at 32.957 kb on - strand, within HMPREF1058_RS00620at 32.957 kb on - strand, within HMPREF1058_RS00620at 32.959 kb on + strand, within HMPREF1058_RS00620at 33.028 kb on - strandat 33.089 kb on + strandat 33.093 kb on + strandat 33.094 kb on - strandat 33.107 kb on + strandat 33.218 kb on - strandat 33.218 kb on - strandat 33.219 kb on + strandat 33.310 kb on - strandat 33.314 kb on - strandat 33.316 kb on - strandat 33.408 kb on - strandat 33.435 kb on - strandat 33.647 kb on - strand, within HMPREF1058_RS00615at 33.676 kb on - strand, within HMPREF1058_RS00615at 33.866 kb on - strand, within HMPREF1058_RS00615at 33.881 kb on + strand, within HMPREF1058_RS00615at 33.900 kb on + strand, within HMPREF1058_RS00615at 33.904 kb on - strand, within HMPREF1058_RS00615at 33.910 kb on - strand, within HMPREF1058_RS00615at 33.952 kb on - strand, within HMPREF1058_RS00615at 33.966 kb on - strand, within HMPREF1058_RS00615at 34.008 kb on - strand, within HMPREF1058_RS00615at 34.202 kb on - strandat 34.202 kb on - strand, within HMPREF1058_RS00615at 34.276 kb on - strand, within HMPREF1058_RS00615at 34.276 kb on - strand, within HMPREF1058_RS00615at 34.276 kb on - strand, within HMPREF1058_RS00615at 34.277 kb on + strand, within HMPREF1058_RS00615at 34.277 kb on + strand, within HMPREF1058_RS00615at 34.277 kb on + strand, within HMPREF1058_RS00615at 34.278 kb on - strand, within HMPREF1058_RS00615at 34.331 kb on + strand, within HMPREF1058_RS00615at 34.332 kb on - strand, within HMPREF1058_RS00615at 34.369 kb on - strand, within HMPREF1058_RS00615at 34.369 kb on - strandat 34.404 kb on - strand, within HMPREF1058_RS00615at 34.404 kb on - strand, within HMPREF1058_RS00615at 34.431 kb on + strand, within HMPREF1058_RS00615at 34.433 kb on + strand, within HMPREF1058_RS00615at 34.433 kb on + strand, within HMPREF1058_RS00615at 34.509 kb on + strand, within HMPREF1058_RS00615at 34.517 kb on + strand, within HMPREF1058_RS00615at 34.518 kb on - strand, within HMPREF1058_RS00615at 34.525 kb on - strand, within HMPREF1058_RS00615at 34.553 kb on + strand, within HMPREF1058_RS00615at 34.554 kb on - strand, within HMPREF1058_RS00615at 34.584 kb on + strand, within HMPREF1058_RS00615at 34.614 kb on + strand, within HMPREF1058_RS00615at 34.630 kb on + strand, within HMPREF1058_RS00615at 34.630 kb on + strand, within HMPREF1058_RS00615at 34.631 kb on - strand, within HMPREF1058_RS00615at 34.631 kb on - strand, within HMPREF1058_RS00615at 34.631 kb on - strand, within HMPREF1058_RS00615at 34.631 kb on - strand, within HMPREF1058_RS00615at 34.666 kb on + strand, within HMPREF1058_RS00615at 34.667 kb on - strand, within HMPREF1058_RS00615at 34.667 kb on - strand, within HMPREF1058_RS00615at 34.667 kb on - strand, within HMPREF1058_RS00615at 34.743 kb on + strand, within HMPREF1058_RS00615at 34.744 kb on - strand, within HMPREF1058_RS00615at 34.766 kb on + strand, within HMPREF1058_RS00615at 34.766 kb on + strand, within HMPREF1058_RS00615at 34.766 kb on + strand, within HMPREF1058_RS00615at 34.787 kb on + strand, within HMPREF1058_RS00615at 34.794 kb on + strand, within HMPREF1058_RS00615at 34.794 kb on + strand, within HMPREF1058_RS00615at 34.919 kb on + strand, within HMPREF1058_RS00615at 35.003 kb on + strand, within HMPREF1058_RS00615at 35.003 kb on + strand, within HMPREF1058_RS00615at 35.055 kb on - strand, within HMPREF1058_RS00615at 35.115 kb on + strand, within HMPREF1058_RS00615at 35.118 kb on - strand, within HMPREF1058_RS00615at 35.183 kb on + strand, within HMPREF1058_RS00615at 35.270 kb on + strand, within HMPREF1058_RS00615at 35.271 kb on - strand, within HMPREF1058_RS00615at 35.341 kb on + strand, within HMPREF1058_RS00615at 35.341 kb on + strand, within HMPREF1058_RS00615at 35.355 kb on + strand, within HMPREF1058_RS00615at 35.430 kb on + strand, within HMPREF1058_RS00615at 35.446 kb on - strand, within HMPREF1058_RS00615at 35.446 kb on - strand, within HMPREF1058_RS00615at 35.448 kb on - strandat 35.590 kb on - strandat 35.633 kb on - strandat 35.685 kb on + strandat 35.685 kb on + strandat 35.686 kb on - strandat 35.686 kb on - strandat 35.798 kb on + strandat 35.799 kb on - strandat 35.968 kb on + strandat 36.071 kb on + strandat 36.109 kb on + strandat 36.129 kb on - strandat 36.176 kb on - strandat 36.176 kb on - strandat 36.241 kb on + strandat 36.289 kb on - strandat 36.300 kb on + strandat 36.481 kb on + strand, within HMPREF1058_RS00610at 36.533 kb on - strand, within HMPREF1058_RS00610at 36.631 kb on + strand, within HMPREF1058_RS00610at 36.632 kb on - strand, within HMPREF1058_RS00610at 36.668 kb on - strand, within HMPREF1058_RS00610

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
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32,438 + HMPREF1058_RS00620 0.59 -2.9
32,458 + HMPREF1058_RS00620 0.60 -1.3
32,466 - HMPREF1058_RS00620 0.60 -1.5
32,471 + HMPREF1058_RS00620 0.61 -2.1
32,471 + HMPREF1058_RS00620 0.61 -3.2
32,498 + HMPREF1058_RS00620 0.62 -2.8
32,526 + HMPREF1058_RS00620 0.64 -3.3
32,528 + HMPREF1058_RS00620 0.64 -0.7
32,528 + HMPREF1058_RS00620 0.64 -3.3
32,544 - HMPREF1058_RS00620 0.64 -2.8
32,561 + HMPREF1058_RS00620 0.65 -2.8
32,586 - HMPREF1058_RS00620 0.67 -2.6
32,630 + HMPREF1058_RS00620 0.69 -1.7
32,631 - HMPREF1058_RS00620 0.69 -1.4
32,729 + HMPREF1058_RS00620 0.74 -2.7
32,729 + HMPREF1058_RS00620 0.74 -0.7
32,764 + HMPREF1058_RS00620 0.76 -2.1
32,846 + HMPREF1058_RS00620 0.81 -2.9
32,957 - HMPREF1058_RS00620 0.86 -2.4
32,957 - HMPREF1058_RS00620 0.86 -2.5
32,957 - HMPREF1058_RS00620 0.86 -1.7
32,959 + HMPREF1058_RS00620 0.87 -2.6
33,028 - -2.3
33,089 + -4.1
33,093 + -1.5
33,094 - -2.4
33,107 + -1.2
33,218 - -1.0
33,218 - -1.5
33,219 + -0.7
33,310 - +0.3
33,314 - -0.8
33,316 - -1.0
33,408 - -0.7
33,435 - -2.4
33,647 - HMPREF1058_RS00615 0.12 -2.0
33,676 - HMPREF1058_RS00615 0.14 -2.8
33,866 - HMPREF1058_RS00615 0.22 -2.3
33,881 + HMPREF1058_RS00615 0.22 -0.3
33,900 + HMPREF1058_RS00615 0.23 -3.2
33,904 - HMPREF1058_RS00615 0.23 -2.2
33,910 - HMPREF1058_RS00615 0.24 -0.4
33,952 - HMPREF1058_RS00615 0.25 -2.3
33,966 - HMPREF1058_RS00615 0.26 -2.3
34,008 - HMPREF1058_RS00615 0.28 -1.5
34,202 - +0.3
34,202 - HMPREF1058_RS00615 0.36 -2.0
34,276 - HMPREF1058_RS00615 0.39 -1.8
34,276 - HMPREF1058_RS00615 0.39 -1.0
34,276 - HMPREF1058_RS00615 0.39 -3.0
34,277 + HMPREF1058_RS00615 0.39 -2.5
34,277 + HMPREF1058_RS00615 0.39 -1.7
34,277 + HMPREF1058_RS00615 0.39 -1.5
34,278 - HMPREF1058_RS00615 0.40 -2.3
34,331 + HMPREF1058_RS00615 0.42 -3.3
34,332 - HMPREF1058_RS00615 0.42 -0.8
34,369 - HMPREF1058_RS00615 0.43 -2.8
34,369 - -0.7
34,404 - HMPREF1058_RS00615 0.45 -1.4
34,404 - HMPREF1058_RS00615 0.45 -1.8
34,431 + HMPREF1058_RS00615 0.46 -1.6
34,433 + HMPREF1058_RS00615 0.46 -0.8
34,433 + HMPREF1058_RS00615 0.46 -3.1
34,509 + HMPREF1058_RS00615 0.50 -1.7
34,517 + HMPREF1058_RS00615 0.50 -1.0
34,518 - HMPREF1058_RS00615 0.50 -2.4
34,525 - HMPREF1058_RS00615 0.50 -2.2
34,553 + HMPREF1058_RS00615 0.51 -1.3
34,554 - HMPREF1058_RS00615 0.51 +0.0
34,584 + HMPREF1058_RS00615 0.53 +0.0
34,614 + HMPREF1058_RS00615 0.54 +0.3
34,630 + HMPREF1058_RS00615 0.55 -2.3
34,630 + HMPREF1058_RS00615 0.55 -3.3
34,631 - HMPREF1058_RS00615 0.55 -3.7
34,631 - HMPREF1058_RS00615 0.55 -2.2
34,631 - HMPREF1058_RS00615 0.55 -2.3
34,631 - HMPREF1058_RS00615 0.55 -2.7
34,666 + HMPREF1058_RS00615 0.56 -1.5
34,667 - HMPREF1058_RS00615 0.56 -3.5
34,667 - HMPREF1058_RS00615 0.56 -2.1
34,667 - HMPREF1058_RS00615 0.56 -2.5
34,743 + HMPREF1058_RS00615 0.60 -1.0
34,744 - HMPREF1058_RS00615 0.60 -3.2
34,766 + HMPREF1058_RS00615 0.61 -3.1
34,766 + HMPREF1058_RS00615 0.61 -3.0
34,766 + HMPREF1058_RS00615 0.61 -1.7
34,787 + HMPREF1058_RS00615 0.61 -1.8
34,794 + HMPREF1058_RS00615 0.62 -2.8
34,794 + HMPREF1058_RS00615 0.62 -0.5
34,919 + HMPREF1058_RS00615 0.67 -2.0
35,003 + HMPREF1058_RS00615 0.71 -2.6
35,003 + HMPREF1058_RS00615 0.71 -2.8
35,055 - HMPREF1058_RS00615 0.73 -0.2
35,115 + HMPREF1058_RS00615 0.76 -0.7
35,118 - HMPREF1058_RS00615 0.76 -3.1
35,183 + HMPREF1058_RS00615 0.79 -0.4
35,270 + HMPREF1058_RS00615 0.82 -1.7
35,271 - HMPREF1058_RS00615 0.82 -1.3
35,341 + HMPREF1058_RS00615 0.85 -2.6
35,341 + HMPREF1058_RS00615 0.85 -1.0
35,355 + HMPREF1058_RS00615 0.86 -2.5
35,430 + HMPREF1058_RS00615 0.89 -1.2
35,446 - HMPREF1058_RS00615 0.90 -3.0
35,446 - HMPREF1058_RS00615 0.90 -1.7
35,448 - -1.3
35,590 - -2.0
35,633 - -1.5
35,685 + -2.0
35,685 + -2.9
35,686 - -1.3
35,686 - -2.4
35,798 + -1.5
35,799 - -0.4
35,968 + +0.1
36,071 + -0.7
36,109 + -0.9
36,129 - +0.0
36,176 - -1.3
36,176 - -0.5
36,241 + -0.0
36,289 - -0.3
36,300 + -0.3
36,481 + HMPREF1058_RS00610 0.27 -0.2
36,533 - HMPREF1058_RS00610 0.36 -0.4
36,631 + HMPREF1058_RS00610 0.52 +0.9
36,632 - HMPREF1058_RS00610 0.52 +0.6
36,668 - HMPREF1058_RS00610 0.58 -0.5

Or see this region's nucleotide sequence