Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00570 and HMPREF1058_RS00565 are separated by 4 nucleotides HMPREF1058_RS00565 and HMPREF1058_RS00560 are separated by 294 nucleotides HMPREF1058_RS00560 and HMPREF1058_RS00555 are separated by 5 nucleotides
HMPREF1058_RS00570: HMPREF1058_RS00570 - HD domain-containing protein, at 49,403 to 50,884
_RS00570
HMPREF1058_RS00565: HMPREF1058_RS00565 - hemolysin III family protein, at 50,889 to 51,524
_RS00565
HMPREF1058_RS00560: HMPREF1058_RS00560 - anaerobic ribonucleoside triphosphate reductase, at 51,819 to 54,095
_RS00560
HMPREF1058_RS00555: HMPREF1058_RS00555 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 54,101 to 54,559
_RS00555
Position (kb) 51
52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 50.865 kb on + strand at 50.865 kb on + strand at 50.897 kb on - strand at 50.956 kb on + strand, within HMPREF1058_RS00565 at 50.957 kb on - strand, within HMPREF1058_RS00565 at 51.041 kb on - strand, within HMPREF1058_RS00565 at 51.060 kb on + strand, within HMPREF1058_RS00565 at 51.061 kb on - strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.221 kb on + strand, within HMPREF1058_RS00565 at 51.259 kb on + strand, within HMPREF1058_RS00565 at 51.307 kb on - strand, within HMPREF1058_RS00565 at 51.308 kb on + strand, within HMPREF1058_RS00565 at 51.308 kb on + strand at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.311 kb on - strand, within HMPREF1058_RS00565 at 51.374 kb on + strand, within HMPREF1058_RS00565 at 51.405 kb on + strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.449 kb on + strand, within HMPREF1058_RS00565 at 51.754 kb on + strand at 51.754 kb on + strand at 52.043 kb on - strand at 52.065 kb on + strand, within HMPREF1058_RS00560 at 52.068 kb on - strand, within HMPREF1058_RS00560 at 52.251 kb on - strand, within HMPREF1058_RS00560 at 52.254 kb on + strand at 52.403 kb on + strand, within HMPREF1058_RS00560 at 52.562 kb on - strand, within HMPREF1058_RS00560 at 52.780 kb on + strand, within HMPREF1058_RS00560 at 52.878 kb on + strand, within HMPREF1058_RS00560 at 53.036 kb on + strand, within HMPREF1058_RS00560 at 53.150 kb on - strand, within HMPREF1058_RS00560 at 53.993 kb on + strand at 53.993 kb on + strand at 53.994 kb on - strand at 53.994 kb on - strand at 54.594 kb on + strand at 54.596 kb on + strand at 54.733 kb on + strand at 54.755 kb on + strand at 54.755 kb on + strand at 54.756 kb on - strand at 54.764 kb on - strand at 54.769 kb on + strand at 54.797 kb on + strand at 54.798 kb on - strand at 54.798 kb on - strand at 54.804 kb on - strand at 54.806 kb on + strand at 54.814 kb on - strand at 54.855 kb on + strand at 54.856 kb on - strand at 54.859 kb on + strand at 54.859 kb on + strand at 54.997 kb on - strand at 55.029 kb on - strand at 55.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) remove 50,865 + -0.3 50,865 + +0.3 50,897 - -1.2 50,956 + HMPREF1058_RS00565 0.11 -1.3 50,957 - HMPREF1058_RS00565 0.11 -2.3 51,041 - HMPREF1058_RS00565 0.24 -1.5 51,060 + HMPREF1058_RS00565 0.27 -1.4 51,061 - HMPREF1058_RS00565 0.27 -0.8 51,162 + HMPREF1058_RS00565 0.43 -1.5 51,162 + HMPREF1058_RS00565 0.43 -1.3 51,221 + HMPREF1058_RS00565 0.52 -1.1 51,259 + HMPREF1058_RS00565 0.58 +1.3 51,307 - HMPREF1058_RS00565 0.66 -1.9 51,308 + HMPREF1058_RS00565 0.66 -1.1 51,308 + +2.9 51,309 - HMPREF1058_RS00565 0.66 -1.6 51,309 - HMPREF1058_RS00565 0.66 -0.9 51,311 - HMPREF1058_RS00565 0.66 -1.5 51,374 + HMPREF1058_RS00565 0.76 -2.1 51,405 + HMPREF1058_RS00565 0.81 -1.6 51,406 - HMPREF1058_RS00565 0.81 -2.7 51,406 - HMPREF1058_RS00565 0.81 -2.8 51,449 + HMPREF1058_RS00565 0.88 -1.6 51,754 + +0.3 51,754 + -1.1 52,043 - +0.0 52,065 + HMPREF1058_RS00560 0.11 -1.4 52,068 - HMPREF1058_RS00560 0.11 -1.1 52,251 - HMPREF1058_RS00560 0.19 -0.3 52,254 + -0.3 52,403 + HMPREF1058_RS00560 0.26 +0.3 52,562 - HMPREF1058_RS00560 0.33 +0.7 52,780 + HMPREF1058_RS00560 0.42 -2.3 52,878 + HMPREF1058_RS00560 0.47 -1.3 53,036 + HMPREF1058_RS00560 0.53 -1.3 53,150 - HMPREF1058_RS00560 0.58 -0.7 53,993 + +0.0 53,993 + +0.0 53,994 - -2.5 53,994 - +0.7 54,594 + -0.3 54,596 + -0.3 54,733 + -0.7 54,755 + -0.4 54,755 + -0.1 54,756 - -0.3 54,764 - -0.3 54,769 + -0.5 54,797 + +0.2 54,798 - -1.0 54,798 - -1.3 54,804 - -0.2 54,806 + +0.9 54,814 - -0.5 54,855 + -0.3 54,856 - -0.4 54,859 + -0.4 54,859 + -1.4 54,997 - +0.5 55,029 - +0.4 55,030 + +1.3
Or see this region's nucleotide sequence