Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00285

Experiment: H2 no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00275 and MMJJ_RS00280 are separated by 16 nucleotidesMMJJ_RS00280 and MMJJ_RS00285 are separated by 5 nucleotidesMMJJ_RS00285 and MMJJ_RS00290 are separated by 275 nucleotides MMJJ_RS00275: MMJJ_RS00275 - coenzyme F420-0:L-glutamate ligase, at 53,331 to 54,077 _RS00275 MMJJ_RS00280: MMJJ_RS00280 - shikimate dehydrogenase, at 54,094 to 54,930 _RS00280 MMJJ_RS00285: MMJJ_RS00285 - UPF0254 family protein, at 54,936 to 55,433 _RS00285 MMJJ_RS00290: MMJJ_RS00290 - CheF family chemotaxis protein, at 55,709 to 56,755 _RS00290 Position (kb) 54 55 56Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 53.981 kb on + strand, within MMJJ_RS00275at 54.006 kb on + strandat 54.108 kb on - strandat 54.130 kb on - strandat 54.131 kb on + strandat 54.298 kb on + strand, within MMJJ_RS00280at 54.495 kb on - strand, within MMJJ_RS00280at 54.862 kb on - strandat 54.943 kb on + strandat 54.950 kb on + strandat 54.977 kb on - strandat 54.977 kb on - strandat 54.977 kb on - strandat 54.982 kb on - strandat 54.993 kb on - strand, within MMJJ_RS00285at 55.018 kb on + strand, within MMJJ_RS00285at 55.033 kb on + strand, within MMJJ_RS00285at 55.035 kb on - strand, within MMJJ_RS00285at 55.035 kb on - strand, within MMJJ_RS00285at 55.036 kb on + strand, within MMJJ_RS00285at 55.036 kb on + strand, within MMJJ_RS00285at 55.067 kb on + strand, within MMJJ_RS00285at 55.076 kb on + strand, within MMJJ_RS00285at 55.084 kb on + strand, within MMJJ_RS00285at 55.086 kb on - strand, within MMJJ_RS00285at 55.179 kb on - strand, within MMJJ_RS00285at 55.182 kb on - strand, within MMJJ_RS00285at 55.183 kb on + strand, within MMJJ_RS00285at 55.185 kb on - strand, within MMJJ_RS00285at 55.185 kb on - strand, within MMJJ_RS00285at 55.185 kb on - strand, within MMJJ_RS00285at 55.186 kb on + strand, within MMJJ_RS00285at 55.186 kb on + strand, within MMJJ_RS00285at 55.202 kb on - strand, within MMJJ_RS00285at 55.202 kb on - strand, within MMJJ_RS00285at 55.202 kb on - strand, within MMJJ_RS00285at 55.205 kb on + strand, within MMJJ_RS00285at 55.303 kb on + strand, within MMJJ_RS00285at 55.303 kb on + strand, within MMJJ_RS00285at 55.306 kb on - strand, within MMJJ_RS00285at 55.306 kb on - strand, within MMJJ_RS00285at 55.307 kb on + strand, within MMJJ_RS00285at 55.307 kb on + strand, within MMJJ_RS00285at 55.307 kb on + strand, within MMJJ_RS00285at 55.307 kb on + strand, within MMJJ_RS00285at 55.307 kb on + strand, within MMJJ_RS00285at 55.307 kb on + strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.308 kb on - strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strand, within MMJJ_RS00285at 55.309 kb on + strandat 55.309 kb on + strand, within MMJJ_RS00285at 55.330 kb on - strand, within MMJJ_RS00285at 55.330 kb on - strand, within MMJJ_RS00285at 55.330 kb on - strand, within MMJJ_RS00285at 55.355 kb on - strand, within MMJJ_RS00285at 55.356 kb on + strand, within MMJJ_RS00285at 55.377 kb on - strand, within MMJJ_RS00285at 55.383 kb on + strand, within MMJJ_RS00285at 55.383 kb on + strand, within MMJJ_RS00285at 55.434 kb on + strandat 55.436 kb on - strandat 55.446 kb on + strandat 55.466 kb on + strandat 55.482 kb on - strandat 55.485 kb on - strandat 55.487 kb on - strandat 55.487 kb on - strandat 55.487 kb on - strandat 55.487 kb on - strandat 55.488 kb on + strandat 55.488 kb on + strandat 55.488 kb on + strandat 55.491 kb on + strandat 55.496 kb on + strandat 55.506 kb on + strandat 55.509 kb on - strandat 55.510 kb on + strandat 55.519 kb on - strandat 55.519 kb on - strandat 55.523 kb on + strandat 55.527 kb on - strandat 55.527 kb on - strandat 55.527 kb on - strandat 55.527 kb on - strandat 55.528 kb on + strandat 55.533 kb on - strandat 55.538 kb on - strandat 55.538 kb on - strandat 55.539 kb on + strandat 55.547 kb on - strandat 55.548 kb on + strandat 55.554 kb on + strandat 55.557 kb on - strandat 55.568 kb on - strandat 55.568 kb on - strandat 55.569 kb on + strandat 55.569 kb on + strandat 55.596 kb on - strandat 55.597 kb on + strandat 55.599 kb on + strandat 55.600 kb on - strandat 55.604 kb on - strandat 55.604 kb on - strandat 55.605 kb on + strandat 55.606 kb on - strandat 55.606 kb on - strandat 55.634 kb on - strandat 55.635 kb on + strandat 55.635 kb on + strandat 55.644 kb on - strandat 55.645 kb on + strandat 55.646 kb on - strandat 55.646 kb on - strandat 55.646 kb on - strandat 55.646 kb on - strandat 55.647 kb on + strandat 55.647 kb on + strandat 55.682 kb on + strandat 55.720 kb on - strandat 55.766 kb on - strandat 55.994 kb on + strand, within MMJJ_RS00290at 55.998 kb on - strand, within MMJJ_RS00290at 55.998 kb on - strand, within MMJJ_RS00290at 55.999 kb on + strand, within MMJJ_RS00290at 55.999 kb on + strand, within MMJJ_RS00290at 56.025 kb on + strand, within MMJJ_RS00290at 56.025 kb on + strand, within MMJJ_RS00290at 56.040 kb on - strand, within MMJJ_RS00290at 56.062 kb on + strand, within MMJJ_RS00290at 56.097 kb on - strand, within MMJJ_RS00290at 56.097 kb on - strand, within MMJJ_RS00290at 56.098 kb on + strand, within MMJJ_RS00290at 56.102 kb on - strand, within MMJJ_RS00290at 56.102 kb on - strand, within MMJJ_RS00290at 56.103 kb on + strand, within MMJJ_RS00290at 56.103 kb on + strand, within MMJJ_RS00290at 56.132 kb on + strand, within MMJJ_RS00290at 56.242 kb on - strand, within MMJJ_RS00290at 56.242 kb on - strand, within MMJJ_RS00290at 56.256 kb on + strand, within MMJJ_RS00290at 56.262 kb on - strand, within MMJJ_RS00290at 56.267 kb on + strand, within MMJJ_RS00290at 56.272 kb on - strand, within MMJJ_RS00290at 56.272 kb on - strand, within MMJJ_RS00290at 56.273 kb on + strand, within MMJJ_RS00290at 56.371 kb on - strand, within MMJJ_RS00290at 56.372 kb on + strand, within MMJJ_RS00290at 56.397 kb on - strand, within MMJJ_RS00290at 56.397 kb on - strand, within MMJJ_RS00290at 56.397 kb on - strand, within MMJJ_RS00290at 56.398 kb on + strand, within MMJJ_RS00290at 56.398 kb on + strand, within MMJJ_RS00290at 56.398 kb on + strand, within MMJJ_RS00290at 56.406 kb on - strand, within MMJJ_RS00290at 56.411 kb on - strand, within MMJJ_RS00290at 56.412 kb on + strand, within MMJJ_RS00290

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 no stress control
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53,981 + MMJJ_RS00275 0.87 -2.6
54,006 + -1.6
54,108 - -0.5
54,130 - -4.8
54,131 + -2.5
54,298 + MMJJ_RS00280 0.24 -1.0
54,495 - MMJJ_RS00280 0.48 -1.9
54,862 - -0.6
54,943 + -2.8
54,950 + -0.6
54,977 - -0.5
54,977 - -1.1
54,977 - -1.8
54,982 - -1.6
54,993 - MMJJ_RS00285 0.11 -2.2
55,018 + MMJJ_RS00285 0.16 +0.1
55,033 + MMJJ_RS00285 0.19 -1.7
55,035 - MMJJ_RS00285 0.20 -0.2
55,035 - MMJJ_RS00285 0.20 -1.3
55,036 + MMJJ_RS00285 0.20 -2.6
55,036 + MMJJ_RS00285 0.20 -2.6
55,067 + MMJJ_RS00285 0.26 -1.7
55,076 + MMJJ_RS00285 0.28 -3.2
55,084 + MMJJ_RS00285 0.30 -2.0
55,086 - MMJJ_RS00285 0.30 -1.8
55,179 - MMJJ_RS00285 0.49 -0.5
55,182 - MMJJ_RS00285 0.49 -0.8
55,183 + MMJJ_RS00285 0.50 -0.9
55,185 - MMJJ_RS00285 0.50 -1.6
55,185 - MMJJ_RS00285 0.50 -1.6
55,185 - MMJJ_RS00285 0.50 -2.2
55,186 + MMJJ_RS00285 0.50 -1.5
55,186 + MMJJ_RS00285 0.50 -2.0
55,202 - MMJJ_RS00285 0.53 -2.1
55,202 - MMJJ_RS00285 0.53 -0.6
55,202 - MMJJ_RS00285 0.53 -0.9
55,205 + MMJJ_RS00285 0.54 -2.4
55,303 + MMJJ_RS00285 0.74 -0.9
55,303 + MMJJ_RS00285 0.74 -3.8
55,306 - MMJJ_RS00285 0.74 -0.3
55,306 - MMJJ_RS00285 0.74 -2.3
55,307 + MMJJ_RS00285 0.74 -1.5
55,307 + MMJJ_RS00285 0.74 -1.6
55,307 + MMJJ_RS00285 0.74 -1.7
55,307 + MMJJ_RS00285 0.74 -1.5
55,307 + MMJJ_RS00285 0.74 -0.4
55,307 + MMJJ_RS00285 0.74 -0.3
55,308 - MMJJ_RS00285 0.75 -1.7
55,308 - MMJJ_RS00285 0.75 +0.2
55,308 - MMJJ_RS00285 0.75 -2.2
55,308 - MMJJ_RS00285 0.75 -0.7
55,308 - MMJJ_RS00285 0.75 -2.5
55,308 - MMJJ_RS00285 0.75 -0.8
55,308 - MMJJ_RS00285 0.75 -1.1
55,308 - MMJJ_RS00285 0.75 -1.2
55,308 - MMJJ_RS00285 0.75 -1.6
55,308 - MMJJ_RS00285 0.75 -1.5
55,309 + MMJJ_RS00285 0.75 -1.6
55,309 + MMJJ_RS00285 0.75 -1.2
55,309 + MMJJ_RS00285 0.75 -2.3
55,309 + MMJJ_RS00285 0.75 -1.8
55,309 + MMJJ_RS00285 0.75 -1.9
55,309 + MMJJ_RS00285 0.75 -0.3
55,309 + MMJJ_RS00285 0.75 -0.1
55,309 + MMJJ_RS00285 0.75 -1.1
55,309 + -0.4
55,309 + MMJJ_RS00285 0.75 -3.4
55,330 - MMJJ_RS00285 0.79 -1.1
55,330 - MMJJ_RS00285 0.79 -1.0
55,330 - MMJJ_RS00285 0.79 -0.5
55,355 - MMJJ_RS00285 0.84 -1.3
55,356 + MMJJ_RS00285 0.84 -1.4
55,377 - MMJJ_RS00285 0.89 -0.7
55,383 + MMJJ_RS00285 0.90 -1.9
55,383 + MMJJ_RS00285 0.90 -1.2
55,434 + -1.1
55,436 - -1.7
55,446 + -0.1
55,466 + +0.6
55,482 - -0.1
55,485 - +1.7
55,487 - +0.1
55,487 - -0.1
55,487 - -0.0
55,487 - -0.3
55,488 + -0.0
55,488 + +0.1
55,488 + +0.1
55,491 + -0.2
55,496 + +0.2
55,506 + -0.3
55,509 - +0.2
55,510 + +0.0
55,519 - -0.3
55,519 - -0.2
55,523 + -0.1
55,527 - +0.3
55,527 - -0.5
55,527 - -0.2
55,527 - -0.1
55,528 + +0.2
55,533 - +0.4
55,538 - +0.7
55,538 - +0.7
55,539 + +0.3
55,547 - -0.2
55,548 + -0.5
55,554 + -0.0
55,557 - -0.1
55,568 - -0.1
55,568 - +0.0
55,569 + +0.3
55,569 + +0.4
55,596 - -0.2
55,597 + +0.2
55,599 + -0.0
55,600 - -0.0
55,604 - -0.3
55,604 - -0.4
55,605 + +0.9
55,606 - +0.0
55,606 - -0.0
55,634 - -0.4
55,635 + -0.4
55,635 + +0.5
55,644 - +0.7
55,645 + +0.3
55,646 - +0.6
55,646 - -0.2
55,646 - -0.5
55,646 - -0.1
55,647 + +0.1
55,647 + +0.5
55,682 + -0.9
55,720 - +0.3
55,766 - -0.0
55,994 + MMJJ_RS00290 0.27 -0.1
55,998 - MMJJ_RS00290 0.28 -0.4
55,998 - MMJJ_RS00290 0.28 +0.6
55,999 + MMJJ_RS00290 0.28 -0.3
55,999 + MMJJ_RS00290 0.28 -0.4
56,025 + MMJJ_RS00290 0.30 +0.6
56,025 + MMJJ_RS00290 0.30 -0.0
56,040 - MMJJ_RS00290 0.32 -0.1
56,062 + MMJJ_RS00290 0.34 -0.1
56,097 - MMJJ_RS00290 0.37 +0.2
56,097 - MMJJ_RS00290 0.37 -0.4
56,098 + MMJJ_RS00290 0.37 -0.0
56,102 - MMJJ_RS00290 0.38 +0.3
56,102 - MMJJ_RS00290 0.38 +0.3
56,103 + MMJJ_RS00290 0.38 +0.0
56,103 + MMJJ_RS00290 0.38 -0.3
56,132 + MMJJ_RS00290 0.40 +0.1
56,242 - MMJJ_RS00290 0.51 +0.6
56,242 - MMJJ_RS00290 0.51 -0.2
56,256 + MMJJ_RS00290 0.52 -0.7
56,262 - MMJJ_RS00290 0.53 +0.0
56,267 + MMJJ_RS00290 0.53 -0.2
56,272 - MMJJ_RS00290 0.54 +0.3
56,272 - MMJJ_RS00290 0.54 -0.2
56,273 + MMJJ_RS00290 0.54 +0.2
56,371 - MMJJ_RS00290 0.63 +0.4
56,372 + MMJJ_RS00290 0.63 -0.2
56,397 - MMJJ_RS00290 0.66 -0.1
56,397 - MMJJ_RS00290 0.66 -0.6
56,397 - MMJJ_RS00290 0.66 -0.2
56,398 + MMJJ_RS00290 0.66 -0.0
56,398 + MMJJ_RS00290 0.66 +0.3
56,398 + MMJJ_RS00290 0.66 -0.2
56,406 - MMJJ_RS00290 0.67 -0.3
56,411 - MMJJ_RS00290 0.67 +0.1
56,412 + MMJJ_RS00290 0.67 -0.2

Or see this region's nucleotide sequence