Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03165

Experiment: Formate 50 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03160 and MMJJ_RS03165 are separated by 18 nucleotidesMMJJ_RS03165 and MMJJ_RS03170 are separated by 37 nucleotidesMMJJ_RS03170 and MMJJ_RS03175 are separated by 9 nucleotides MMJJ_RS03160: MMJJ_RS03160 - winged helix-turn-helix transcriptional regulator, at 596,958 to 598,319 _RS03160 MMJJ_RS03165: MMJJ_RS03165 - methionine synthase, at 598,338 to 599,276 _RS03165 MMJJ_RS03170: MMJJ_RS03170 - DUF5612 domain-containing protein, at 599,314 to 599,967 _RS03170 MMJJ_RS03175: MMJJ_RS03175 - zinc metalloprotease HtpX, at 599,977 to 600,834 _RS03175 Position (kb) 598 599 600Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 597.363 kb on + strand, within MMJJ_RS03160at 597.383 kb on - strand, within MMJJ_RS03160at 597.384 kb on + strand, within MMJJ_RS03160at 597.393 kb on - strand, within MMJJ_RS03160at 597.406 kb on + strand, within MMJJ_RS03160at 597.420 kb on - strand, within MMJJ_RS03160at 597.440 kb on - strand, within MMJJ_RS03160at 597.451 kb on + strand, within MMJJ_RS03160at 597.613 kb on + strand, within MMJJ_RS03160at 597.614 kb on - strand, within MMJJ_RS03160at 597.615 kb on + strand, within MMJJ_RS03160at 597.646 kb on + strand, within MMJJ_RS03160at 597.709 kb on + strand, within MMJJ_RS03160at 597.717 kb on - strand, within MMJJ_RS03160at 597.717 kb on - strand, within MMJJ_RS03160at 597.717 kb on - strand, within MMJJ_RS03160at 597.718 kb on + strand, within MMJJ_RS03160at 597.718 kb on + strand, within MMJJ_RS03160at 597.720 kb on - strand, within MMJJ_RS03160at 597.721 kb on + strand, within MMJJ_RS03160at 597.721 kb on + strand, within MMJJ_RS03160at 597.724 kb on - strand, within MMJJ_RS03160at 597.724 kb on - strand, within MMJJ_RS03160at 597.725 kb on + strand, within MMJJ_RS03160at 597.729 kb on - strand, within MMJJ_RS03160at 597.730 kb on + strand, within MMJJ_RS03160at 597.731 kb on - strand, within MMJJ_RS03160at 597.731 kb on - strand, within MMJJ_RS03160at 597.746 kb on + strand, within MMJJ_RS03160at 597.762 kb on - strand, within MMJJ_RS03160at 597.781 kb on + strand, within MMJJ_RS03160at 597.781 kb on + strand, within MMJJ_RS03160at 597.786 kb on - strand, within MMJJ_RS03160at 597.789 kb on + strand, within MMJJ_RS03160at 597.795 kb on + strand, within MMJJ_RS03160at 597.813 kb on + strand, within MMJJ_RS03160at 597.813 kb on + strand, within MMJJ_RS03160at 597.814 kb on - strand, within MMJJ_RS03160at 597.828 kb on - strand, within MMJJ_RS03160at 597.828 kb on - strand, within MMJJ_RS03160at 597.830 kb on - strand, within MMJJ_RS03160at 597.918 kb on - strand, within MMJJ_RS03160at 597.918 kb on - strand, within MMJJ_RS03160at 597.924 kb on + strand, within MMJJ_RS03160at 597.925 kb on - strand, within MMJJ_RS03160at 597.925 kb on - strand, within MMJJ_RS03160at 597.926 kb on + strand, within MMJJ_RS03160at 597.926 kb on + strand, within MMJJ_RS03160at 597.927 kb on - strand, within MMJJ_RS03160at 597.927 kb on - strand, within MMJJ_RS03160at 597.927 kb on - strand, within MMJJ_RS03160at 597.928 kb on + strand, within MMJJ_RS03160at 597.972 kb on + strand, within MMJJ_RS03160at 597.979 kb on + strand, within MMJJ_RS03160at 598.053 kb on + strand, within MMJJ_RS03160at 598.071 kb on - strand, within MMJJ_RS03160at 598.088 kb on - strand, within MMJJ_RS03160at 598.089 kb on + strand, within MMJJ_RS03160at 598.121 kb on - strand, within MMJJ_RS03160at 598.121 kb on - strand, within MMJJ_RS03160at 598.121 kb on - strand, within MMJJ_RS03160at 598.122 kb on + strand, within MMJJ_RS03160at 598.122 kb on + strand, within MMJJ_RS03160at 598.124 kb on + strand, within MMJJ_RS03160at 598.127 kb on - strand, within MMJJ_RS03160at 598.128 kb on + strand, within MMJJ_RS03160at 598.128 kb on + strand, within MMJJ_RS03160at 598.204 kb on + strandat 598.210 kb on - strandat 598.212 kb on - strandat 598.213 kb on + strandat 598.213 kb on + strandat 598.213 kb on + strandat 598.255 kb on + strandat 598.281 kb on - strandat 598.281 kb on - strandat 598.285 kb on - strandat 598.286 kb on + strandat 598.286 kb on + strandat 598.293 kb on + strandat 598.295 kb on + strandat 598.299 kb on + strandat 598.322 kb on - strandat 598.322 kb on - strandat 598.322 kb on - strandat 598.323 kb on + strandat 598.323 kb on + strandat 598.327 kb on - strandat 598.383 kb on + strandat 598.458 kb on - strand, within MMJJ_RS03165at 598.663 kb on + strand, within MMJJ_RS03165at 599.309 kb on - strandat 599.337 kb on - strandat 599.337 kb on - strandat 599.337 kb on - strandat 599.338 kb on + strandat 599.411 kb on + strand, within MMJJ_RS03170at 599.414 kb on + strand, within MMJJ_RS03170at 599.455 kb on - strand, within MMJJ_RS03170at 599.623 kb on - strand, within MMJJ_RS03170at 599.624 kb on + strand, within MMJJ_RS03170at 599.687 kb on + strand, within MMJJ_RS03170at 599.722 kb on + strand, within MMJJ_RS03170at 599.831 kb on - strand, within MMJJ_RS03170at 599.831 kb on - strand, within MMJJ_RS03170at 599.832 kb on + strand, within MMJJ_RS03170at 599.832 kb on + strand, within MMJJ_RS03170at 599.836 kb on - strand, within MMJJ_RS03170at 599.836 kb on - strand, within MMJJ_RS03170at 599.845 kb on + strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.873 kb on - strand, within MMJJ_RS03170at 599.874 kb on + strand, within MMJJ_RS03170at 599.874 kb on + strand, within MMJJ_RS03170at 599.878 kb on - strand, within MMJJ_RS03170at 599.878 kb on - strand, within MMJJ_RS03170at 599.891 kb on + strand, within MMJJ_RS03170at 599.902 kb on - strandat 599.916 kb on - strandat 599.916 kb on - strandat 599.917 kb on + strandat 599.923 kb on - strandat 599.923 kb on - strandat 599.923 kb on - strandat 599.924 kb on + strandat 599.924 kb on + strandat 599.925 kb on - strandat 599.929 kb on - strandat 599.930 kb on + strandat 599.930 kb on + strandat 599.948 kb on + strandat 599.948 kb on + strandat 599.953 kb on + strandat 599.953 kb on + strandat 599.983 kb on - strandat 599.987 kb on - strandat 600.056 kb on + strandat 600.088 kb on - strand, within MMJJ_RS03175at 600.089 kb on + strand, within MMJJ_RS03175at 600.222 kb on + strand, within MMJJ_RS03175at 600.222 kb on + strand, within MMJJ_RS03175

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate 50 mM hypophosphite
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597,363 + MMJJ_RS03160 0.30 -0.6
597,383 - MMJJ_RS03160 0.31 -2.2
597,384 + MMJJ_RS03160 0.31 -2.3
597,393 - MMJJ_RS03160 0.32 -1.4
597,406 + MMJJ_RS03160 0.33 -0.2
597,420 - MMJJ_RS03160 0.34 -3.6
597,440 - MMJJ_RS03160 0.35 -3.7
597,451 + MMJJ_RS03160 0.36 -2.0
597,613 + MMJJ_RS03160 0.48 -2.7
597,614 - MMJJ_RS03160 0.48 -0.6
597,615 + MMJJ_RS03160 0.48 -0.2
597,646 + MMJJ_RS03160 0.51 +0.4
597,709 + MMJJ_RS03160 0.55 -2.8
597,717 - MMJJ_RS03160 0.56 -2.6
597,717 - MMJJ_RS03160 0.56 -3.9
597,717 - MMJJ_RS03160 0.56 +0.2
597,718 + MMJJ_RS03160 0.56 -1.1
597,718 + MMJJ_RS03160 0.56 -1.0
597,720 - MMJJ_RS03160 0.56 +2.4
597,721 + MMJJ_RS03160 0.56 -0.5
597,721 + MMJJ_RS03160 0.56 -2.6
597,724 - MMJJ_RS03160 0.56 -2.0
597,724 - MMJJ_RS03160 0.56 -2.6
597,725 + MMJJ_RS03160 0.56 -1.5
597,729 - MMJJ_RS03160 0.57 -4.5
597,730 + MMJJ_RS03160 0.57 -2.7
597,731 - MMJJ_RS03160 0.57 -1.8
597,731 - MMJJ_RS03160 0.57 -2.3
597,746 + MMJJ_RS03160 0.58 -2.0
597,762 - MMJJ_RS03160 0.59 -2.6
597,781 + MMJJ_RS03160 0.60 -0.6
597,781 + MMJJ_RS03160 0.60 -2.7
597,786 - MMJJ_RS03160 0.61 -1.9
597,789 + MMJJ_RS03160 0.61 -2.3
597,795 + MMJJ_RS03160 0.61 +0.8
597,813 + MMJJ_RS03160 0.63 -2.4
597,813 + MMJJ_RS03160 0.63 -4.0
597,814 - MMJJ_RS03160 0.63 -4.2
597,828 - MMJJ_RS03160 0.64 -3.5
597,828 - MMJJ_RS03160 0.64 -4.8
597,830 - MMJJ_RS03160 0.64 -1.9
597,918 - MMJJ_RS03160 0.70 +0.8
597,918 - MMJJ_RS03160 0.70 -0.9
597,924 + MMJJ_RS03160 0.71 -2.2
597,925 - MMJJ_RS03160 0.71 -2.2
597,925 - MMJJ_RS03160 0.71 -3.6
597,926 + MMJJ_RS03160 0.71 +0.4
597,926 + MMJJ_RS03160 0.71 -0.5
597,927 - MMJJ_RS03160 0.71 +0.0
597,927 - MMJJ_RS03160 0.71 -1.9
597,927 - MMJJ_RS03160 0.71 -4.0
597,928 + MMJJ_RS03160 0.71 -2.2
597,972 + MMJJ_RS03160 0.74 -0.6
597,979 + MMJJ_RS03160 0.75 -3.7
598,053 + MMJJ_RS03160 0.80 -1.8
598,071 - MMJJ_RS03160 0.82 -0.1
598,088 - MMJJ_RS03160 0.83 -3.1
598,089 + MMJJ_RS03160 0.83 -0.1
598,121 - MMJJ_RS03160 0.85 -2.6
598,121 - MMJJ_RS03160 0.85 -2.9
598,121 - MMJJ_RS03160 0.85 -4.2
598,122 + MMJJ_RS03160 0.85 -3.1
598,122 + MMJJ_RS03160 0.85 -2.9
598,124 + MMJJ_RS03160 0.86 +0.0
598,127 - MMJJ_RS03160 0.86 -2.8
598,128 + MMJJ_RS03160 0.86 -1.3
598,128 + MMJJ_RS03160 0.86 -1.6
598,204 + -2.1
598,210 - -1.9
598,212 - +1.4
598,213 + -3.8
598,213 + -1.3
598,213 + -2.0
598,255 + -2.6
598,281 - -2.6
598,281 - -2.5
598,285 - -5.0
598,286 + -1.9
598,286 + -1.0
598,293 + -1.7
598,295 + -2.8
598,299 + -3.1
598,322 - -2.3
598,322 - -4.0
598,322 - -2.2
598,323 + +0.8
598,323 + -3.4
598,327 - +0.0
598,383 + -1.1
598,458 - MMJJ_RS03165 0.13 -2.3
598,663 + MMJJ_RS03165 0.35 -1.1
599,309 - -0.8
599,337 - -2.8
599,337 - -1.5
599,337 - -0.2
599,338 + -1.8
599,411 + MMJJ_RS03170 0.15 -3.6
599,414 + MMJJ_RS03170 0.15 -2.5
599,455 - MMJJ_RS03170 0.22 -1.8
599,623 - MMJJ_RS03170 0.47 -1.8
599,624 + MMJJ_RS03170 0.47 -2.9
599,687 + MMJJ_RS03170 0.57 -1.6
599,722 + MMJJ_RS03170 0.62 -3.5
599,831 - MMJJ_RS03170 0.79 -0.9
599,831 - MMJJ_RS03170 0.79 -0.8
599,832 + MMJJ_RS03170 0.79 -3.6
599,832 + MMJJ_RS03170 0.79 -1.7
599,836 - MMJJ_RS03170 0.80 -3.4
599,836 - MMJJ_RS03170 0.80 -1.4
599,845 + MMJJ_RS03170 0.81 -0.6
599,873 - MMJJ_RS03170 0.85 -1.6
599,873 - MMJJ_RS03170 0.85 -1.0
599,873 - MMJJ_RS03170 0.85 -0.6
599,873 - MMJJ_RS03170 0.85 -0.3
599,874 + MMJJ_RS03170 0.86 -2.3
599,874 + MMJJ_RS03170 0.86 -2.6
599,878 - MMJJ_RS03170 0.86 -1.4
599,878 - MMJJ_RS03170 0.86 -0.5
599,891 + MMJJ_RS03170 0.88 -1.7
599,902 - -2.2
599,916 - -2.5
599,916 - -0.5
599,917 + -1.6
599,923 - -0.9
599,923 - -2.1
599,923 - -1.0
599,924 + -2.3
599,924 + -3.1
599,925 - -0.7
599,929 - -1.6
599,930 + -3.2
599,930 + -0.6
599,948 + -1.9
599,948 + -0.2
599,953 + -5.7
599,953 + -4.6
599,983 - +0.8
599,987 - -1.3
600,056 + -1.3
600,088 - MMJJ_RS03175 0.13 -0.8
600,089 + MMJJ_RS03175 0.13 -2.5
600,222 + MMJJ_RS03175 0.29 -1.7
600,222 + MMJJ_RS03175 0.29 -2.5

Or see this region's nucleotide sequence