Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02205

Experiment: Formate 50 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02195 and MMJJ_RS02200 are separated by 14 nucleotidesMMJJ_RS02200 and MMJJ_RS02205 are separated by 33 nucleotidesMMJJ_RS02205 and MMJJ_RS02210 are separated by 125 nucleotidesMMJJ_RS02210 and MMJJ_RS02215 are separated by 36 nucleotides MMJJ_RS02195: MMJJ_RS02195 - AmmeMemoRadiSam system radical SAM enzyme, at 417,306 to 418,316 _RS02195 MMJJ_RS02200: MMJJ_RS02200 - chorismate pyruvate-lyase family protein, at 418,331 to 418,846 _RS02200 MMJJ_RS02205: MMJJ_RS02205 - hypothetical protein, at 418,880 to 419,482 _RS02205 MMJJ_RS02210: MMJJ_RS02210 - phosphoserine phosphatase SerB, at 419,608 to 420,249 _RS02210 MMJJ_RS02215: MMJJ_RS02215 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 420,286 to 421,026 _RS02215 Position (kb) 418 419 420Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 417.916 kb on + strand, within MMJJ_RS02195at 417.916 kb on + strand, within MMJJ_RS02195at 417.930 kb on + strand, within MMJJ_RS02195at 417.931 kb on - strand, within MMJJ_RS02195at 417.932 kb on + strand, within MMJJ_RS02195at 417.936 kb on + strand, within MMJJ_RS02195at 418.055 kb on - strand, within MMJJ_RS02195at 418.067 kb on - strand, within MMJJ_RS02195at 418.068 kb on + strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.120 kb on + strand, within MMJJ_RS02195at 418.215 kb on - strand, within MMJJ_RS02195at 418.394 kb on - strand, within MMJJ_RS02200at 418.394 kb on - strandat 418.396 kb on - strand, within MMJJ_RS02200at 418.396 kb on - strand, within MMJJ_RS02200at 418.396 kb on - strand, within MMJJ_RS02200at 418.397 kb on + strand, within MMJJ_RS02200at 418.401 kb on - strand, within MMJJ_RS02200at 418.401 kb on - strand, within MMJJ_RS02200at 418.402 kb on + strand, within MMJJ_RS02200at 418.402 kb on + strand, within MMJJ_RS02200at 418.476 kb on + strand, within MMJJ_RS02200at 418.574 kb on - strand, within MMJJ_RS02200at 418.574 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.577 kb on + strand, within MMJJ_RS02200at 418.577 kb on + strand, within MMJJ_RS02200at 418.577 kb on + strand, within MMJJ_RS02200at 418.580 kb on - strand, within MMJJ_RS02200at 418.580 kb on - strand, within MMJJ_RS02200at 418.580 kb on - strand, within MMJJ_RS02200at 418.581 kb on + strand, within MMJJ_RS02200at 418.581 kb on + strand, within MMJJ_RS02200at 418.590 kb on + strand, within MMJJ_RS02200at 418.620 kb on - strand, within MMJJ_RS02200at 418.621 kb on + strand, within MMJJ_RS02200at 418.621 kb on + strand, within MMJJ_RS02200at 418.621 kb on + strand, within MMJJ_RS02200at 418.622 kb on - strand, within MMJJ_RS02200at 418.622 kb on - strand, within MMJJ_RS02200at 418.622 kb on - strand, within MMJJ_RS02200at 418.623 kb on + strand, within MMJJ_RS02200at 418.641 kb on + strand, within MMJJ_RS02200at 418.641 kb on + strand, within MMJJ_RS02200at 418.653 kb on + strand, within MMJJ_RS02200at 418.668 kb on + strand, within MMJJ_RS02200at 418.679 kb on - strand, within MMJJ_RS02200at 418.689 kb on - strand, within MMJJ_RS02200at 418.793 kb on - strand, within MMJJ_RS02200at 418.811 kb on - strandat 418.834 kb on + strandat 418.857 kb on + strandat 418.923 kb on + strandat 418.923 kb on + strandat 418.932 kb on - strandat 418.934 kb on - strandat 418.955 kb on - strand, within MMJJ_RS02205at 418.956 kb on + strand, within MMJJ_RS02205at 418.974 kb on - strand, within MMJJ_RS02205at 419.009 kb on - strand, within MMJJ_RS02205at 419.010 kb on + strand, within MMJJ_RS02205at 419.117 kb on - strand, within MMJJ_RS02205at 419.159 kb on + strand, within MMJJ_RS02205at 419.182 kb on - strand, within MMJJ_RS02205at 419.183 kb on + strand, within MMJJ_RS02205at 419.183 kb on + strand, within MMJJ_RS02205at 419.183 kb on + strand, within MMJJ_RS02205at 419.194 kb on - strand, within MMJJ_RS02205at 419.194 kb on - strand, within MMJJ_RS02205at 419.206 kb on - strand, within MMJJ_RS02205at 419.207 kb on + strand, within MMJJ_RS02205at 419.213 kb on - strand, within MMJJ_RS02205at 419.238 kb on - strand, within MMJJ_RS02205at 419.245 kb on - strand, within MMJJ_RS02205at 419.245 kb on - strand, within MMJJ_RS02205at 419.245 kb on - strand, within MMJJ_RS02205at 419.246 kb on + strand, within MMJJ_RS02205at 419.246 kb on + strand, within MMJJ_RS02205at 419.250 kb on + strand, within MMJJ_RS02205at 419.298 kb on + strand, within MMJJ_RS02205at 419.309 kb on + strand, within MMJJ_RS02205at 419.333 kb on - strand, within MMJJ_RS02205at 419.335 kb on - strand, within MMJJ_RS02205at 419.336 kb on + strand, within MMJJ_RS02205at 419.339 kb on - strand, within MMJJ_RS02205at 419.339 kb on - strand, within MMJJ_RS02205at 419.340 kb on + strand, within MMJJ_RS02205at 419.340 kb on + strand, within MMJJ_RS02205at 419.340 kb on + strand, within MMJJ_RS02205at 419.341 kb on - strand, within MMJJ_RS02205at 419.342 kb on + strand, within MMJJ_RS02205at 419.352 kb on + strand, within MMJJ_RS02205at 419.441 kb on + strandat 419.441 kb on + strandat 419.441 kb on + strandat 419.444 kb on - strandat 419.504 kb on - strandat 419.504 kb on - strandat 419.505 kb on + strandat 419.510 kb on + strandat 419.510 kb on + strandat 419.510 kb on + strandat 419.513 kb on + strandat 419.513 kb on + strandat 419.527 kb on - strandat 419.528 kb on + strandat 419.528 kb on + strandat 419.532 kb on - strandat 419.533 kb on + strandat 419.533 kb on + strandat 419.533 kb on + strandat 419.534 kb on - strandat 419.534 kb on - strandat 419.537 kb on + strandat 419.537 kb on + strandat 419.550 kb on - strandat 419.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate 50 mM hypophosphite
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417,916 + MMJJ_RS02195 0.60 -1.8
417,916 + MMJJ_RS02195 0.60 -3.4
417,930 + MMJJ_RS02195 0.62 -0.4
417,931 - MMJJ_RS02195 0.62 -0.5
417,932 + MMJJ_RS02195 0.62 -3.1
417,936 + MMJJ_RS02195 0.62 -2.2
418,055 - MMJJ_RS02195 0.74 -1.0
418,067 - MMJJ_RS02195 0.75 -1.8
418,068 + MMJJ_RS02195 0.75 -3.4
418,119 - MMJJ_RS02195 0.80 -1.0
418,119 - MMJJ_RS02195 0.80 -2.9
418,119 - MMJJ_RS02195 0.80 -1.9
418,119 - MMJJ_RS02195 0.80 -1.0
418,119 - MMJJ_RS02195 0.80 -1.8
418,120 + MMJJ_RS02195 0.81 -1.7
418,215 - MMJJ_RS02195 0.90 -1.0
418,394 - MMJJ_RS02200 0.12 -2.4
418,394 - -0.4
418,396 - MMJJ_RS02200 0.13 -3.0
418,396 - MMJJ_RS02200 0.13 -2.3
418,396 - MMJJ_RS02200 0.13 -2.3
418,397 + MMJJ_RS02200 0.13 -3.6
418,401 - MMJJ_RS02200 0.14 -2.1
418,401 - MMJJ_RS02200 0.14 -1.2
418,402 + MMJJ_RS02200 0.14 -2.4
418,402 + MMJJ_RS02200 0.14 -2.9
418,476 + MMJJ_RS02200 0.28 -1.5
418,574 - MMJJ_RS02200 0.47 -2.3
418,574 - MMJJ_RS02200 0.47 -2.5
418,576 - MMJJ_RS02200 0.47 -4.0
418,576 - MMJJ_RS02200 0.47 +0.5
418,576 - MMJJ_RS02200 0.47 -3.5
418,576 - MMJJ_RS02200 0.47 -2.0
418,577 + MMJJ_RS02200 0.48 -1.5
418,577 + MMJJ_RS02200 0.48 -1.9
418,577 + MMJJ_RS02200 0.48 -2.2
418,580 - MMJJ_RS02200 0.48 -0.6
418,580 - MMJJ_RS02200 0.48 -1.4
418,580 - MMJJ_RS02200 0.48 +0.9
418,581 + MMJJ_RS02200 0.48 -2.3
418,581 + MMJJ_RS02200 0.48 -2.2
418,590 + MMJJ_RS02200 0.50 -2.1
418,620 - MMJJ_RS02200 0.56 -2.7
418,621 + MMJJ_RS02200 0.56 -0.5
418,621 + MMJJ_RS02200 0.56 -1.6
418,621 + MMJJ_RS02200 0.56 -2.3
418,622 - MMJJ_RS02200 0.56 -1.2
418,622 - MMJJ_RS02200 0.56 -1.4
418,622 - MMJJ_RS02200 0.56 -0.7
418,623 + MMJJ_RS02200 0.57 -1.4
418,641 + MMJJ_RS02200 0.60 -1.2
418,641 + MMJJ_RS02200 0.60 -2.4
418,653 + MMJJ_RS02200 0.62 -1.9
418,668 + MMJJ_RS02200 0.65 -1.9
418,679 - MMJJ_RS02200 0.67 -2.2
418,689 - MMJJ_RS02200 0.69 -1.6
418,793 - MMJJ_RS02200 0.90 -1.8
418,811 - -1.6
418,834 + -2.9
418,857 + -1.3
418,923 + -2.2
418,923 + -1.6
418,932 - -1.6
418,934 - -1.6
418,955 - MMJJ_RS02205 0.12 -2.1
418,956 + MMJJ_RS02205 0.13 -3.3
418,974 - MMJJ_RS02205 0.16 -1.6
419,009 - MMJJ_RS02205 0.21 -1.6
419,010 + MMJJ_RS02205 0.22 -1.5
419,117 - MMJJ_RS02205 0.39 -2.2
419,159 + MMJJ_RS02205 0.46 -3.3
419,182 - MMJJ_RS02205 0.50 -2.1
419,183 + MMJJ_RS02205 0.50 -1.5
419,183 + MMJJ_RS02205 0.50 -1.4
419,183 + MMJJ_RS02205 0.50 -2.1
419,194 - MMJJ_RS02205 0.52 -2.1
419,194 - MMJJ_RS02205 0.52 -2.3
419,206 - MMJJ_RS02205 0.54 -1.8
419,207 + MMJJ_RS02205 0.54 -2.1
419,213 - MMJJ_RS02205 0.55 -2.6
419,238 - MMJJ_RS02205 0.59 -1.2
419,245 - MMJJ_RS02205 0.61 -1.6
419,245 - MMJJ_RS02205 0.61 -2.0
419,245 - MMJJ_RS02205 0.61 -1.2
419,246 + MMJJ_RS02205 0.61 -3.2
419,246 + MMJJ_RS02205 0.61 -2.4
419,250 + MMJJ_RS02205 0.61 -2.3
419,298 + MMJJ_RS02205 0.69 -2.2
419,309 + MMJJ_RS02205 0.71 -2.3
419,333 - MMJJ_RS02205 0.75 -1.5
419,335 - MMJJ_RS02205 0.75 -0.7
419,336 + MMJJ_RS02205 0.76 -1.9
419,339 - MMJJ_RS02205 0.76 -0.3
419,339 - MMJJ_RS02205 0.76 -2.2
419,340 + MMJJ_RS02205 0.76 -3.0
419,340 + MMJJ_RS02205 0.76 -2.3
419,340 + MMJJ_RS02205 0.76 -2.0
419,341 - MMJJ_RS02205 0.76 -1.4
419,342 + MMJJ_RS02205 0.77 -3.4
419,352 + MMJJ_RS02205 0.78 -2.3
419,441 + -2.1
419,441 + -1.5
419,441 + -1.1
419,444 - -1.5
419,504 - -0.7
419,504 - -0.8
419,505 + -0.1
419,510 + -2.0
419,510 + -2.1
419,510 + -1.9
419,513 + -1.7
419,513 + -1.0
419,527 - -0.3
419,528 + -2.1
419,528 + -1.4
419,532 - -0.1
419,533 + -1.1
419,533 + -1.1
419,533 + -1.3
419,534 - -1.1
419,534 - -0.3
419,537 + +0.3
419,537 + -0.5
419,550 - +0.1
419,585 - +0.1

Or see this region's nucleotide sequence