Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02185

Experiment: Formate 50 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02180 and MMJJ_RS02185 are separated by 61 nucleotidesMMJJ_RS02185 and MMJJ_RS02190 are separated by 216 nucleotides MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539 _RS02180 MMJJ_RS02185: MMJJ_RS02185 - TIGR00296 family protein, at 414,601 to 415,212 _RS02185 MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279 _RS02190 Position (kb) 414 415 416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 413.711 kb on + strand, within MMJJ_RS02180at 413.737 kb on + strand, within MMJJ_RS02180at 413.820 kb on - strand, within MMJJ_RS02180at 413.917 kb on - strand, within MMJJ_RS02180at 413.920 kb on + strand, within MMJJ_RS02180at 413.961 kb on + strand, within MMJJ_RS02180at 414.004 kb on + strand, within MMJJ_RS02180at 414.008 kb on - strand, within MMJJ_RS02180at 414.251 kb on - strand, within MMJJ_RS02180at 414.256 kb on + strand, within MMJJ_RS02180at 414.263 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.293 kb on - strand, within MMJJ_RS02180at 414.385 kb on + strand, within MMJJ_RS02180at 414.402 kb on - strand, within MMJJ_RS02180at 414.450 kb on - strandat 414.453 kb on - strandat 414.531 kb on - strandat 414.531 kb on - strandat 414.532 kb on + strandat 414.532 kb on + strandat 414.534 kb on + strandat 414.563 kb on + strandat 414.563 kb on + strandat 414.569 kb on + strandat 414.569 kb on + strandat 414.573 kb on - strandat 414.574 kb on + strandat 414.612 kb on - strandat 414.614 kb on - strandat 414.614 kb on - strandat 414.614 kb on - strandat 414.695 kb on - strand, within MMJJ_RS02185at 414.768 kb on - strandat 414.768 kb on - strand, within MMJJ_RS02185at 414.768 kb on - strand, within MMJJ_RS02185at 414.770 kb on - strand, within MMJJ_RS02185at 414.770 kb on - strand, within MMJJ_RS02185at 414.778 kb on + strand, within MMJJ_RS02185at 414.917 kb on + strand, within MMJJ_RS02185at 414.917 kb on + strand, within MMJJ_RS02185at 414.924 kb on - strand, within MMJJ_RS02185at 414.925 kb on + strand, within MMJJ_RS02185at 414.960 kb on - strand, within MMJJ_RS02185at 414.982 kb on - strand, within MMJJ_RS02185at 414.997 kb on - strand, within MMJJ_RS02185at 414.998 kb on + strand, within MMJJ_RS02185at 414.998 kb on + strand, within MMJJ_RS02185at 415.038 kb on - strand, within MMJJ_RS02185at 415.068 kb on - strand, within MMJJ_RS02185at 415.084 kb on - strand, within MMJJ_RS02185at 415.116 kb on + strand, within MMJJ_RS02185at 415.145 kb on + strand, within MMJJ_RS02185at 415.145 kb on + strand, within MMJJ_RS02185at 415.149 kb on + strand, within MMJJ_RS02185at 415.172 kb on - strandat 415.204 kb on - strandat 415.228 kb on + strandat 415.228 kb on + strandat 415.229 kb on - strandat 415.230 kb on + strandat 415.235 kb on + strandat 415.246 kb on - strandat 415.255 kb on - strandat 415.261 kb on + strandat 415.314 kb on - strandat 415.315 kb on + strandat 415.315 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.361 kb on - strandat 415.375 kb on + strandat 415.378 kb on - strandat 415.378 kb on - strandat 415.379 kb on + strandat 415.439 kb on - strandat 415.513 kb on - strandat 415.513 kb on - strandat 415.559 kb on - strandat 415.572 kb on - strandat 415.609 kb on + strandat 415.612 kb on - strandat 415.845 kb on - strand, within MMJJ_RS02190at 415.846 kb on + strand, within MMJJ_RS02190at 415.863 kb on - strand, within MMJJ_RS02190at 415.865 kb on - strand, within MMJJ_RS02190at 415.865 kb on - strand, within MMJJ_RS02190at 415.892 kb on + strand, within MMJJ_RS02190at 415.905 kb on - strand, within MMJJ_RS02190at 415.915 kb on - strand, within MMJJ_RS02190at 415.915 kb on - strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.917 kb on - strand, within MMJJ_RS02190at 415.917 kb on - strand, within MMJJ_RS02190at 415.918 kb on + strand, within MMJJ_RS02190at 415.918 kb on + strand, within MMJJ_RS02190at 415.921 kb on + strand, within MMJJ_RS02190at 415.939 kb on - strand, within MMJJ_RS02190at 416.012 kb on + strand, within MMJJ_RS02190at 416.044 kb on - strand, within MMJJ_RS02190at 416.079 kb on - strand, within MMJJ_RS02190at 416.082 kb on - strand, within MMJJ_RS02190at 416.158 kb on - strand, within MMJJ_RS02190at 416.159 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.178 kb on + strand, within MMJJ_RS02190at 416.178 kb on + strand, within MMJJ_RS02190at 416.182 kb on + strand, within MMJJ_RS02190

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate 50 mM hypophosphite
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413,711 + MMJJ_RS02180 0.36 +0.2
413,737 + MMJJ_RS02180 0.38 +0.6
413,820 - MMJJ_RS02180 0.44 -1.0
413,917 - MMJJ_RS02180 0.52 +0.1
413,920 + MMJJ_RS02180 0.52 -0.3
413,961 + MMJJ_RS02180 0.55 +1.2
414,004 + MMJJ_RS02180 0.59 +0.8
414,008 - MMJJ_RS02180 0.59 -0.1
414,251 - MMJJ_RS02180 0.78 +0.1
414,256 + MMJJ_RS02180 0.78 -0.3
414,263 - MMJJ_RS02180 0.79 +0.4
414,291 - MMJJ_RS02180 0.81 +0.1
414,291 - MMJJ_RS02180 0.81 +0.6
414,291 - MMJJ_RS02180 0.81 -0.1
414,291 - MMJJ_RS02180 0.81 -0.0
414,293 - MMJJ_RS02180 0.81 -0.9
414,385 + MMJJ_RS02180 0.88 -0.4
414,402 - MMJJ_RS02180 0.89 +0.5
414,450 - -0.5
414,453 - -0.0
414,531 - -0.1
414,531 - +0.3
414,532 + -0.0
414,532 + -0.1
414,534 + +0.2
414,563 + -0.5
414,563 + +0.3
414,569 + -0.4
414,569 + -0.4
414,573 - -0.3
414,574 + +0.1
414,612 - -1.0
414,614 - -0.3
414,614 - -1.4
414,614 - -0.1
414,695 - MMJJ_RS02185 0.15 -0.2
414,768 - -0.2
414,768 - MMJJ_RS02185 0.27 +0.6
414,768 - MMJJ_RS02185 0.27 +0.4
414,770 - MMJJ_RS02185 0.28 +0.2
414,770 - MMJJ_RS02185 0.28 +0.6
414,778 + MMJJ_RS02185 0.29 +0.4
414,917 + MMJJ_RS02185 0.52 +0.1
414,917 + MMJJ_RS02185 0.52 -0.3
414,924 - MMJJ_RS02185 0.53 -0.1
414,925 + MMJJ_RS02185 0.53 -0.0
414,960 - MMJJ_RS02185 0.59 +0.1
414,982 - MMJJ_RS02185 0.62 -0.2
414,997 - MMJJ_RS02185 0.65 +0.5
414,998 + MMJJ_RS02185 0.65 +0.6
414,998 + MMJJ_RS02185 0.65 +0.2
415,038 - MMJJ_RS02185 0.71 +0.5
415,068 - MMJJ_RS02185 0.76 -0.3
415,084 - MMJJ_RS02185 0.79 +0.0
415,116 + MMJJ_RS02185 0.84 +0.3
415,145 + MMJJ_RS02185 0.89 +0.3
415,145 + MMJJ_RS02185 0.89 -0.8
415,149 + MMJJ_RS02185 0.90 -0.1
415,172 - +0.1
415,204 - +0.1
415,228 + +0.4
415,228 + -0.4
415,229 - +0.1
415,230 + +0.3
415,235 + -0.1
415,246 - +0.7
415,255 - +0.4
415,261 + +0.2
415,314 - -0.0
415,315 + -0.3
415,315 + -0.4
415,347 + +0.0
415,347 + -0.2
415,347 + +0.1
415,347 + +0.6
415,361 - +0.1
415,375 + -0.1
415,378 - +0.2
415,378 - -0.1
415,379 + -0.2
415,439 - -0.3
415,513 - -2.0
415,513 - -0.6
415,559 - -2.3
415,572 - -3.4
415,609 + -0.3
415,612 - -2.2
415,845 - MMJJ_RS02190 0.22 -1.2
415,846 + MMJJ_RS02190 0.23 -3.5
415,863 - MMJJ_RS02190 0.23 -2.9
415,865 - MMJJ_RS02190 0.24 -2.5
415,865 - MMJJ_RS02190 0.24 -2.0
415,892 + MMJJ_RS02190 0.25 -2.4
415,905 - MMJJ_RS02190 0.26 -1.3
415,915 - MMJJ_RS02190 0.26 -2.3
415,915 - MMJJ_RS02190 0.26 -2.3
415,916 + MMJJ_RS02190 0.26 -0.7
415,916 + MMJJ_RS02190 0.26 -3.4
415,916 + MMJJ_RS02190 0.26 -1.2
415,917 - MMJJ_RS02190 0.26 -2.2
415,917 - MMJJ_RS02190 0.26 -0.6
415,918 + MMJJ_RS02190 0.26 -2.3
415,918 + MMJJ_RS02190 0.26 -1.6
415,921 + MMJJ_RS02190 0.27 -2.7
415,939 - MMJJ_RS02190 0.28 -2.4
416,012 + MMJJ_RS02190 0.31 -1.9
416,044 - MMJJ_RS02190 0.33 -1.7
416,079 - MMJJ_RS02190 0.35 -2.6
416,082 - MMJJ_RS02190 0.35 -1.3
416,158 - MMJJ_RS02190 0.39 -2.8
416,159 + MMJJ_RS02190 0.39 -3.9
416,161 + MMJJ_RS02190 0.40 -1.6
416,161 + MMJJ_RS02190 0.40 -2.1
416,161 + MMJJ_RS02190 0.40 -1.0
416,177 - MMJJ_RS02190 0.40 -3.3
416,177 - MMJJ_RS02190 0.40 -1.9
416,177 - MMJJ_RS02190 0.40 -3.2
416,178 + MMJJ_RS02190 0.40 -3.8
416,178 + MMJJ_RS02190 0.40 -2.1
416,182 + MMJJ_RS02190 0.41 -2.7

Or see this region's nucleotide sequence