Experiment: Formate 50 mM hypophosphite
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01935 and MMJJ_RS01940 are separated by 17 nucleotides MMJJ_RS01940 and MMJJ_RS01945 are separated by 76 nucleotides MMJJ_RS01945 and MMJJ_RS01950 overlap by 4 nucleotides
MMJJ_RS01935: MMJJ_RS01935 - O-phosphoseryl-tRNA(Sec) selenium transferase, at 371,182 to 372,492
_RS01935
MMJJ_RS01940: MMJJ_RS01940 - hypothetical protein, at 372,510 to 373,076
_RS01940
MMJJ_RS01945: MMJJ_RS01945 - cell division ATPase MinD, at 373,153 to 373,938
_RS01945
MMJJ_RS01950: MMJJ_RS01950 - hypothetical protein, at 373,935 to 374,117
_RS01950
Position (kb) 372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 371.657 kb on - strand, within MMJJ_RS01935 at 371.718 kb on - strand, within MMJJ_RS01935 at 371.758 kb on - strand, within MMJJ_RS01935 at 372.021 kb on + strand, within MMJJ_RS01935 at 372.050 kb on + strand, within MMJJ_RS01935 at 372.071 kb on - strand, within MMJJ_RS01935 at 372.126 kb on - strand, within MMJJ_RS01935 at 372.386 kb on + strand at 372.398 kb on + strand at 372.399 kb on - strand at 372.417 kb on + strand at 372.490 kb on - strand at 372.515 kb on + strand at 372.524 kb on - strand at 372.531 kb on - strand at 372.532 kb on + strand at 372.673 kb on - strand, within MMJJ_RS01940 at 372.680 kb on + strand, within MMJJ_RS01940 at 372.689 kb on - strand, within MMJJ_RS01940 at 372.746 kb on - strand, within MMJJ_RS01940 at 372.757 kb on - strand, within MMJJ_RS01940 at 372.758 kb on + strand, within MMJJ_RS01940 at 372.758 kb on + strand, within MMJJ_RS01940 at 372.758 kb on + strand, within MMJJ_RS01940 at 372.837 kb on - strand, within MMJJ_RS01940 at 372.837 kb on - strand, within MMJJ_RS01940 at 372.838 kb on + strand, within MMJJ_RS01940 at 372.839 kb on - strand, within MMJJ_RS01940 at 372.839 kb on - strand, within MMJJ_RS01940 at 372.839 kb on - strand, within MMJJ_RS01940 at 372.840 kb on + strand, within MMJJ_RS01940 at 372.912 kb on + strand, within MMJJ_RS01940 at 372.917 kb on - strand, within MMJJ_RS01940 at 372.924 kb on + strand, within MMJJ_RS01940 at 372.934 kb on + strand, within MMJJ_RS01940 at 372.936 kb on + strand, within MMJJ_RS01940 at 372.958 kb on - strand, within MMJJ_RS01940 at 372.965 kb on - strand, within MMJJ_RS01940 at 372.965 kb on - strand, within MMJJ_RS01940 at 372.968 kb on - strand, within MMJJ_RS01940 at 372.976 kb on - strand, within MMJJ_RS01940 at 372.990 kb on - strand, within MMJJ_RS01940 at 372.991 kb on + strand, within MMJJ_RS01940 at 372.991 kb on + strand, within MMJJ_RS01940 at 372.991 kb on + strand, within MMJJ_RS01940 at 372.991 kb on + strand, within MMJJ_RS01940 at 373.023 kb on + strand at 373.023 kb on + strand at 373.023 kb on + strand at 373.027 kb on + strand at 373.028 kb on - strand at 373.028 kb on - strand at 373.028 kb on - strand at 373.028 kb on - strand at 373.029 kb on + strand at 373.029 kb on + strand at 373.029 kb on + strand at 373.029 kb on + strand at 373.029 kb on + strand at 373.083 kb on - strand at 373.083 kb on - strand at 373.083 kb on - strand at 373.084 kb on + strand at 373.084 kb on + strand at 373.085 kb on - strand at 373.085 kb on - strand at 373.086 kb on + strand at 373.086 kb on + strand at 373.088 kb on + strand at 373.088 kb on + strand at 373.090 kb on - strand at 373.090 kb on - strand at 373.090 kb on - strand at 373.091 kb on + strand at 373.091 kb on + strand at 373.091 kb on + strand at 373.102 kb on + strand at 373.102 kb on + strand at 373.110 kb on + strand at 373.110 kb on + strand at 373.114 kb on - strand at 373.114 kb on - strand at 373.114 kb on - strand at 373.114 kb on - strand at 373.114 kb on - strand at 373.115 kb on + strand at 373.115 kb on + strand at 373.115 kb on + strand at 373.115 kb on + strand at 373.116 kb on - strand at 373.116 kb on - strand at 373.116 kb on - strand at 373.116 kb on - strand at 373.116 kb on - strand at 373.116 kb on - strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.117 kb on + strand at 373.118 kb on - strand at 373.119 kb on + strand at 373.119 kb on + strand at 373.119 kb on + strand at 373.119 kb on + strand at 373.119 kb on + strand at 373.119 kb on + strand at 373.124 kb on - strand at 373.124 kb on - strand at 373.124 kb on - strand at 373.124 kb on - strand at 373.125 kb on + strand at 373.125 kb on + strand at 373.125 kb on + strand at 373.129 kb on + strand at 373.161 kb on + strand at 373.254 kb on + strand, within MMJJ_RS01945 at 373.272 kb on - strand, within MMJJ_RS01945 at 373.272 kb on - strand, within MMJJ_RS01945 at 373.297 kb on + strand, within MMJJ_RS01945 at 373.297 kb on + strand, within MMJJ_RS01945 at 373.328 kb on - strand, within MMJJ_RS01945 at 373.328 kb on - strand, within MMJJ_RS01945 at 373.329 kb on + strand, within MMJJ_RS01945 at 373.359 kb on - strand, within MMJJ_RS01945 at 373.359 kb on - strand, within MMJJ_RS01945 at 373.359 kb on - strand, within MMJJ_RS01945 at 373.372 kb on - strand, within MMJJ_RS01945 at 373.372 kb on - strand, within MMJJ_RS01945 at 373.372 kb on - strand, within MMJJ_RS01945 at 373.391 kb on - strand, within MMJJ_RS01945 at 373.521 kb on - strand, within MMJJ_RS01945 at 373.533 kb on - strand, within MMJJ_RS01945 at 373.534 kb on + strand, within MMJJ_RS01945 at 373.559 kb on - strand, within MMJJ_RS01945 at 373.559 kb on - strand, within MMJJ_RS01945 at 373.583 kb on - strand, within MMJJ_RS01945 at 373.618 kb on + strand, within MMJJ_RS01945 at 373.715 kb on - strand, within MMJJ_RS01945 at 373.827 kb on - strand, within MMJJ_RS01945 at 373.828 kb on + strand, within MMJJ_RS01945 at 373.828 kb on + strand, within MMJJ_RS01945 at 373.917 kb on + strand at 373.958 kb on - strand, within MMJJ_RS01950 at 373.958 kb on - strand, within MMJJ_RS01950 at 373.959 kb on + strand, within MMJJ_RS01950 at 373.959 kb on + strand, within MMJJ_RS01950 at 373.963 kb on - strand, within MMJJ_RS01950 at 373.963 kb on - strand, within MMJJ_RS01950 at 373.964 kb on + strand, within MMJJ_RS01950 at 373.964 kb on + strand, within MMJJ_RS01950 at 373.967 kb on + strand, within MMJJ_RS01950 at 373.975 kb on - strand, within MMJJ_RS01950 at 373.975 kb on - strand, within MMJJ_RS01950 at 373.975 kb on - strand, within MMJJ_RS01950 at 373.976 kb on + strand, within MMJJ_RS01950 at 373.976 kb on + strand, within MMJJ_RS01950 at 373.976 kb on + strand, within MMJJ_RS01950 at 373.976 kb on + strand, within MMJJ_RS01950 at 373.976 kb on + strand, within MMJJ_RS01950 at 373.987 kb on - strand, within MMJJ_RS01950 at 373.993 kb on - strand, within MMJJ_RS01950 at 373.993 kb on - strand, within MMJJ_RS01950 at 373.994 kb on + strand, within MMJJ_RS01950 at 374.051 kb on - strand, within MMJJ_RS01950 at 374.052 kb on + strand, within MMJJ_RS01950 at 374.059 kb on - strand, within MMJJ_RS01950 at 374.060 kb on + strand, within MMJJ_RS01950 at 374.063 kb on - strand, within MMJJ_RS01950 at 374.075 kb on - strand, within MMJJ_RS01950 at 374.076 kb on + strand, within MMJJ_RS01950
Per-strain Table
Position Strand Gene LocusTag Fraction Formate 50 mM hypophosphite remove 371,657 - MMJJ_RS01935 0.36 -2.6 371,718 - MMJJ_RS01935 0.41 -3.0 371,758 - MMJJ_RS01935 0.44 -2.8 372,021 + MMJJ_RS01935 0.64 -1.6 372,050 + MMJJ_RS01935 0.66 -3.3 372,071 - MMJJ_RS01935 0.68 -1.8 372,126 - MMJJ_RS01935 0.72 -1.7 372,386 + -3.1 372,398 + -2.8 372,399 - -1.7 372,417 + -2.1 372,490 - -0.8 372,515 + -0.7 372,524 - -0.0 372,531 - -1.1 372,532 + -0.2 372,673 - MMJJ_RS01940 0.29 +0.1 372,680 + MMJJ_RS01940 0.30 -1.2 372,689 - MMJJ_RS01940 0.32 -0.5 372,746 - MMJJ_RS01940 0.42 -0.2 372,757 - MMJJ_RS01940 0.44 -0.7 372,758 + MMJJ_RS01940 0.44 +0.3 372,758 + MMJJ_RS01940 0.44 -0.2 372,758 + MMJJ_RS01940 0.44 -0.9 372,837 - MMJJ_RS01940 0.58 -0.8 372,837 - MMJJ_RS01940 0.58 +0.1 372,838 + MMJJ_RS01940 0.58 -0.1 372,839 - MMJJ_RS01940 0.58 -0.0 372,839 - MMJJ_RS01940 0.58 -0.2 372,839 - MMJJ_RS01940 0.58 -0.3 372,840 + MMJJ_RS01940 0.58 -1.8 372,912 + MMJJ_RS01940 0.71 +0.2 372,917 - MMJJ_RS01940 0.72 -0.2 372,924 + MMJJ_RS01940 0.73 +0.4 372,934 + MMJJ_RS01940 0.75 -1.2 372,936 + MMJJ_RS01940 0.75 +0.1 372,958 - MMJJ_RS01940 0.79 +0.1 372,965 - MMJJ_RS01940 0.80 -0.4 372,965 - MMJJ_RS01940 0.80 +0.0 372,968 - MMJJ_RS01940 0.81 -0.9 372,976 - MMJJ_RS01940 0.82 -0.0 372,990 - MMJJ_RS01940 0.85 -0.5 372,991 + MMJJ_RS01940 0.85 -0.2 372,991 + MMJJ_RS01940 0.85 +0.1 372,991 + MMJJ_RS01940 0.85 +0.0 372,991 + MMJJ_RS01940 0.85 -0.5 373,023 + -0.6 373,023 + +0.3 373,023 + -0.3 373,027 + -0.0 373,028 - -0.1 373,028 - -0.5 373,028 - +0.2 373,028 - +0.2 373,029 + +0.2 373,029 + -0.2 373,029 + -0.3 373,029 + +0.4 373,029 + +0.3 373,083 - -0.3 373,083 - +0.4 373,083 - -0.1 373,084 + -0.1 373,084 + +0.0 373,085 - -0.5 373,085 - -0.2 373,086 + -0.0 373,086 + -0.1 373,088 + +0.2 373,088 + +0.1 373,090 - -0.1 373,090 - +0.3 373,090 - +0.0 373,091 + -0.2 373,091 + -0.1 373,091 + -1.6 373,102 + +0.1 373,102 + +0.1 373,110 + -0.2 373,110 + -0.0 373,114 - -0.2 373,114 - +1.1 373,114 - +0.4 373,114 - -0.1 373,114 - +0.2 373,115 + +0.2 373,115 + +0.2 373,115 + -0.1 373,115 + +0.6 373,116 - +1.1 373,116 - -0.0 373,116 - -0.2 373,116 - +0.1 373,116 - -0.2 373,116 - -0.1 373,117 + +0.4 373,117 + +0.3 373,117 + -0.1 373,117 + -0.0 373,117 + +0.2 373,117 + +0.3 373,117 + +0.8 373,117 + -0.0 373,117 + +0.2 373,117 + -1.4 373,117 + +0.1 373,118 - -0.0 373,119 + +0.7 373,119 + +0.3 373,119 + -0.6 373,119 + +0.1 373,119 + -0.3 373,119 + +0.2 373,124 - +0.5 373,124 - +0.8 373,124 - +0.3 373,124 - +0.1 373,125 + -0.4 373,125 + -0.4 373,125 + -0.1 373,129 + +0.7 373,161 + -0.1 373,254 + MMJJ_RS01945 0.13 -0.3 373,272 - MMJJ_RS01945 0.15 -0.5 373,272 - MMJJ_RS01945 0.15 -0.2 373,297 + MMJJ_RS01945 0.18 +0.1 373,297 + MMJJ_RS01945 0.18 -0.4 373,328 - MMJJ_RS01945 0.22 -0.8 373,328 - MMJJ_RS01945 0.22 -0.3 373,329 + MMJJ_RS01945 0.22 +1.7 373,359 - MMJJ_RS01945 0.26 +1.4 373,359 - MMJJ_RS01945 0.26 -0.3 373,359 - MMJJ_RS01945 0.26 +0.1 373,372 - MMJJ_RS01945 0.28 -0.3 373,372 - MMJJ_RS01945 0.28 -0.6 373,372 - MMJJ_RS01945 0.28 -0.8 373,391 - MMJJ_RS01945 0.30 -0.7 373,521 - MMJJ_RS01945 0.47 -0.6 373,533 - MMJJ_RS01945 0.48 -0.9 373,534 + MMJJ_RS01945 0.48 -0.1 373,559 - MMJJ_RS01945 0.52 -0.2 373,559 - MMJJ_RS01945 0.52 -0.1 373,583 - MMJJ_RS01945 0.55 +0.4 373,618 + MMJJ_RS01945 0.59 -0.2 373,715 - MMJJ_RS01945 0.72 +0.3 373,827 - MMJJ_RS01945 0.86 -0.5 373,828 + MMJJ_RS01945 0.86 -0.1 373,828 + MMJJ_RS01945 0.86 +0.0 373,917 + +0.0 373,958 - MMJJ_RS01950 0.13 -0.2 373,958 - MMJJ_RS01950 0.13 -0.6 373,959 + MMJJ_RS01950 0.13 +0.2 373,959 + MMJJ_RS01950 0.13 +1.2 373,963 - MMJJ_RS01950 0.15 +0.3 373,963 - MMJJ_RS01950 0.15 -0.2 373,964 + MMJJ_RS01950 0.16 -0.1 373,964 + MMJJ_RS01950 0.16 -0.2 373,967 + MMJJ_RS01950 0.17 +0.2 373,975 - MMJJ_RS01950 0.22 +0.5 373,975 - MMJJ_RS01950 0.22 +0.4 373,975 - MMJJ_RS01950 0.22 -0.5 373,976 + MMJJ_RS01950 0.22 -0.2 373,976 + MMJJ_RS01950 0.22 +0.5 373,976 + MMJJ_RS01950 0.22 +0.4 373,976 + MMJJ_RS01950 0.22 -0.5 373,976 + MMJJ_RS01950 0.22 -0.3 373,987 - MMJJ_RS01950 0.28 +0.1 373,993 - MMJJ_RS01950 0.32 +0.1 373,993 - MMJJ_RS01950 0.32 -0.3 373,994 + MMJJ_RS01950 0.32 -0.0 374,051 - MMJJ_RS01950 0.63 +0.3 374,052 + MMJJ_RS01950 0.64 -0.0 374,059 - MMJJ_RS01950 0.68 +0.1 374,060 + MMJJ_RS01950 0.68 -0.1 374,063 - MMJJ_RS01950 0.70 +0.3 374,075 - MMJJ_RS01950 0.77 -0.7 374,076 + MMJJ_RS01950 0.77 -0.0
Or see this region's nucleotide sequence