Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07815

Experiment: Formate no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07810 and MMJJ_RS07815 are separated by 1 nucleotidesMMJJ_RS07815 and MMJJ_RS07820 are separated by 82 nucleotides MMJJ_RS07810: MMJJ_RS07810 - 3-methyl-2-oxobutanoate dehydrogenase subunit VorB, at 1,430,224 to 1,431,279 _RS07810 MMJJ_RS07815: MMJJ_RS07815 - 2-oxoacid:acceptor oxidoreductase family protein, at 1,431,281 to 1,432,720 _RS07815 MMJJ_RS07820: MMJJ_RS07820 - bifunctional hexulose-6-phosphate synthase/ribonuclease regulator, at 1,432,803 to 1,434,119 _RS07820 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1430.293 kb on - strandat 1430.293 kb on - strandat 1430.294 kb on + strandat 1430.327 kb on - strandat 1430.328 kb on + strandat 1430.328 kb on + strandat 1430.328 kb on + strandat 1430.347 kb on - strand, within MMJJ_RS07810at 1430.402 kb on - strand, within MMJJ_RS07810at 1430.406 kb on - strand, within MMJJ_RS07810at 1430.407 kb on + strand, within MMJJ_RS07810at 1430.444 kb on - strand, within MMJJ_RS07810at 1430.445 kb on + strand, within MMJJ_RS07810at 1430.528 kb on - strand, within MMJJ_RS07810at 1430.529 kb on + strand, within MMJJ_RS07810at 1430.529 kb on + strand, within MMJJ_RS07810at 1430.529 kb on + strand, within MMJJ_RS07810at 1430.584 kb on - strand, within MMJJ_RS07810at 1430.598 kb on + strand, within MMJJ_RS07810at 1430.701 kb on - strand, within MMJJ_RS07810at 1430.701 kb on - strand, within MMJJ_RS07810at 1430.780 kb on - strand, within MMJJ_RS07810at 1430.781 kb on + strand, within MMJJ_RS07810at 1430.858 kb on - strand, within MMJJ_RS07810at 1430.888 kb on + strand, within MMJJ_RS07810at 1430.944 kb on - strand, within MMJJ_RS07810at 1430.945 kb on + strand, within MMJJ_RS07810at 1430.945 kb on + strand, within MMJJ_RS07810at 1430.945 kb on + strand, within MMJJ_RS07810at 1430.951 kb on - strand, within MMJJ_RS07810at 1430.952 kb on + strand, within MMJJ_RS07810at 1430.980 kb on - strand, within MMJJ_RS07810at 1431.039 kb on + strand, within MMJJ_RS07810at 1431.068 kb on - strand, within MMJJ_RS07810at 1431.069 kb on + strand, within MMJJ_RS07810at 1431.123 kb on - strand, within MMJJ_RS07810at 1431.124 kb on + strand, within MMJJ_RS07810at 1431.225 kb on + strandat 1431.278 kb on + strandat 1431.449 kb on + strand, within MMJJ_RS07815at 1431.449 kb on + strand, within MMJJ_RS07815at 1431.459 kb on - strand, within MMJJ_RS07815at 1431.492 kb on + strand, within MMJJ_RS07815at 1431.494 kb on - strand, within MMJJ_RS07815at 1431.494 kb on - strand, within MMJJ_RS07815at 1431.494 kb on - strand, within MMJJ_RS07815at 1431.495 kb on + strand, within MMJJ_RS07815at 1431.497 kb on - strand, within MMJJ_RS07815at 1431.497 kb on - strand, within MMJJ_RS07815at 1431.515 kb on + strand, within MMJJ_RS07815at 1431.586 kb on + strand, within MMJJ_RS07815at 1431.613 kb on + strand, within MMJJ_RS07815at 1431.733 kb on - strand, within MMJJ_RS07815at 1431.733 kb on - strand, within MMJJ_RS07815at 1431.800 kb on + strand, within MMJJ_RS07815at 1431.800 kb on + strand, within MMJJ_RS07815at 1431.800 kb on + strand, within MMJJ_RS07815at 1431.834 kb on - strand, within MMJJ_RS07815at 1431.835 kb on + strand, within MMJJ_RS07815at 1431.839 kb on + strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.949 kb on + strandat 1431.973 kb on + strand, within MMJJ_RS07815at 1432.114 kb on - strand, within MMJJ_RS07815at 1432.114 kb on - strand, within MMJJ_RS07815at 1432.115 kb on + strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.118 kb on + strand, within MMJJ_RS07815at 1432.119 kb on - strand, within MMJJ_RS07815at 1432.119 kb on - strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.128 kb on - strand, within MMJJ_RS07815at 1432.129 kb on + strand, within MMJJ_RS07815at 1432.185 kb on - strand, within MMJJ_RS07815at 1432.252 kb on - strand, within MMJJ_RS07815at 1432.253 kb on + strand, within MMJJ_RS07815at 1432.266 kb on + strand, within MMJJ_RS07815at 1432.365 kb on + strand, within MMJJ_RS07815at 1432.394 kb on + strand, within MMJJ_RS07815at 1432.623 kb on - strandat 1432.677 kb on - strandat 1432.723 kb on + strandat 1432.760 kb on - strandat 1432.765 kb on + strandat 1432.904 kb on - strandat 1432.968 kb on + strand, within MMJJ_RS07820at 1433.066 kb on - strand, within MMJJ_RS07820at 1433.067 kb on + strand, within MMJJ_RS07820at 1433.068 kb on - strand, within MMJJ_RS07820at 1433.068 kb on - strand, within MMJJ_RS07820at 1433.068 kb on - strand, within MMJJ_RS07820at 1433.069 kb on + strand, within MMJJ_RS07820at 1433.069 kb on + strand, within MMJJ_RS07820at 1433.101 kb on - strand, within MMJJ_RS07820at 1433.104 kb on - strand, within MMJJ_RS07820at 1433.104 kb on - strand, within MMJJ_RS07820at 1433.104 kb on - strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.105 kb on + strand, within MMJJ_RS07820at 1433.113 kb on - strand, within MMJJ_RS07820at 1433.114 kb on + strand, within MMJJ_RS07820at 1433.140 kb on - strand, within MMJJ_RS07820at 1433.140 kb on - strand, within MMJJ_RS07820at 1433.209 kb on - strand, within MMJJ_RS07820at 1433.209 kb on - strand, within MMJJ_RS07820at 1433.210 kb on + strand, within MMJJ_RS07820at 1433.210 kb on + strand, within MMJJ_RS07820at 1433.210 kb on + strand, within MMJJ_RS07820at 1433.213 kb on - strand, within MMJJ_RS07820at 1433.218 kb on - strand, within MMJJ_RS07820at 1433.219 kb on + strand, within MMJJ_RS07820at 1433.219 kb on + strand, within MMJJ_RS07820at 1433.219 kb on + strand, within MMJJ_RS07820at 1433.223 kb on + strand, within MMJJ_RS07820at 1433.251 kb on - strand, within MMJJ_RS07820at 1433.276 kb on + strand, within MMJJ_RS07820at 1433.298 kb on + strand, within MMJJ_RS07820at 1433.375 kb on + strand, within MMJJ_RS07820at 1433.400 kb on + strand, within MMJJ_RS07820at 1433.400 kb on + strand, within MMJJ_RS07820at 1433.432 kb on - strand, within MMJJ_RS07820at 1433.437 kb on - strand, within MMJJ_RS07820at 1433.438 kb on + strand, within MMJJ_RS07820at 1433.525 kb on + strand, within MMJJ_RS07820at 1433.539 kb on - strand, within MMJJ_RS07820at 1433.556 kb on + strand, within MMJJ_RS07820at 1433.636 kb on - strand, within MMJJ_RS07820at 1433.643 kb on - strand, within MMJJ_RS07820at 1433.669 kb on + strand, within MMJJ_RS07820at 1433.669 kb on + strand, within MMJJ_RS07820at 1433.704 kb on - strand, within MMJJ_RS07820at 1433.704 kb on - strand, within MMJJ_RS07820at 1433.705 kb on + strand, within MMJJ_RS07820at 1433.705 kb on + strand, within MMJJ_RS07820at 1433.708 kb on + strand, within MMJJ_RS07820at 1433.708 kb on + strand, within MMJJ_RS07820

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate no stress control
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1,430,293 - -1.6
1,430,293 - -3.3
1,430,294 + -2.8
1,430,327 - -2.5
1,430,328 + -3.0
1,430,328 + -2.8
1,430,328 + -2.4
1,430,347 - MMJJ_RS07810 0.12 -3.1
1,430,402 - MMJJ_RS07810 0.17 -2.8
1,430,406 - MMJJ_RS07810 0.17 -2.5
1,430,407 + MMJJ_RS07810 0.17 -3.2
1,430,444 - MMJJ_RS07810 0.21 -2.9
1,430,445 + MMJJ_RS07810 0.21 -2.2
1,430,528 - MMJJ_RS07810 0.29 -3.1
1,430,529 + MMJJ_RS07810 0.29 -2.6
1,430,529 + MMJJ_RS07810 0.29 -3.3
1,430,529 + MMJJ_RS07810 0.29 -2.2
1,430,584 - MMJJ_RS07810 0.34 -4.2
1,430,598 + MMJJ_RS07810 0.35 -3.2
1,430,701 - MMJJ_RS07810 0.45 -2.9
1,430,701 - MMJJ_RS07810 0.45 -0.8
1,430,780 - MMJJ_RS07810 0.53 -2.5
1,430,781 + MMJJ_RS07810 0.53 -3.6
1,430,858 - MMJJ_RS07810 0.60 -3.8
1,430,888 + MMJJ_RS07810 0.63 -1.9
1,430,944 - MMJJ_RS07810 0.68 -3.3
1,430,945 + MMJJ_RS07810 0.68 -3.2
1,430,945 + MMJJ_RS07810 0.68 -2.8
1,430,945 + MMJJ_RS07810 0.68 -3.0
1,430,951 - MMJJ_RS07810 0.69 -3.9
1,430,952 + MMJJ_RS07810 0.69 -3.1
1,430,980 - MMJJ_RS07810 0.72 -2.3
1,431,039 + MMJJ_RS07810 0.77 -2.5
1,431,068 - MMJJ_RS07810 0.80 -3.3
1,431,069 + MMJJ_RS07810 0.80 -3.2
1,431,123 - MMJJ_RS07810 0.85 -1.9
1,431,124 + MMJJ_RS07810 0.85 -1.7
1,431,225 + -3.3
1,431,278 + -3.2
1,431,449 + MMJJ_RS07815 0.12 -1.7
1,431,449 + MMJJ_RS07815 0.12 -3.4
1,431,459 - MMJJ_RS07815 0.12 -2.5
1,431,492 + MMJJ_RS07815 0.15 -2.5
1,431,494 - MMJJ_RS07815 0.15 -1.7
1,431,494 - MMJJ_RS07815 0.15 -2.5
1,431,494 - MMJJ_RS07815 0.15 -3.3
1,431,495 + MMJJ_RS07815 0.15 -2.8
1,431,497 - MMJJ_RS07815 0.15 -0.8
1,431,497 - MMJJ_RS07815 0.15 -2.0
1,431,515 + MMJJ_RS07815 0.16 -2.2
1,431,586 + MMJJ_RS07815 0.21 -2.5
1,431,613 + MMJJ_RS07815 0.23 -0.3
1,431,733 - MMJJ_RS07815 0.31 -5.1
1,431,733 - MMJJ_RS07815 0.31 -4.6
1,431,800 + MMJJ_RS07815 0.36 -3.4
1,431,800 + MMJJ_RS07815 0.36 -2.5
1,431,800 + MMJJ_RS07815 0.36 -2.4
1,431,834 - MMJJ_RS07815 0.38 -2.8
1,431,835 + MMJJ_RS07815 0.38 -4.3
1,431,839 + MMJJ_RS07815 0.39 -3.2
1,431,873 - MMJJ_RS07815 0.41 -1.3
1,431,873 - MMJJ_RS07815 0.41 -2.8
1,431,873 - MMJJ_RS07815 0.41 -2.3
1,431,874 + MMJJ_RS07815 0.41 -2.7
1,431,874 + MMJJ_RS07815 0.41 -2.8
1,431,874 + MMJJ_RS07815 0.41 -0.4
1,431,874 + MMJJ_RS07815 0.41 -3.5
1,431,949 + -0.8
1,431,973 + MMJJ_RS07815 0.48 -2.5
1,432,114 - MMJJ_RS07815 0.58 -2.0
1,432,114 - MMJJ_RS07815 0.58 -2.8
1,432,115 + MMJJ_RS07815 0.58 -2.5
1,432,117 - MMJJ_RS07815 0.58 -3.4
1,432,117 - MMJJ_RS07815 0.58 -2.2
1,432,117 - MMJJ_RS07815 0.58 -1.7
1,432,118 + MMJJ_RS07815 0.58 -3.6
1,432,119 - MMJJ_RS07815 0.58 -2.7
1,432,119 - MMJJ_RS07815 0.58 -4.5
1,432,120 + MMJJ_RS07815 0.58 -3.6
1,432,120 + MMJJ_RS07815 0.58 -3.5
1,432,120 + MMJJ_RS07815 0.58 -3.1
1,432,120 + MMJJ_RS07815 0.58 -3.2
1,432,120 + MMJJ_RS07815 0.58 -0.3
1,432,120 + MMJJ_RS07815 0.58 -3.2
1,432,120 + MMJJ_RS07815 0.58 -3.0
1,432,120 + MMJJ_RS07815 0.58 -2.9
1,432,120 + MMJJ_RS07815 0.58 -2.2
1,432,120 + MMJJ_RS07815 0.58 -2.1
1,432,128 - MMJJ_RS07815 0.59 -2.8
1,432,129 + MMJJ_RS07815 0.59 -3.7
1,432,185 - MMJJ_RS07815 0.63 -4.1
1,432,252 - MMJJ_RS07815 0.67 -2.1
1,432,253 + MMJJ_RS07815 0.68 -1.6
1,432,266 + MMJJ_RS07815 0.68 -2.4
1,432,365 + MMJJ_RS07815 0.75 -3.2
1,432,394 + MMJJ_RS07815 0.77 -2.0
1,432,623 - -1.6
1,432,677 - -3.0
1,432,723 + -0.4
1,432,760 - +0.2
1,432,765 + -0.1
1,432,904 - -0.5
1,432,968 + MMJJ_RS07820 0.13 -0.3
1,433,066 - MMJJ_RS07820 0.20 +1.3
1,433,067 + MMJJ_RS07820 0.20 +0.6
1,433,068 - MMJJ_RS07820 0.20 +0.3
1,433,068 - MMJJ_RS07820 0.20 -0.1
1,433,068 - MMJJ_RS07820 0.20 -0.1
1,433,069 + MMJJ_RS07820 0.20 +0.1
1,433,069 + MMJJ_RS07820 0.20 -0.3
1,433,101 - MMJJ_RS07820 0.23 +0.5
1,433,104 - MMJJ_RS07820 0.23 +0.3
1,433,104 - MMJJ_RS07820 0.23 -0.2
1,433,104 - MMJJ_RS07820 0.23 -0.8
1,433,105 + MMJJ_RS07820 0.23 +0.3
1,433,105 + MMJJ_RS07820 0.23 +0.7
1,433,105 + MMJJ_RS07820 0.23 -0.4
1,433,105 + MMJJ_RS07820 0.23 +0.1
1,433,113 - MMJJ_RS07820 0.24 -0.3
1,433,114 + MMJJ_RS07820 0.24 -1.1
1,433,140 - MMJJ_RS07820 0.26 +0.1
1,433,140 - MMJJ_RS07820 0.26 -0.3
1,433,209 - MMJJ_RS07820 0.31 -0.5
1,433,209 - MMJJ_RS07820 0.31 -0.9
1,433,210 + MMJJ_RS07820 0.31 -0.3
1,433,210 + MMJJ_RS07820 0.31 +0.0
1,433,210 + MMJJ_RS07820 0.31 +0.2
1,433,213 - MMJJ_RS07820 0.31 -1.2
1,433,218 - MMJJ_RS07820 0.32 -1.3
1,433,219 + MMJJ_RS07820 0.32 -0.2
1,433,219 + MMJJ_RS07820 0.32 -0.6
1,433,219 + MMJJ_RS07820 0.32 +0.3
1,433,223 + MMJJ_RS07820 0.32 +1.3
1,433,251 - MMJJ_RS07820 0.34 -0.0
1,433,276 + MMJJ_RS07820 0.36 -1.0
1,433,298 + MMJJ_RS07820 0.38 +0.4
1,433,375 + MMJJ_RS07820 0.43 -0.6
1,433,400 + MMJJ_RS07820 0.45 -0.2
1,433,400 + MMJJ_RS07820 0.45 -1.5
1,433,432 - MMJJ_RS07820 0.48 -0.7
1,433,437 - MMJJ_RS07820 0.48 -0.2
1,433,438 + MMJJ_RS07820 0.48 -0.2
1,433,525 + MMJJ_RS07820 0.55 -1.3
1,433,539 - MMJJ_RS07820 0.56 -0.0
1,433,556 + MMJJ_RS07820 0.57 -0.3
1,433,636 - MMJJ_RS07820 0.63 +0.3
1,433,643 - MMJJ_RS07820 0.64 +0.4
1,433,669 + MMJJ_RS07820 0.66 +0.1
1,433,669 + MMJJ_RS07820 0.66 +0.2
1,433,704 - MMJJ_RS07820 0.68 -0.4
1,433,704 - MMJJ_RS07820 0.68 -0.7
1,433,705 + MMJJ_RS07820 0.68 -0.6
1,433,705 + MMJJ_RS07820 0.68 -0.5
1,433,708 + MMJJ_RS07820 0.69 -0.2
1,433,708 + MMJJ_RS07820 0.69 -0.3

Or see this region's nucleotide sequence