Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07810

Experiment: Formate no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07800 and MMJJ_RS07805 are separated by 83 nucleotidesMMJJ_RS07805 and MMJJ_RS07810 are separated by 10 nucleotidesMMJJ_RS07810 and MMJJ_RS07815 are separated by 1 nucleotides MMJJ_RS07800: MMJJ_RS07800 - AMP-binding protein, at 1,428,217 to 1,429,890 _RS07800 MMJJ_RS07805: MMJJ_RS07805 - ferredoxin family protein, at 1,429,974 to 1,430,213 _RS07805 MMJJ_RS07810: MMJJ_RS07810 - 3-methyl-2-oxobutanoate dehydrogenase subunit VorB, at 1,430,224 to 1,431,279 _RS07810 MMJJ_RS07815: MMJJ_RS07815 - 2-oxoacid:acceptor oxidoreductase family protein, at 1,431,281 to 1,432,720 _RS07815 Position (kb) 1430 1431 1432Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1429.245 kb on - strand, within MMJJ_RS07800at 1429.246 kb on + strand, within MMJJ_RS07800at 1429.246 kb on + strand, within MMJJ_RS07800at 1429.251 kb on + strand, within MMJJ_RS07800at 1429.283 kb on - strand, within MMJJ_RS07800at 1429.283 kb on - strand, within MMJJ_RS07800at 1429.283 kb on - strand, within MMJJ_RS07800at 1429.284 kb on + strand, within MMJJ_RS07800at 1429.284 kb on + strand, within MMJJ_RS07800at 1429.391 kb on - strand, within MMJJ_RS07800at 1429.391 kb on - strand, within MMJJ_RS07800at 1429.392 kb on + strand, within MMJJ_RS07800at 1429.492 kb on - strand, within MMJJ_RS07800at 1429.493 kb on + strand, within MMJJ_RS07800at 1429.505 kb on + strand, within MMJJ_RS07800at 1429.544 kb on + strand, within MMJJ_RS07800at 1429.626 kb on - strand, within MMJJ_RS07800at 1429.626 kb on - strand, within MMJJ_RS07800at 1429.626 kb on - strand, within MMJJ_RS07800at 1429.626 kb on - strand, within MMJJ_RS07800at 1429.627 kb on + strand, within MMJJ_RS07800at 1429.644 kb on + strand, within MMJJ_RS07800at 1429.644 kb on + strand, within MMJJ_RS07800at 1429.658 kb on - strand, within MMJJ_RS07800at 1429.658 kb on - strand, within MMJJ_RS07800at 1429.659 kb on + strand, within MMJJ_RS07800at 1429.659 kb on + strand, within MMJJ_RS07800at 1429.659 kb on + strand, within MMJJ_RS07800at 1429.695 kb on - strand, within MMJJ_RS07800at 1429.701 kb on - strand, within MMJJ_RS07800at 1429.702 kb on + strand, within MMJJ_RS07800at 1429.787 kb on + strandat 1429.792 kb on - strandat 1429.892 kb on - strandat 1429.896 kb on - strandat 1429.896 kb on - strandat 1429.897 kb on + strandat 1429.919 kb on + strandat 1429.919 kb on + strandat 1429.923 kb on - strandat 1429.923 kb on - strandat 1429.923 kb on - strandat 1429.924 kb on + strandat 1429.924 kb on + strandat 1429.957 kb on - strandat 1429.958 kb on + strandat 1429.958 kb on + strandat 1429.958 kb on + strandat 1429.974 kb on + strandat 1430.006 kb on + strand, within MMJJ_RS07805at 1430.010 kb on + strand, within MMJJ_RS07805at 1430.010 kb on + strand, within MMJJ_RS07805at 1430.044 kb on - strand, within MMJJ_RS07805at 1430.044 kb on - strand, within MMJJ_RS07805at 1430.044 kb on - strand, within MMJJ_RS07805at 1430.100 kb on - strand, within MMJJ_RS07805at 1430.101 kb on + strand, within MMJJ_RS07805at 1430.103 kb on + strand, within MMJJ_RS07805at 1430.103 kb on + strand, within MMJJ_RS07805at 1430.106 kb on - strand, within MMJJ_RS07805at 1430.110 kb on - strand, within MMJJ_RS07805at 1430.115 kb on - strand, within MMJJ_RS07805at 1430.154 kb on - strand, within MMJJ_RS07805at 1430.155 kb on + strand, within MMJJ_RS07805at 1430.155 kb on + strand, within MMJJ_RS07805at 1430.180 kb on + strand, within MMJJ_RS07805at 1430.186 kb on + strand, within MMJJ_RS07805at 1430.211 kb on - strandat 1430.220 kb on - strandat 1430.221 kb on + strandat 1430.221 kb on + strandat 1430.221 kb on + strandat 1430.221 kb on + strandat 1430.221 kb on + strandat 1430.221 kb on + strandat 1430.275 kb on - strandat 1430.275 kb on - strandat 1430.275 kb on - strandat 1430.275 kb on - strandat 1430.275 kb on - strandat 1430.275 kb on - strandat 1430.275 kb on - strandat 1430.276 kb on + strandat 1430.276 kb on + strandat 1430.293 kb on - strandat 1430.293 kb on - strandat 1430.294 kb on + strandat 1430.327 kb on - strandat 1430.328 kb on + strandat 1430.328 kb on + strandat 1430.328 kb on + strandat 1430.347 kb on - strand, within MMJJ_RS07810at 1430.402 kb on - strand, within MMJJ_RS07810at 1430.406 kb on - strand, within MMJJ_RS07810at 1430.407 kb on + strand, within MMJJ_RS07810at 1430.444 kb on - strand, within MMJJ_RS07810at 1430.445 kb on + strand, within MMJJ_RS07810at 1430.528 kb on - strand, within MMJJ_RS07810at 1430.529 kb on + strand, within MMJJ_RS07810at 1430.529 kb on + strand, within MMJJ_RS07810at 1430.529 kb on + strand, within MMJJ_RS07810at 1430.584 kb on - strand, within MMJJ_RS07810at 1430.598 kb on + strand, within MMJJ_RS07810at 1430.701 kb on - strand, within MMJJ_RS07810at 1430.701 kb on - strand, within MMJJ_RS07810at 1430.780 kb on - strand, within MMJJ_RS07810at 1430.781 kb on + strand, within MMJJ_RS07810at 1430.858 kb on - strand, within MMJJ_RS07810at 1430.888 kb on + strand, within MMJJ_RS07810at 1430.944 kb on - strand, within MMJJ_RS07810at 1430.945 kb on + strand, within MMJJ_RS07810at 1430.945 kb on + strand, within MMJJ_RS07810at 1430.945 kb on + strand, within MMJJ_RS07810at 1430.951 kb on - strand, within MMJJ_RS07810at 1430.952 kb on + strand, within MMJJ_RS07810at 1430.980 kb on - strand, within MMJJ_RS07810at 1431.039 kb on + strand, within MMJJ_RS07810at 1431.068 kb on - strand, within MMJJ_RS07810at 1431.069 kb on + strand, within MMJJ_RS07810at 1431.123 kb on - strand, within MMJJ_RS07810at 1431.124 kb on + strand, within MMJJ_RS07810at 1431.225 kb on + strandat 1431.278 kb on + strandat 1431.449 kb on + strand, within MMJJ_RS07815at 1431.449 kb on + strand, within MMJJ_RS07815at 1431.459 kb on - strand, within MMJJ_RS07815at 1431.492 kb on + strand, within MMJJ_RS07815at 1431.494 kb on - strand, within MMJJ_RS07815at 1431.494 kb on - strand, within MMJJ_RS07815at 1431.494 kb on - strand, within MMJJ_RS07815at 1431.495 kb on + strand, within MMJJ_RS07815at 1431.497 kb on - strand, within MMJJ_RS07815at 1431.497 kb on - strand, within MMJJ_RS07815at 1431.515 kb on + strand, within MMJJ_RS07815at 1431.586 kb on + strand, within MMJJ_RS07815at 1431.613 kb on + strand, within MMJJ_RS07815at 1431.733 kb on - strand, within MMJJ_RS07815at 1431.733 kb on - strand, within MMJJ_RS07815at 1431.800 kb on + strand, within MMJJ_RS07815at 1431.800 kb on + strand, within MMJJ_RS07815at 1431.800 kb on + strand, within MMJJ_RS07815at 1431.834 kb on - strand, within MMJJ_RS07815at 1431.835 kb on + strand, within MMJJ_RS07815at 1431.839 kb on + strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.873 kb on - strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.874 kb on + strand, within MMJJ_RS07815at 1431.949 kb on + strandat 1431.973 kb on + strand, within MMJJ_RS07815at 1432.114 kb on - strand, within MMJJ_RS07815at 1432.114 kb on - strand, within MMJJ_RS07815at 1432.115 kb on + strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.117 kb on - strand, within MMJJ_RS07815at 1432.118 kb on + strand, within MMJJ_RS07815at 1432.119 kb on - strand, within MMJJ_RS07815at 1432.119 kb on - strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.120 kb on + strand, within MMJJ_RS07815at 1432.128 kb on - strand, within MMJJ_RS07815at 1432.129 kb on + strand, within MMJJ_RS07815at 1432.185 kb on - strand, within MMJJ_RS07815at 1432.252 kb on - strand, within MMJJ_RS07815at 1432.253 kb on + strand, within MMJJ_RS07815at 1432.266 kb on + strand, within MMJJ_RS07815

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate no stress control
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1,429,245 - MMJJ_RS07800 0.61 +0.2
1,429,246 + MMJJ_RS07800 0.61 +0.1
1,429,246 + MMJJ_RS07800 0.61 +0.1
1,429,251 + MMJJ_RS07800 0.62 -0.4
1,429,283 - MMJJ_RS07800 0.64 +0.1
1,429,283 - MMJJ_RS07800 0.64 -0.1
1,429,283 - MMJJ_RS07800 0.64 -0.3
1,429,284 + MMJJ_RS07800 0.64 +0.7
1,429,284 + MMJJ_RS07800 0.64 +0.7
1,429,391 - MMJJ_RS07800 0.70 +0.7
1,429,391 - MMJJ_RS07800 0.70 +0.5
1,429,392 + MMJJ_RS07800 0.70 -0.3
1,429,492 - MMJJ_RS07800 0.76 +0.8
1,429,493 + MMJJ_RS07800 0.76 -0.2
1,429,505 + MMJJ_RS07800 0.77 -0.0
1,429,544 + MMJJ_RS07800 0.79 +0.7
1,429,626 - MMJJ_RS07800 0.84 +0.3
1,429,626 - MMJJ_RS07800 0.84 -0.2
1,429,626 - MMJJ_RS07800 0.84 -0.3
1,429,626 - MMJJ_RS07800 0.84 +0.2
1,429,627 + MMJJ_RS07800 0.84 +0.2
1,429,644 + MMJJ_RS07800 0.85 +0.4
1,429,644 + MMJJ_RS07800 0.85 +0.6
1,429,658 - MMJJ_RS07800 0.86 -0.0
1,429,658 - MMJJ_RS07800 0.86 +0.6
1,429,659 + MMJJ_RS07800 0.86 +0.4
1,429,659 + MMJJ_RS07800 0.86 +0.5
1,429,659 + MMJJ_RS07800 0.86 +0.6
1,429,695 - MMJJ_RS07800 0.88 +0.7
1,429,701 - MMJJ_RS07800 0.89 -0.3
1,429,702 + MMJJ_RS07800 0.89 -0.8
1,429,787 + +0.6
1,429,792 - +0.7
1,429,892 - -4.7
1,429,896 - -4.4
1,429,896 - -3.1
1,429,897 + -1.1
1,429,919 + -2.3
1,429,919 + -0.6
1,429,923 - -3.3
1,429,923 - -2.8
1,429,923 - -2.8
1,429,924 + -1.2
1,429,924 + -2.1
1,429,957 - -2.2
1,429,958 + -3.4
1,429,958 + -2.9
1,429,958 + -1.8
1,429,974 + -2.7
1,430,006 + MMJJ_RS07805 0.13 -2.0
1,430,010 + MMJJ_RS07805 0.15 -2.7
1,430,010 + MMJJ_RS07805 0.15 -2.1
1,430,044 - MMJJ_RS07805 0.29 -1.6
1,430,044 - MMJJ_RS07805 0.29 -2.2
1,430,044 - MMJJ_RS07805 0.29 -1.1
1,430,100 - MMJJ_RS07805 0.53 -1.8
1,430,101 + MMJJ_RS07805 0.53 -3.0
1,430,103 + MMJJ_RS07805 0.54 +0.9
1,430,103 + MMJJ_RS07805 0.54 -2.6
1,430,106 - MMJJ_RS07805 0.55 -2.8
1,430,110 - MMJJ_RS07805 0.57 -1.0
1,430,115 - MMJJ_RS07805 0.59 -2.3
1,430,154 - MMJJ_RS07805 0.75 -2.6
1,430,155 + MMJJ_RS07805 0.75 -1.9
1,430,155 + MMJJ_RS07805 0.75 -2.8
1,430,180 + MMJJ_RS07805 0.86 -1.6
1,430,186 + MMJJ_RS07805 0.88 -2.4
1,430,211 - -2.8
1,430,220 - -2.7
1,430,221 + -3.2
1,430,221 + -3.0
1,430,221 + -1.5
1,430,221 + -2.3
1,430,221 + -2.8
1,430,221 + -3.7
1,430,275 - -2.2
1,430,275 - -4.0
1,430,275 - -3.6
1,430,275 - -3.0
1,430,275 - -2.7
1,430,275 - -2.3
1,430,275 - -1.9
1,430,276 + -2.8
1,430,276 + -1.8
1,430,293 - -2.0
1,430,293 - -2.5
1,430,294 + -1.8
1,430,327 - -2.3
1,430,328 + -2.6
1,430,328 + -2.5
1,430,328 + -3.0
1,430,347 - MMJJ_RS07810 0.12 -2.4
1,430,402 - MMJJ_RS07810 0.17 -2.2
1,430,406 - MMJJ_RS07810 0.17 -3.2
1,430,407 + MMJJ_RS07810 0.17 -2.5
1,430,444 - MMJJ_RS07810 0.21 -3.3
1,430,445 + MMJJ_RS07810 0.21 -2.2
1,430,528 - MMJJ_RS07810 0.29 -3.1
1,430,529 + MMJJ_RS07810 0.29 -2.5
1,430,529 + MMJJ_RS07810 0.29 -2.7
1,430,529 + MMJJ_RS07810 0.29 -2.6
1,430,584 - MMJJ_RS07810 0.34 -3.0
1,430,598 + MMJJ_RS07810 0.35 -3.2
1,430,701 - MMJJ_RS07810 0.45 -1.9
1,430,701 - MMJJ_RS07810 0.45 -3.1
1,430,780 - MMJJ_RS07810 0.53 -1.8
1,430,781 + MMJJ_RS07810 0.53 -2.7
1,430,858 - MMJJ_RS07810 0.60 -4.4
1,430,888 + MMJJ_RS07810 0.63 -2.2
1,430,944 - MMJJ_RS07810 0.68 -2.7
1,430,945 + MMJJ_RS07810 0.68 -3.2
1,430,945 + MMJJ_RS07810 0.68 -2.1
1,430,945 + MMJJ_RS07810 0.68 -2.8
1,430,951 - MMJJ_RS07810 0.69 -2.3
1,430,952 + MMJJ_RS07810 0.69 -2.2
1,430,980 - MMJJ_RS07810 0.72 -4.5
1,431,039 + MMJJ_RS07810 0.77 -3.1
1,431,068 - MMJJ_RS07810 0.80 -2.8
1,431,069 + MMJJ_RS07810 0.80 -2.8
1,431,123 - MMJJ_RS07810 0.85 -2.6
1,431,124 + MMJJ_RS07810 0.85 -3.7
1,431,225 + -2.4
1,431,278 + -3.2
1,431,449 + MMJJ_RS07815 0.12 -2.7
1,431,449 + MMJJ_RS07815 0.12 -2.2
1,431,459 - MMJJ_RS07815 0.12 -2.3
1,431,492 + MMJJ_RS07815 0.15 -2.5
1,431,494 - MMJJ_RS07815 0.15 -1.7
1,431,494 - MMJJ_RS07815 0.15 -2.8
1,431,494 - MMJJ_RS07815 0.15 -2.2
1,431,495 + MMJJ_RS07815 0.15 -2.8
1,431,497 - MMJJ_RS07815 0.15 -1.8
1,431,497 - MMJJ_RS07815 0.15 -1.5
1,431,515 + MMJJ_RS07815 0.16 -3.0
1,431,586 + MMJJ_RS07815 0.21 -2.1
1,431,613 + MMJJ_RS07815 0.23 -0.3
1,431,733 - MMJJ_RS07815 0.31 -3.1
1,431,733 - MMJJ_RS07815 0.31 -2.6
1,431,800 + MMJJ_RS07815 0.36 -2.7
1,431,800 + MMJJ_RS07815 0.36 -2.8
1,431,800 + MMJJ_RS07815 0.36 -2.4
1,431,834 - MMJJ_RS07815 0.38 -2.8
1,431,835 + MMJJ_RS07815 0.38 -2.7
1,431,839 + MMJJ_RS07815 0.39 -2.2
1,431,873 - MMJJ_RS07815 0.41 -2.3
1,431,873 - MMJJ_RS07815 0.41 -2.8
1,431,873 - MMJJ_RS07815 0.41 -1.8
1,431,874 + MMJJ_RS07815 0.41 -2.7
1,431,874 + MMJJ_RS07815 0.41 -2.8
1,431,874 + MMJJ_RS07815 0.41 -0.3
1,431,874 + MMJJ_RS07815 0.41 -3.0
1,431,949 + -0.9
1,431,973 + MMJJ_RS07815 0.48 -2.6
1,432,114 - MMJJ_RS07815 0.58 -2.6
1,432,114 - MMJJ_RS07815 0.58 -2.8
1,432,115 + MMJJ_RS07815 0.58 -2.1
1,432,117 - MMJJ_RS07815 0.58 -1.8
1,432,117 - MMJJ_RS07815 0.58 -0.6
1,432,117 - MMJJ_RS07815 0.58 -3.4
1,432,118 + MMJJ_RS07815 0.58 -1.6
1,432,119 - MMJJ_RS07815 0.58 -2.2
1,432,119 - MMJJ_RS07815 0.58 -2.2
1,432,120 + MMJJ_RS07815 0.58 -4.0
1,432,120 + MMJJ_RS07815 0.58 -3.5
1,432,120 + MMJJ_RS07815 0.58 -1.5
1,432,120 + MMJJ_RS07815 0.58 -3.2
1,432,120 + MMJJ_RS07815 0.58 -0.3
1,432,120 + MMJJ_RS07815 0.58 -2.5
1,432,120 + MMJJ_RS07815 0.58 -2.0
1,432,120 + MMJJ_RS07815 0.58 -1.9
1,432,120 + MMJJ_RS07815 0.58 -2.8
1,432,120 + MMJJ_RS07815 0.58 -2.1
1,432,128 - MMJJ_RS07815 0.59 -3.6
1,432,129 + MMJJ_RS07815 0.59 -3.2
1,432,185 - MMJJ_RS07815 0.63 -2.1
1,432,252 - MMJJ_RS07815 0.67 -5.1
1,432,253 + MMJJ_RS07815 0.68 -4.2
1,432,266 + MMJJ_RS07815 0.68 -1.7

Or see this region's nucleotide sequence