Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08465

Experiment: Formate no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate no stress control
1,555,608	-		MMJJ_RS08455	0.68	-0.8
1,555,608	-		MMJJ_RS08455	0.68	+0.1
1,555,608	-		MMJJ_RS08455	0.68	+0.0
1,555,609	+		MMJJ_RS08455	0.68	-0.3
1,555,609	+		MMJJ_RS08455	0.68	+0.7
1,555,635	-		MMJJ_RS08455	0.75	+0.2
1,555,636	+		MMJJ_RS08455	0.75	-0.0
1,555,636	+		MMJJ_RS08455	0.75	-0.5
1,555,677	-		MMJJ_RS08455	0.86	-0.1
1,555,679	-		MMJJ_RS08455	0.86	-0.5
1,555,728	-				+0.1
1,555,735	-				+0.5
1,555,739	-				+0.4
1,555,824	+		MMJJ_RS08460	0.10	-0.2
1,555,849	-		MMJJ_RS08460	0.14	+0.0
1,555,958	+		MMJJ_RS08460	0.29	+0.6
1,555,976	-		MMJJ_RS08460	0.32	+0.1
1,555,980	-		MMJJ_RS08460	0.32	+0.8
1,555,981	+		MMJJ_RS08460	0.32	-0.2
1,556,013	-		MMJJ_RS08460	0.37	-0.0
1,556,014	+		MMJJ_RS08460	0.37	-0.5
1,556,073	+		MMJJ_RS08460	0.45	+0.4
1,556,087	+				-0.5
1,556,118	-		MMJJ_RS08460	0.51	+0.4
1,556,121	-		MMJJ_RS08460	0.52	-0.4
1,556,122	+		MMJJ_RS08460	0.52	-0.1
1,556,122	+		MMJJ_RS08460	0.52	+0.2
1,556,125	-		MMJJ_RS08460	0.52	+0.5
1,556,136	-		MMJJ_RS08460	0.54	+0.6
1,556,137	+		MMJJ_RS08460	0.54	+0.0
1,556,137	+		MMJJ_RS08460	0.54	-0.3
1,556,137	+		MMJJ_RS08460	0.54	-0.2
1,556,209	-		MMJJ_RS08460	0.64	+0.4
1,556,216	-		MMJJ_RS08460	0.65	-0.3
1,556,216	-		MMJJ_RS08460	0.65	+0.1
1,556,217	+		MMJJ_RS08460	0.65	-0.2
1,556,217	+		MMJJ_RS08460	0.65	-0.4
1,556,218	-		MMJJ_RS08460	0.66	-0.0
1,556,254	+		MMJJ_RS08460	0.71	-0.0
1,556,286	-		MMJJ_RS08460	0.75	+0.0
1,556,297	-		MMJJ_RS08460	0.77	-0.3
1,556,394	-				-0.3
1,556,426	-				+0.2
1,556,454	-				+0.2
1,556,454	-				+0.0
1,556,454	-				+0.1
1,556,455	+				-0.7
1,556,462	-				+0.0
1,556,510	+				-0.7
1,556,701	-				-0.3
1,556,702	+				+0.1
1,556,762	-		MMJJ_RS08465	0.11	-0.0
1,556,813	+		MMJJ_RS08465	0.13	+0.0
1,556,815	+		MMJJ_RS08465	0.13	+0.9
1,556,815	+		MMJJ_RS08465	0.13	+0.1
1,556,849	-		MMJJ_RS08465	0.15	+0.4
1,556,850	+		MMJJ_RS08465	0.15	+1.2
1,556,897	-		MMJJ_RS08465	0.16	+0.1
1,556,909	-		MMJJ_RS08465	0.17	-0.4
1,556,909	-		MMJJ_RS08465	0.17	+0.2
1,556,909	-		MMJJ_RS08465	0.17	-0.3
1,556,998	-		MMJJ_RS08465	0.20	+0.0
1,556,998	-		MMJJ_RS08465	0.20	-0.1
1,556,998	-		MMJJ_RS08465	0.20	+0.2
1,557,040	+		MMJJ_RS08465	0.22	+0.0
1,557,146	-		MMJJ_RS08465	0.26	+0.2
1,557,179	-				-1.0
1,557,260	+		MMJJ_RS08465	0.30	-0.5
1,557,443	-		MMJJ_RS08465	0.37	+0.2
1,557,444	+		MMJJ_RS08465	0.37	+0.2
1,557,547	-		MMJJ_RS08465	0.41	-0.0
1,557,547	-		MMJJ_RS08465	0.41	+0.1
1,557,562	+		MMJJ_RS08465	0.42	+0.3
1,557,623	-		MMJJ_RS08465	0.44	-0.2
1,557,623	-		MMJJ_RS08465	0.44	-0.7
1,557,633	-		MMJJ_RS08465	0.44	+0.0
1,557,661	+		MMJJ_RS08465	0.46	-1.2
1,557,675	-		MMJJ_RS08465	0.46	+0.2
1,557,676	+		MMJJ_RS08465	0.46	+0.3
1,557,706	-		MMJJ_RS08465	0.47	+0.2
1,557,709	-		MMJJ_RS08465	0.47	-0.1
1,557,710	+		MMJJ_RS08465	0.47	+0.3
1,557,721	-		MMJJ_RS08465	0.48	-0.4
1,557,722	+		MMJJ_RS08465	0.48	-0.1
1,557,722	+		MMJJ_RS08465	0.48	-0.3
1,557,722	+		MMJJ_RS08465	0.48	-0.6
1,557,724	+		MMJJ_RS08465	0.48	-0.2
1,557,763	-		MMJJ_RS08465	0.49	-0.1
1,557,763	-		MMJJ_RS08465	0.49	-0.1
1,557,763	-		MMJJ_RS08465	0.49	+0.2
1,557,765	-		MMJJ_RS08465	0.50	-0.2
1,557,766	+		MMJJ_RS08465	0.50	+0.1
1,557,790	-		MMJJ_RS08465	0.50	-0.5
1,557,790	-		MMJJ_RS08465	0.50	-0.0
1,557,791	+		MMJJ_RS08465	0.51	+0.1
1,557,791	+		MMJJ_RS08465	0.51	+0.7
1,557,831	+		MMJJ_RS08465	0.52	-0.2
1,557,881	-		MMJJ_RS08465	0.54	-0.2
1,557,999	+		MMJJ_RS08465	0.58	-0.6
1,558,014	-		MMJJ_RS08465	0.59	+0.2
1,558,048	-		MMJJ_RS08465	0.60	-0.1
1,558,048	-		MMJJ_RS08465	0.60	+0.1
1,558,055	+		MMJJ_RS08465	0.61	+0.2
1,558,055	+		MMJJ_RS08465	0.61	+0.4
1,558,182	-		MMJJ_RS08465	0.65	+0.7
1,558,182	-		MMJJ_RS08465	0.65	+1.0
1,558,210	-		MMJJ_RS08465	0.66	+0.2
1,558,216	-		MMJJ_RS08465	0.67	+0.6
1,558,217	+		MMJJ_RS08465	0.67	+0.9
1,558,253	+		MMJJ_RS08465	0.68	+0.2
1,558,298	+		MMJJ_RS08465	0.70	+0.1
1,558,301	-		MMJJ_RS08465	0.70	-0.1
1,558,304	-		MMJJ_RS08465	0.70	+0.1
1,558,304	-		MMJJ_RS08465	0.70	+0.9
1,558,325	-		MMJJ_RS08465	0.71	+0.1
1,558,326	+		MMJJ_RS08465	0.71	+0.0
1,558,326	+		MMJJ_RS08465	0.71	-0.5
1,558,332	+		MMJJ_RS08465	0.71	-0.3
1,558,338	-		MMJJ_RS08465	0.71	+1.1
1,558,338	-		MMJJ_RS08465	0.71	+0.8
1,558,339	+		MMJJ_RS08465	0.71	+0.5
1,558,339	+		MMJJ_RS08465	0.71	-0.8
1,558,358	+		MMJJ_RS08465	0.72	-0.5
1,558,358	+		MMJJ_RS08465	0.72	+0.4
1,558,395	-		MMJJ_RS08465	0.74	-0.4
1,558,396	+		MMJJ_RS08465	0.74	+0.3
1,558,475	+		MMJJ_RS08465	0.77	+0.3
1,558,502	-		MMJJ_RS08465	0.78	-0.7
1,558,503	+		MMJJ_RS08465	0.78	+0.1
1,558,503	+		MMJJ_RS08465	0.78	+0.4
1,558,504	-		MMJJ_RS08465	0.78	+0.3
1,558,504	-		MMJJ_RS08465	0.78	+1.3
1,558,504	-		MMJJ_RS08465	0.78	+0.4
1,558,505	+		MMJJ_RS08465	0.78	+0.7
1,558,508	-		MMJJ_RS08465	0.78	+0.2
1,558,509	+		MMJJ_RS08465	0.78	+0.5
1,558,509	+		MMJJ_RS08465	0.78	+0.0
1,558,605	+		MMJJ_RS08465	0.82	+0.0
1,558,608	+		MMJJ_RS08465	0.82	+0.1
1,558,633	-		MMJJ_RS08465	0.83	-0.2
1,558,701	+		MMJJ_RS08465	0.85	-0.2
1,558,711	-		MMJJ_RS08465	0.86	+0.0
1,558,821	-		MMJJ_RS08465	0.90	-0.1
1,558,821	-		MMJJ_RS08465	0.90	-0.6
1,558,821	-		MMJJ_RS08465	0.90	+0.0
1,558,821	-		MMJJ_RS08465	0.90	+0.4
1,558,821	-		MMJJ_RS08465	0.90	+0.4
1,558,822	+		MMJJ_RS08465	0.90	+0.5
1,558,822	+		MMJJ_RS08465	0.90	+0.3
1,558,823	-		MMJJ_RS08465	0.90	-0.3
1,558,824	+		MMJJ_RS08465	0.90	-0.4
1,558,830	-				+0.1
1,558,830	-				+0.1
1,558,831	+				-0.1
1,558,835	+				+1.4
1,558,882	-				-0.1
1,558,939	-				-0.2
1,558,955	-				-0.0
1,558,993	+				-0.3
1,559,000	+				-0.4
1,559,027	+				-0.4
1,559,030	-				+0.2
1,559,060	-				+0.2
1,559,069	-				+0.1
1,559,128	-				-0.2
1,559,129	+				-0.5
1,559,129	+				-0.1
1,559,144	+				+0.4
1,559,144	+				-0.1
1,559,144	+				+0.0
1,559,164	-				-0.5
1,559,165	+				-0.1
1,559,165	+				-0.4
1,559,186	-				-0.1
1,559,186	-				+0.3
1,559,209	-				-0.3
1,559,210	+				-0.4
1,559,227	+				+0.3
1,559,230	-				-0.3
1,559,231	+				+0.0
1,559,231	+				+0.5
1,559,231	+				+0.3
1,559,231	+				+0.1
1,559,231	+				-0.2
1,559,253	+				+0.3
1,559,253	+				+0.1
1,559,258	-				+1.0
1,559,258	-				+0.7
1,559,259	+				+1.1
1,559,260	-				-0.5
1,559,260	-				-0.1
1,559,260	-				-0.4
1,559,260	-				+0.6
1,559,260	-				-0.1
1,559,260	-				+0.3
1,559,260	-				+0.7
1,559,261	+				-0.3
1,559,261	+				-0.2
1,559,261	+				+0.1
1,559,261	+				-0.2
1,559,261	+				-0.1
1,559,264	-				+0.6
1,559,264	-				-0.3
1,559,265	+				-0.1
1,559,315	-				-0.4
1,559,363	-		MMJJ_RS08470	0.27	-0.2
1,559,482	-		MMJJ_RS08470	0.75	-0.0
1,559,535	+				+1.1
1,559,542	-				-0.4
1,559,543	+				+0.2
1,559,572	-				+0.7
1,559,572	-				+0.8
1,559,588	+				+0.3
1,559,588	+				-1.4
1,559,609	+				-0.2
1,559,610	-				+0.8
1,559,611	+				-0.6
1,559,611	+				+0.0
1,559,611	+				+0.4
1,559,653	-				-0.3
1,559,695	-				-0.9
1,559,701	+				+0.0
1,559,701	+				+0.0
1,560,078	+		MMJJ_RS08475	0.58	-2.8