Experiment: Formate no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01920 and MMJJ_RS01925 are separated by 157 nucleotides MMJJ_RS01925 and MMJJ_RS01930 are separated by 17 nucleotides MMJJ_RS01930 and MMJJ_RS01935 are separated by 193 nucleotides
MMJJ_RS01920: MMJJ_RS01920 - phosphoglycerate mutase, at 367,404 to 368,690
_RS01920
MMJJ_RS01925: MMJJ_RS01925 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 368,848 to 369,540
_RS01925
MMJJ_RS01930: MMJJ_RS01930 - Pre-mRNA processing ribonucleoprotein, at 369,558 to 370,988
_RS01930
MMJJ_RS01935: MMJJ_RS01935 - O-phosphoseryl-tRNA(Sec) selenium transferase, at 371,182 to 372,492
_RS01935
Position (kb) 369
370
371 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 368.617 kb on + strand at 368.704 kb on + strand at 368.707 kb on - strand at 368.708 kb on + strand at 368.708 kb on + strand at 368.711 kb on + strand at 368.719 kb on - strand at 368.720 kb on + strand at 368.720 kb on + strand at 368.729 kb on + strand at 368.729 kb on + strand at 368.729 kb on + strand at 368.736 kb on - strand at 368.737 kb on + strand at 368.740 kb on + strand at 368.748 kb on - strand at 368.750 kb on - strand at 368.750 kb on - strand at 368.751 kb on + strand at 368.751 kb on + strand at 368.751 kb on + strand at 368.752 kb on - strand at 368.752 kb on - strand at 368.752 kb on - strand at 368.753 kb on + strand at 368.758 kb on - strand at 368.765 kb on + strand at 368.784 kb on - strand at 368.784 kb on - strand at 368.785 kb on + strand at 368.786 kb on - strand at 368.787 kb on + strand at 368.787 kb on + strand at 368.788 kb on - strand at 368.788 kb on - strand at 368.788 kb on - strand at 368.788 kb on - strand at 368.789 kb on + strand at 368.789 kb on + strand at 368.807 kb on - strand at 368.823 kb on + strand at 368.828 kb on - strand at 368.836 kb on - strand at 368.836 kb on - strand at 368.840 kb on + strand at 368.842 kb on + strand at 368.849 kb on - strand at 368.849 kb on - strand at 368.985 kb on - strand, within MMJJ_RS01925 at 369.010 kb on + strand, within MMJJ_RS01925 at 369.237 kb on + strand, within MMJJ_RS01925 at 369.258 kb on - strand, within MMJJ_RS01925 at 369.280 kb on + strand, within MMJJ_RS01925 at 369.388 kb on - strand, within MMJJ_RS01925 at 369.393 kb on - strand, within MMJJ_RS01925 at 369.395 kb on - strand, within MMJJ_RS01925 at 369.395 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.401 kb on + strand, within MMJJ_RS01925 at 369.402 kb on - strand, within MMJJ_RS01925 at 369.414 kb on + strand, within MMJJ_RS01925 at 369.414 kb on + strand, within MMJJ_RS01925 at 369.415 kb on - strand, within MMJJ_RS01925 at 369.415 kb on - strand, within MMJJ_RS01925 at 369.418 kb on - strand, within MMJJ_RS01925 at 369.451 kb on - strand, within MMJJ_RS01925 at 369.475 kb on + strand at 369.475 kb on + strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.559 kb on - strand at 369.560 kb on + strand at 369.815 kb on - strand, within MMJJ_RS01930 at 369.951 kb on + strand, within MMJJ_RS01930 at 370.044 kb on - strand, within MMJJ_RS01930 at 370.045 kb on + strand, within MMJJ_RS01930 at 370.063 kb on + strand, within MMJJ_RS01930 at 370.064 kb on - strand, within MMJJ_RS01930 at 370.099 kb on + strand, within MMJJ_RS01930 at 370.303 kb on + strand, within MMJJ_RS01930 at 370.474 kb on - strand, within MMJJ_RS01930 at 370.497 kb on + strand, within MMJJ_RS01930 at 370.516 kb on - strand, within MMJJ_RS01930 at 370.516 kb on - strand, within MMJJ_RS01930 at 370.519 kb on + strand, within MMJJ_RS01930 at 370.607 kb on - strand, within MMJJ_RS01930 at 370.608 kb on + strand, within MMJJ_RS01930 at 370.727 kb on + strand, within MMJJ_RS01930 at 370.770 kb on + strand, within MMJJ_RS01930 at 370.770 kb on + strand, within MMJJ_RS01930 at 370.773 kb on + strand, within MMJJ_RS01930 at 370.864 kb on + strand at 370.988 kb on - strand at 371.009 kb on + strand at 371.031 kb on - strand at 371.032 kb on + strand at 371.053 kb on - strand at 371.053 kb on - strand at 371.058 kb on + strand at 371.073 kb on - strand at 371.076 kb on - strand at 371.079 kb on - strand at 371.083 kb on - strand at 371.083 kb on - strand at 371.084 kb on + strand at 371.106 kb on + strand at 371.180 kb on - strand at 371.365 kb on + strand, within MMJJ_RS01935 at 371.410 kb on - strand, within MMJJ_RS01935 at 371.410 kb on - strand, within MMJJ_RS01935 at 371.657 kb on - strand, within MMJJ_RS01935 at 371.718 kb on - strand, within MMJJ_RS01935 at 371.758 kb on - strand, within MMJJ_RS01935
Per-strain Table
Position Strand Gene LocusTag Fraction Formate no stress control remove 368,617 + +0.1 368,704 + +0.1 368,707 - +0.4 368,708 + +0.3 368,708 + -0.4 368,711 + +0.1 368,719 - -0.3 368,720 + +0.0 368,720 + +0.8 368,729 + -0.2 368,729 + +0.3 368,729 + +0.6 368,736 - -0.3 368,737 + +0.1 368,740 + -0.2 368,748 - +0.1 368,750 - -0.2 368,750 - -0.1 368,751 + +0.5 368,751 + +0.1 368,751 + -0.2 368,752 - +0.1 368,752 - -0.1 368,752 - -0.1 368,753 + -0.3 368,758 - -1.0 368,765 + +0.0 368,784 - -0.1 368,784 - +0.5 368,785 + +0.3 368,786 - -0.1 368,787 + -0.3 368,787 + +0.3 368,788 - +0.1 368,788 - -0.2 368,788 - +0.5 368,788 - +0.1 368,789 + +0.2 368,789 + +0.5 368,807 - +0.7 368,823 + +0.3 368,828 - -0.3 368,836 - +0.1 368,836 - -0.2 368,840 + -0.1 368,842 + -0.2 368,849 - +0.2 368,849 - -0.2 368,985 - MMJJ_RS01925 0.20 -1.6 369,010 + MMJJ_RS01925 0.23 -0.6 369,237 + MMJJ_RS01925 0.56 -0.4 369,258 - MMJJ_RS01925 0.59 -0.3 369,280 + MMJJ_RS01925 0.62 -0.6 369,388 - MMJJ_RS01925 0.78 -1.2 369,393 - MMJJ_RS01925 0.79 -0.4 369,395 - MMJJ_RS01925 0.79 -1.4 369,395 - MMJJ_RS01925 0.79 -1.1 369,400 - MMJJ_RS01925 0.80 -1.8 369,400 - MMJJ_RS01925 0.80 -0.6 369,400 - MMJJ_RS01925 0.80 -0.1 369,400 - MMJJ_RS01925 0.80 -0.7 369,401 + MMJJ_RS01925 0.80 -1.9 369,402 - MMJJ_RS01925 0.80 -1.1 369,414 + MMJJ_RS01925 0.82 -1.3 369,414 + MMJJ_RS01925 0.82 -1.3 369,415 - MMJJ_RS01925 0.82 -2.2 369,415 - MMJJ_RS01925 0.82 -1.3 369,418 - MMJJ_RS01925 0.82 -1.0 369,451 - MMJJ_RS01925 0.87 -0.3 369,475 + -2.9 369,475 + -1.6 369,502 - -1.5 369,502 - -0.7 369,502 - -2.0 369,502 - -1.5 369,502 - -0.8 369,503 + -2.2 369,503 + -0.8 369,503 + +0.3 369,503 + -1.1 369,503 + -2.9 369,559 - -0.6 369,560 + -1.1 369,815 - MMJJ_RS01930 0.18 -1.7 369,951 + MMJJ_RS01930 0.27 -1.1 370,044 - MMJJ_RS01930 0.34 +0.2 370,045 + MMJJ_RS01930 0.34 -0.9 370,063 + MMJJ_RS01930 0.35 -1.6 370,064 - MMJJ_RS01930 0.35 -2.0 370,099 + MMJJ_RS01930 0.38 -1.4 370,303 + MMJJ_RS01930 0.52 -1.0 370,474 - MMJJ_RS01930 0.64 -0.7 370,497 + MMJJ_RS01930 0.66 +0.3 370,516 - MMJJ_RS01930 0.67 -0.6 370,516 - MMJJ_RS01930 0.67 -1.5 370,519 + MMJJ_RS01930 0.67 -1.9 370,607 - MMJJ_RS01930 0.73 -0.4 370,608 + MMJJ_RS01930 0.73 -1.6 370,727 + MMJJ_RS01930 0.82 -0.4 370,770 + MMJJ_RS01930 0.85 -0.4 370,770 + MMJJ_RS01930 0.85 -1.2 370,773 + MMJJ_RS01930 0.85 -0.3 370,864 + -0.5 370,988 - -1.3 371,009 + -0.1 371,031 - +0.1 371,032 + -1.2 371,053 - +0.3 371,053 - +0.9 371,058 + -0.1 371,073 - -0.4 371,076 - +0.2 371,079 - +0.3 371,083 - -0.2 371,083 - -0.0 371,084 + -0.9 371,106 + -0.5 371,180 - -2.6 371,365 + MMJJ_RS01935 0.14 -2.1 371,410 - MMJJ_RS01935 0.17 -5.0 371,410 - MMJJ_RS01935 0.17 -2.4 371,657 - MMJJ_RS01935 0.36 -1.6 371,718 - MMJJ_RS01935 0.41 -3.1 371,758 - MMJJ_RS01935 0.44 -3.8
Or see this region's nucleotide sequence