Experiment: Formate no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01495 and MMJJ_RS01500 are separated by 121 nucleotides MMJJ_RS01500 and MMJJ_RS01505 are separated by 122 nucleotides MMJJ_RS01505 and MMJJ_RS01510 are separated by 95 nucleotides
MMJJ_RS01495: MMJJ_RS01495 - Na+/H+ antiporter NhaC family protein, at 292,328 to 293,905
_RS01495
MMJJ_RS01500: MMJJ_RS01500 - transcriptional regulator, at 294,027 to 295,007
_RS01500
MMJJ_RS01505: MMJJ_RS01505 - DUF2124 domain-containing protein, at 295,130 to 295,606
_RS01505
MMJJ_RS01510: MMJJ_RS01510 - ATP-binding protein, at 295,702 to 297,099
_RS01510
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 293.073 kb on - strand, within MMJJ_RS01495 at 293.073 kb on - strand, within MMJJ_RS01495 at 293.124 kb on - strand, within MMJJ_RS01495 at 293.154 kb on - strand, within MMJJ_RS01495 at 293.160 kb on - strand, within MMJJ_RS01495 at 293.161 kb on + strand, within MMJJ_RS01495 at 293.164 kb on + strand, within MMJJ_RS01495 at 293.195 kb on + strand, within MMJJ_RS01495 at 293.309 kb on - strand, within MMJJ_RS01495 at 293.393 kb on + strand, within MMJJ_RS01495 at 293.393 kb on + strand, within MMJJ_RS01495 at 293.403 kb on - strand, within MMJJ_RS01495 at 293.404 kb on + strand, within MMJJ_RS01495 at 293.404 kb on + strand, within MMJJ_RS01495 at 293.404 kb on + strand, within MMJJ_RS01495 at 293.418 kb on - strand, within MMJJ_RS01495 at 293.419 kb on + strand, within MMJJ_RS01495 at 293.427 kb on - strand, within MMJJ_RS01495 at 293.428 kb on + strand, within MMJJ_RS01495 at 293.428 kb on + strand, within MMJJ_RS01495 at 293.428 kb on + strand, within MMJJ_RS01495 at 293.428 kb on + strand, within MMJJ_RS01495 at 293.453 kb on - strand, within MMJJ_RS01495 at 293.454 kb on + strand, within MMJJ_RS01495 at 293.454 kb on + strand, within MMJJ_RS01495 at 293.454 kb on + strand, within MMJJ_RS01495 at 293.506 kb on + strand, within MMJJ_RS01495 at 293.506 kb on + strand, within MMJJ_RS01495 at 293.506 kb on + strand, within MMJJ_RS01495 at 293.545 kb on - strand, within MMJJ_RS01495 at 293.557 kb on - strand, within MMJJ_RS01495 at 293.558 kb on + strand, within MMJJ_RS01495 at 293.658 kb on - strand, within MMJJ_RS01495 at 293.658 kb on - strand, within MMJJ_RS01495 at 293.658 kb on - strand, within MMJJ_RS01495 at 293.658 kb on - strand, within MMJJ_RS01495 at 293.658 kb on - strand, within MMJJ_RS01495 at 293.659 kb on + strand, within MMJJ_RS01495 at 293.659 kb on + strand, within MMJJ_RS01495 at 293.659 kb on + strand, within MMJJ_RS01495 at 293.660 kb on - strand, within MMJJ_RS01495 at 293.660 kb on - strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.661 kb on + strand, within MMJJ_RS01495 at 293.690 kb on + strand, within MMJJ_RS01495 at 293.690 kb on + strand, within MMJJ_RS01495 at 293.787 kb on - strand at 293.792 kb on - strand at 293.793 kb on + strand at 293.793 kb on + strand at 293.803 kb on + strand at 293.807 kb on - strand at 293.807 kb on - strand at 293.808 kb on + strand at 293.821 kb on + strand at 293.832 kb on - strand at 293.833 kb on + strand at 293.842 kb on - strand at 293.843 kb on + strand at 293.843 kb on + strand at 293.846 kb on + strand at 293.860 kb on + strand at 293.872 kb on + strand at 293.873 kb on - strand at 293.873 kb on - strand at 293.873 kb on - strand at 293.873 kb on - strand at 293.874 kb on + strand at 293.874 kb on + strand at 293.875 kb on - strand at 293.875 kb on - strand at 293.876 kb on + strand at 293.876 kb on + strand at 293.876 kb on + strand at 293.876 kb on + strand at 293.908 kb on - strand at 293.909 kb on + strand at 293.910 kb on - strand at 293.961 kb on + strand at 293.987 kb on - strand at 293.987 kb on - strand at 294.025 kb on + strand at 294.028 kb on - strand at 294.073 kb on + strand at 294.103 kb on + strand at 294.104 kb on - strand at 294.110 kb on - strand at 294.110 kb on - strand at 294.111 kb on + strand at 294.116 kb on - strand at 294.117 kb on + strand at 294.214 kb on + strand, within MMJJ_RS01500 at 294.214 kb on + strand, within MMJJ_RS01500 at 294.239 kb on - strand, within MMJJ_RS01500 at 294.245 kb on - strand, within MMJJ_RS01500 at 294.254 kb on - strand, within MMJJ_RS01500 at 294.328 kb on + strand, within MMJJ_RS01500 at 294.433 kb on + strand, within MMJJ_RS01500 at 294.453 kb on - strand, within MMJJ_RS01500 at 294.487 kb on - strand, within MMJJ_RS01500 at 294.542 kb on + strand, within MMJJ_RS01500 at 294.545 kb on - strand, within MMJJ_RS01500 at 294.546 kb on + strand, within MMJJ_RS01500 at 294.547 kb on - strand, within MMJJ_RS01500 at 294.547 kb on - strand, within MMJJ_RS01500 at 294.573 kb on - strand, within MMJJ_RS01500 at 294.713 kb on - strand, within MMJJ_RS01500 at 294.748 kb on + strand, within MMJJ_RS01500 at 294.889 kb on + strand, within MMJJ_RS01500 at 294.908 kb on - strand, within MMJJ_RS01500 at 294.994 kb on + strand at 295.007 kb on - strand at 295.014 kb on - strand at 295.028 kb on - strand at 295.038 kb on + strand at 295.050 kb on + strand at 295.067 kb on - strand at 295.090 kb on + strand at 295.091 kb on - strand at 295.093 kb on - strand at 295.093 kb on - strand at 295.093 kb on - strand at 295.093 kb on - strand at 295.093 kb on - strand at 295.094 kb on + strand at 295.096 kb on - strand at 295.096 kb on - strand at 295.096 kb on - strand at 295.096 kb on - strand at 295.096 kb on - strand at 295.096 kb on - strand at 295.097 kb on + strand at 295.097 kb on + strand at 295.097 kb on + strand at 295.097 kb on + strand at 295.100 kb on + strand at 295.100 kb on + strand at 295.108 kb on + strand at 295.282 kb on - strand, within MMJJ_RS01505 at 295.295 kb on - strand, within MMJJ_RS01505 at 295.295 kb on - strand, within MMJJ_RS01505 at 295.317 kb on - strand, within MMJJ_RS01505 at 295.366 kb on - strand, within MMJJ_RS01505 at 295.367 kb on + strand, within MMJJ_RS01505 at 295.378 kb on - strand, within MMJJ_RS01505 at 295.378 kb on - strand, within MMJJ_RS01505 at 295.379 kb on + strand, within MMJJ_RS01505 at 295.391 kb on + strand, within MMJJ_RS01505 at 295.444 kb on - strand, within MMJJ_RS01505 at 295.563 kb on - strand at 295.566 kb on - strand at 295.567 kb on + strand at 295.609 kb on - strand at 295.609 kb on - strand at 295.610 kb on + strand at 295.610 kb on + strand at 295.610 kb on + strand at 295.610 kb on + strand at 295.637 kb on + strand at 295.655 kb on - strand at 295.661 kb on + strand at 295.667 kb on - strand at 295.667 kb on - strand at 295.668 kb on + strand at 295.668 kb on + strand at 295.671 kb on - strand at 295.671 kb on - strand at 295.672 kb on + strand at 295.679 kb on - strand at 295.700 kb on - strand at 295.701 kb on + strand at 295.701 kb on + strand at 295.706 kb on - strand at 295.706 kb on - strand at 295.707 kb on + strand at 295.707 kb on + strand at 295.788 kb on - strand at 295.789 kb on + strand at 295.789 kb on + strand at 295.793 kb on - strand at 295.794 kb on + strand at 295.796 kb on + strand at 295.797 kb on - strand at 295.820 kb on - strand at 295.839 kb on - strand at 295.839 kb on - strand at 295.841 kb on - strand at 295.845 kb on + strand, within MMJJ_RS01510 at 295.863 kb on - strand, within MMJJ_RS01510 at 295.920 kb on - strand, within MMJJ_RS01510 at 295.923 kb on + strand, within MMJJ_RS01510 at 295.954 kb on + strand, within MMJJ_RS01510 at 295.966 kb on - strand, within MMJJ_RS01510 at 295.966 kb on - strand, within MMJJ_RS01510 at 295.967 kb on + strand, within MMJJ_RS01510 at 295.967 kb on + strand, within MMJJ_RS01510 at 295.967 kb on + strand, within MMJJ_RS01510 at 295.986 kb on + strand, within MMJJ_RS01510 at 296.001 kb on + strand, within MMJJ_RS01510
Per-strain Table
Position Strand Gene LocusTag Fraction Formate no stress control remove 293,073 - MMJJ_RS01495 0.47 -0.9 293,073 - MMJJ_RS01495 0.47 +0.3 293,124 - MMJJ_RS01495 0.50 -0.9 293,154 - MMJJ_RS01495 0.52 -1.0 293,160 - MMJJ_RS01495 0.53 -1.3 293,161 + MMJJ_RS01495 0.53 -0.1 293,164 + MMJJ_RS01495 0.53 -0.2 293,195 + MMJJ_RS01495 0.55 -0.5 293,309 - MMJJ_RS01495 0.62 -0.4 293,393 + MMJJ_RS01495 0.67 -0.3 293,393 + MMJJ_RS01495 0.67 -0.2 293,403 - MMJJ_RS01495 0.68 -0.2 293,404 + MMJJ_RS01495 0.68 -0.5 293,404 + MMJJ_RS01495 0.68 -0.4 293,404 + MMJJ_RS01495 0.68 +0.1 293,418 - MMJJ_RS01495 0.69 -1.1 293,419 + MMJJ_RS01495 0.69 +0.0 293,427 - MMJJ_RS01495 0.70 -0.4 293,428 + MMJJ_RS01495 0.70 -0.8 293,428 + MMJJ_RS01495 0.70 +0.4 293,428 + MMJJ_RS01495 0.70 -0.5 293,428 + MMJJ_RS01495 0.70 -0.3 293,453 - MMJJ_RS01495 0.71 -0.2 293,454 + MMJJ_RS01495 0.71 -0.5 293,454 + MMJJ_RS01495 0.71 -1.2 293,454 + MMJJ_RS01495 0.71 -0.3 293,506 + MMJJ_RS01495 0.75 -0.9 293,506 + MMJJ_RS01495 0.75 -0.5 293,506 + MMJJ_RS01495 0.75 -0.0 293,545 - MMJJ_RS01495 0.77 -0.6 293,557 - MMJJ_RS01495 0.78 -0.0 293,558 + MMJJ_RS01495 0.78 -0.3 293,658 - MMJJ_RS01495 0.84 -0.7 293,658 - MMJJ_RS01495 0.84 +0.5 293,658 - MMJJ_RS01495 0.84 -1.0 293,658 - MMJJ_RS01495 0.84 -0.7 293,658 - MMJJ_RS01495 0.84 +0.1 293,659 + MMJJ_RS01495 0.84 -0.7 293,659 + MMJJ_RS01495 0.84 -0.6 293,659 + MMJJ_RS01495 0.84 +0.2 293,660 - MMJJ_RS01495 0.84 +0.3 293,660 - MMJJ_RS01495 0.84 -0.7 293,661 + MMJJ_RS01495 0.84 -0.5 293,661 + MMJJ_RS01495 0.84 -0.6 293,661 + MMJJ_RS01495 0.84 +0.5 293,661 + MMJJ_RS01495 0.84 -0.4 293,661 + MMJJ_RS01495 0.84 -0.9 293,661 + MMJJ_RS01495 0.84 -0.2 293,661 + MMJJ_RS01495 0.84 +0.4 293,661 + MMJJ_RS01495 0.84 -0.6 293,661 + MMJJ_RS01495 0.84 -0.5 293,690 + MMJJ_RS01495 0.86 -1.1 293,690 + MMJJ_RS01495 0.86 -0.6 293,787 - -0.7 293,792 - +0.3 293,793 + -0.3 293,793 + -0.4 293,803 + +0.2 293,807 - -0.2 293,807 - -0.7 293,808 + -0.2 293,821 + -0.9 293,832 - -0.7 293,833 + -0.7 293,842 - -0.4 293,843 + +0.1 293,843 + -0.1 293,846 + +0.1 293,860 + -0.5 293,872 + +0.1 293,873 - -0.6 293,873 - -0.6 293,873 - -0.5 293,873 - +0.8 293,874 + +0.2 293,874 + -0.9 293,875 - -1.2 293,875 - -0.3 293,876 + -0.5 293,876 + -0.4 293,876 + -0.1 293,876 + -0.1 293,908 - -0.5 293,909 + -0.5 293,910 - +0.8 293,961 + -0.0 293,987 - +0.4 293,987 - -0.8 294,025 + -0.2 294,028 - +0.1 294,073 + -0.7 294,103 + -1.9 294,104 - -1.9 294,110 - -0.7 294,110 - -1.2 294,111 + -0.9 294,116 - -0.8 294,117 + -1.1 294,214 + MMJJ_RS01500 0.19 -1.5 294,214 + MMJJ_RS01500 0.19 -1.8 294,239 - MMJJ_RS01500 0.22 +0.5 294,245 - MMJJ_RS01500 0.22 -2.5 294,254 - MMJJ_RS01500 0.23 -3.3 294,328 + MMJJ_RS01500 0.31 -0.8 294,433 + MMJJ_RS01500 0.41 -0.4 294,453 - MMJJ_RS01500 0.43 -0.8 294,487 - MMJJ_RS01500 0.47 -1.4 294,542 + MMJJ_RS01500 0.52 -1.7 294,545 - MMJJ_RS01500 0.53 -1.0 294,546 + MMJJ_RS01500 0.53 -3.0 294,547 - MMJJ_RS01500 0.53 -2.4 294,547 - MMJJ_RS01500 0.53 -1.6 294,573 - MMJJ_RS01500 0.56 -2.5 294,713 - MMJJ_RS01500 0.70 -2.0 294,748 + MMJJ_RS01500 0.73 -1.7 294,889 + MMJJ_RS01500 0.88 -1.5 294,908 - MMJJ_RS01500 0.90 -2.7 294,994 + -0.8 295,007 - -2.0 295,014 - -2.0 295,028 - -0.6 295,038 + -1.3 295,050 + -2.4 295,067 - -0.6 295,090 + -0.9 295,091 - +0.1 295,093 - -0.1 295,093 - +0.1 295,093 - +0.6 295,093 - +0.2 295,093 - +0.1 295,094 + +0.2 295,096 - +0.2 295,096 - +0.0 295,096 - +0.2 295,096 - +0.2 295,096 - -0.3 295,096 - -0.4 295,097 + +0.1 295,097 + +0.5 295,097 + -0.0 295,097 + +0.3 295,100 + -0.2 295,100 + +0.4 295,108 + -0.1 295,282 - MMJJ_RS01505 0.32 +0.0 295,295 - MMJJ_RS01505 0.35 -0.3 295,295 - MMJJ_RS01505 0.35 -0.2 295,317 - MMJJ_RS01505 0.39 -0.1 295,366 - MMJJ_RS01505 0.49 -0.0 295,367 + MMJJ_RS01505 0.50 +0.0 295,378 - MMJJ_RS01505 0.52 +0.1 295,378 - MMJJ_RS01505 0.52 -0.1 295,379 + MMJJ_RS01505 0.52 -0.0 295,391 + MMJJ_RS01505 0.55 -0.3 295,444 - MMJJ_RS01505 0.66 -0.9 295,563 - +0.2 295,566 - -0.0 295,567 + +0.2 295,609 - +0.1 295,609 - +0.6 295,610 + -1.0 295,610 + -0.2 295,610 + -0.5 295,610 + +1.1 295,637 + +0.3 295,655 - +0.1 295,661 + -0.3 295,667 - +0.4 295,667 - -0.2 295,668 + -0.2 295,668 + +0.5 295,671 - -0.3 295,671 - +0.2 295,672 + +0.1 295,679 - +0.2 295,700 - -0.1 295,701 + +0.3 295,701 + -0.3 295,706 - +1.2 295,706 - -0.1 295,707 + -0.3 295,707 + -0.5 295,788 - -0.3 295,789 + -0.5 295,789 + +0.4 295,793 - +0.3 295,794 + -1.5 295,796 + -0.3 295,797 - -0.3 295,820 - -0.4 295,839 - -0.3 295,839 - -0.4 295,841 - +0.2 295,845 + MMJJ_RS01510 0.10 +0.7 295,863 - MMJJ_RS01510 0.12 +0.5 295,920 - MMJJ_RS01510 0.16 +0.3 295,923 + MMJJ_RS01510 0.16 -0.2 295,954 + MMJJ_RS01510 0.18 -0.3 295,966 - MMJJ_RS01510 0.19 -0.2 295,966 - MMJJ_RS01510 0.19 +0.0 295,967 + MMJJ_RS01510 0.19 +0.5 295,967 + MMJJ_RS01510 0.19 -0.1 295,967 + MMJJ_RS01510 0.19 -1.3 295,986 + MMJJ_RS01510 0.20 -0.1 296,001 + MMJJ_RS01510 0.21 -0.6
Or see this region's nucleotide sequence