Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05430

Experiment: Formate 100 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05425 and MMJJ_RS05430 are separated by 380 nucleotidesMMJJ_RS05430 and MMJJ_RS05435 are separated by 127 nucleotides MMJJ_RS05425: MMJJ_RS05425 - geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase, at 1,008,105 to 1,008,875 _RS05425 MMJJ_RS05430: MMJJ_RS05430 - 3-dehydroquinate synthase II, at 1,009,256 to 1,010,341 _RS05430 MMJJ_RS05435: MMJJ_RS05435 - DUF2254 domain-containing protein, at 1,010,469 to 1,012,052 _RS05435 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -2 -1 0 1at 1008.654 kb on - strand, within MMJJ_RS05425at 1008.655 kb on + strandat 1008.705 kb on - strand, within MMJJ_RS05425at 1008.776 kb on + strandat 1008.900 kb on - strandat 1008.941 kb on - strandat 1008.971 kb on + strandat 1008.991 kb on - strandat 1008.994 kb on - strandat 1008.995 kb on + strandat 1008.997 kb on - strandat 1008.999 kb on - strandat 1009.022 kb on - strandat 1009.022 kb on - strandat 1009.022 kb on - strandat 1009.023 kb on + strandat 1009.023 kb on + strandat 1009.028 kb on - strandat 1009.028 kb on - strandat 1009.028 kb on - strandat 1009.028 kb on - strandat 1009.029 kb on + strandat 1009.029 kb on + strandat 1009.030 kb on - strandat 1009.030 kb on - strandat 1009.030 kb on - strandat 1009.031 kb on + strandat 1009.045 kb on - strandat 1009.050 kb on + strandat 1009.050 kb on + strandat 1009.054 kb on + strandat 1009.072 kb on - strandat 1009.073 kb on + strandat 1009.077 kb on + strandat 1009.098 kb on - strandat 1009.099 kb on + strandat 1009.099 kb on + strandat 1009.121 kb on - strandat 1009.138 kb on - strandat 1009.140 kb on - strandat 1009.140 kb on - strandat 1009.140 kb on - strandat 1009.140 kb on - strandat 1009.141 kb on + strandat 1009.183 kb on + strandat 1009.219 kb on - strandat 1009.267 kb on - strandat 1010.401 kb on - strandat 1010.410 kb on - strandat 1010.414 kb on - strandat 1010.415 kb on + strandat 1010.420 kb on - strandat 1010.425 kb on + strandat 1010.425 kb on + strandat 1010.430 kb on - strandat 1010.431 kb on + strandat 1010.431 kb on + strandat 1010.431 kb on + strandat 1010.434 kb on - strandat 1010.435 kb on + strandat 1010.439 kb on - strandat 1010.439 kb on - strandat 1010.439 kb on - strandat 1010.439 kb on - strandat 1010.440 kb on + strandat 1010.440 kb on + strandat 1010.440 kb on + strandat 1010.443 kb on - strandat 1010.443 kb on - strandat 1010.444 kb on + strandat 1010.447 kb on - strandat 1010.448 kb on + strandat 1010.486 kb on - strandat 1010.511 kb on - strandat 1010.540 kb on + strandat 1010.545 kb on - strandat 1010.574 kb on - strandat 1010.578 kb on + strandat 1010.578 kb on + strandat 1010.623 kb on - strandat 1010.628 kb on - strand, within MMJJ_RS05435at 1010.628 kb on - strand, within MMJJ_RS05435at 1010.629 kb on + strand, within MMJJ_RS05435at 1010.630 kb on - strand, within MMJJ_RS05435at 1010.630 kb on - strand, within MMJJ_RS05435at 1010.631 kb on + strand, within MMJJ_RS05435at 1010.631 kb on + strand, within MMJJ_RS05435at 1010.631 kb on + strand, within MMJJ_RS05435at 1010.631 kb on + strand, within MMJJ_RS05435at 1010.635 kb on - strand, within MMJJ_RS05435at 1010.711 kb on + strand, within MMJJ_RS05435at 1010.722 kb on + strand, within MMJJ_RS05435at 1010.746 kb on - strand, within MMJJ_RS05435at 1010.751 kb on + strand, within MMJJ_RS05435at 1010.772 kb on + strand, within MMJJ_RS05435at 1010.772 kb on + strand, within MMJJ_RS05435at 1010.773 kb on - strand, within MMJJ_RS05435at 1010.776 kb on - strand, within MMJJ_RS05435at 1010.781 kb on - strand, within MMJJ_RS05435at 1010.781 kb on - strand, within MMJJ_RS05435at 1010.781 kb on - strand, within MMJJ_RS05435at 1010.781 kb on - strand, within MMJJ_RS05435at 1010.782 kb on + strand, within MMJJ_RS05435at 1010.782 kb on + strand, within MMJJ_RS05435at 1010.799 kb on - strand, within MMJJ_RS05435at 1010.845 kb on - strand, within MMJJ_RS05435at 1010.850 kb on + strand, within MMJJ_RS05435at 1010.850 kb on + strand, within MMJJ_RS05435at 1010.850 kb on + strand, within MMJJ_RS05435at 1010.859 kb on - strand, within MMJJ_RS05435at 1010.866 kb on - strand, within MMJJ_RS05435at 1010.866 kb on - strand, within MMJJ_RS05435at 1010.866 kb on - strand, within MMJJ_RS05435at 1010.866 kb on - strand, within MMJJ_RS05435at 1010.866 kb on - strand, within MMJJ_RS05435at 1010.871 kb on - strand, within MMJJ_RS05435at 1010.872 kb on + strand, within MMJJ_RS05435at 1010.872 kb on + strand, within MMJJ_RS05435at 1010.872 kb on + strand, within MMJJ_RS05435at 1010.881 kb on - strand, within MMJJ_RS05435at 1010.907 kb on - strand, within MMJJ_RS05435at 1010.908 kb on + strand, within MMJJ_RS05435at 1010.929 kb on - strand, within MMJJ_RS05435at 1010.930 kb on + strand, within MMJJ_RS05435at 1010.951 kb on - strand, within MMJJ_RS05435at 1010.960 kb on + strand, within MMJJ_RS05435at 1010.977 kb on - strand, within MMJJ_RS05435at 1010.977 kb on - strand, within MMJJ_RS05435at 1010.987 kb on + strand, within MMJJ_RS05435at 1011.051 kb on - strandat 1011.051 kb on - strand, within MMJJ_RS05435at 1011.068 kb on - strand, within MMJJ_RS05435at 1011.096 kb on - strand, within MMJJ_RS05435at 1011.099 kb on - strand, within MMJJ_RS05435at 1011.100 kb on + strand, within MMJJ_RS05435at 1011.101 kb on - strand, within MMJJ_RS05435at 1011.101 kb on - strand, within MMJJ_RS05435at 1011.102 kb on + strand, within MMJJ_RS05435at 1011.103 kb on - strand, within MMJJ_RS05435at 1011.104 kb on + strand, within MMJJ_RS05435at 1011.104 kb on + strand, within MMJJ_RS05435at 1011.104 kb on + strandat 1011.104 kb on + strand, within MMJJ_RS05435at 1011.104 kb on + strand, within MMJJ_RS05435at 1011.132 kb on - strand, within MMJJ_RS05435at 1011.132 kb on - strand, within MMJJ_RS05435at 1011.132 kb on - strand, within MMJJ_RS05435at 1011.133 kb on + strand, within MMJJ_RS05435at 1011.175 kb on + strand, within MMJJ_RS05435at 1011.175 kb on + strand, within MMJJ_RS05435at 1011.229 kb on + strand, within MMJJ_RS05435at 1011.229 kb on + strand, within MMJJ_RS05435at 1011.232 kb on - strand, within MMJJ_RS05435at 1011.232 kb on - strand, within MMJJ_RS05435at 1011.232 kb on - strand, within MMJJ_RS05435at 1011.232 kb on - strand, within MMJJ_RS05435at 1011.233 kb on + strand, within MMJJ_RS05435at 1011.233 kb on + strand, within MMJJ_RS05435at 1011.233 kb on + strand, within MMJJ_RS05435at 1011.233 kb on + strand, within MMJJ_RS05435at 1011.233 kb on + strand, within MMJJ_RS05435at 1011.233 kb on + strand, within MMJJ_RS05435at 1011.233 kb on + strand, within MMJJ_RS05435at 1011.243 kb on + strand, within MMJJ_RS05435at 1011.243 kb on + strand, within MMJJ_RS05435at 1011.265 kb on + strand, within MMJJ_RS05435at 1011.299 kb on + strand, within MMJJ_RS05435at 1011.331 kb on - strand, within MMJJ_RS05435at 1011.331 kb on - strand, within MMJJ_RS05435at 1011.331 kb on - strand, within MMJJ_RS05435at 1011.331 kb on - strand, within MMJJ_RS05435at 1011.332 kb on + strand, within MMJJ_RS05435at 1011.332 kb on + strand, within MMJJ_RS05435at 1011.332 kb on + strand, within MMJJ_RS05435

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite
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1,008,654 - MMJJ_RS05425 0.71 -1.9
1,008,655 + -0.8
1,008,705 - MMJJ_RS05425 0.78 -1.3
1,008,776 + -0.6
1,008,900 - +0.5
1,008,941 - +0.9
1,008,971 + +0.3
1,008,991 - -0.3
1,008,994 - -0.0
1,008,995 + -0.1
1,008,997 - -0.4
1,008,999 - -0.4
1,009,022 - -0.3
1,009,022 - +0.5
1,009,022 - +1.0
1,009,023 + +0.1
1,009,023 + +0.0
1,009,028 - -0.1
1,009,028 - -0.5
1,009,028 - -0.3
1,009,028 - -0.1
1,009,029 + -0.3
1,009,029 + +0.1
1,009,030 - -0.8
1,009,030 - +0.1
1,009,030 - +0.3
1,009,031 + +0.1
1,009,045 - -0.5
1,009,050 + +0.2
1,009,050 + -0.2
1,009,054 + +0.2
1,009,072 - -0.3
1,009,073 + -0.2
1,009,077 + +0.4
1,009,098 - -0.3
1,009,099 + +0.3
1,009,099 + -0.2
1,009,121 - -0.2
1,009,138 - -0.7
1,009,140 - +0.8
1,009,140 - -0.1
1,009,140 - +0.8
1,009,140 - +0.1
1,009,141 + +0.5
1,009,183 + -0.1
1,009,219 - -0.4
1,009,267 - +1.5
1,010,401 - +1.5
1,010,410 - -1.6
1,010,414 - +1.2
1,010,415 + -0.7
1,010,420 - +0.4
1,010,425 + -0.4
1,010,425 + -1.4
1,010,430 - +0.3
1,010,431 + -0.2
1,010,431 + -0.5
1,010,431 + +0.3
1,010,434 - -0.2
1,010,435 + -0.2
1,010,439 - +0.5
1,010,439 - +0.3
1,010,439 - -1.0
1,010,439 - +0.1
1,010,440 + +0.3
1,010,440 + -0.3
1,010,440 + -0.8
1,010,443 - -0.5
1,010,443 - -0.4
1,010,444 + +0.7
1,010,447 - +0.3
1,010,448 + +0.1
1,010,486 - +0.2
1,010,511 - -0.7
1,010,540 + +0.7
1,010,545 - +0.1
1,010,574 - +0.0
1,010,578 + +0.4
1,010,578 + -0.3
1,010,623 - +1.1
1,010,628 - MMJJ_RS05435 0.10 +0.1
1,010,628 - MMJJ_RS05435 0.10 +0.5
1,010,629 + MMJJ_RS05435 0.10 +0.1
1,010,630 - MMJJ_RS05435 0.10 -0.3
1,010,630 - MMJJ_RS05435 0.10 -0.2
1,010,631 + MMJJ_RS05435 0.10 +1.3
1,010,631 + MMJJ_RS05435 0.10 +0.6
1,010,631 + MMJJ_RS05435 0.10 -0.2
1,010,631 + MMJJ_RS05435 0.10 +0.2
1,010,635 - MMJJ_RS05435 0.10 +1.1
1,010,711 + MMJJ_RS05435 0.15 -0.6
1,010,722 + MMJJ_RS05435 0.16 +1.0
1,010,746 - MMJJ_RS05435 0.17 -0.8
1,010,751 + MMJJ_RS05435 0.18 -0.3
1,010,772 + MMJJ_RS05435 0.19 -0.4
1,010,772 + MMJJ_RS05435 0.19 +0.3
1,010,773 - MMJJ_RS05435 0.19 -0.3
1,010,776 - MMJJ_RS05435 0.19 +0.1
1,010,781 - MMJJ_RS05435 0.20 -0.5
1,010,781 - MMJJ_RS05435 0.20 +0.5
1,010,781 - MMJJ_RS05435 0.20 -0.2
1,010,781 - MMJJ_RS05435 0.20 -0.4
1,010,782 + MMJJ_RS05435 0.20 -0.8
1,010,782 + MMJJ_RS05435 0.20 -0.3
1,010,799 - MMJJ_RS05435 0.21 +0.5
1,010,845 - MMJJ_RS05435 0.24 -0.7
1,010,850 + MMJJ_RS05435 0.24 +0.2
1,010,850 + MMJJ_RS05435 0.24 +0.7
1,010,850 + MMJJ_RS05435 0.24 -0.3
1,010,859 - MMJJ_RS05435 0.25 +0.5
1,010,866 - MMJJ_RS05435 0.25 -0.7
1,010,866 - MMJJ_RS05435 0.25 +0.1
1,010,866 - MMJJ_RS05435 0.25 -1.4
1,010,866 - MMJJ_RS05435 0.25 +0.2
1,010,866 - MMJJ_RS05435 0.25 -1.2
1,010,871 - MMJJ_RS05435 0.25 -0.2
1,010,872 + MMJJ_RS05435 0.25 -0.8
1,010,872 + MMJJ_RS05435 0.25 +0.3
1,010,872 + MMJJ_RS05435 0.25 +0.7
1,010,881 - MMJJ_RS05435 0.26 -0.3
1,010,907 - MMJJ_RS05435 0.28 -0.1
1,010,908 + MMJJ_RS05435 0.28 -0.8
1,010,929 - MMJJ_RS05435 0.29 -0.6
1,010,930 + MMJJ_RS05435 0.29 +0.1
1,010,951 - MMJJ_RS05435 0.30 +1.4
1,010,960 + MMJJ_RS05435 0.31 +1.3
1,010,977 - MMJJ_RS05435 0.32 -0.2
1,010,977 - MMJJ_RS05435 0.32 -0.0
1,010,987 + MMJJ_RS05435 0.33 +0.3
1,011,051 - +1.2
1,011,051 - MMJJ_RS05435 0.37 -0.4
1,011,068 - MMJJ_RS05435 0.38 -0.0
1,011,096 - MMJJ_RS05435 0.40 -0.3
1,011,099 - MMJJ_RS05435 0.40 +0.3
1,011,100 + MMJJ_RS05435 0.40 -0.1
1,011,101 - MMJJ_RS05435 0.40 +0.3
1,011,101 - MMJJ_RS05435 0.40 -0.1
1,011,102 + MMJJ_RS05435 0.40 -1.6
1,011,103 - MMJJ_RS05435 0.40 +0.3
1,011,104 + MMJJ_RS05435 0.40 -0.4
1,011,104 + MMJJ_RS05435 0.40 +0.6
1,011,104 + +0.5
1,011,104 + MMJJ_RS05435 0.40 -0.5
1,011,104 + MMJJ_RS05435 0.40 +0.1
1,011,132 - MMJJ_RS05435 0.42 +0.3
1,011,132 - MMJJ_RS05435 0.42 -0.8
1,011,132 - MMJJ_RS05435 0.42 -0.4
1,011,133 + MMJJ_RS05435 0.42 -1.3
1,011,175 + MMJJ_RS05435 0.45 -0.4
1,011,175 + MMJJ_RS05435 0.45 +0.0
1,011,229 + MMJJ_RS05435 0.48 -0.8
1,011,229 + MMJJ_RS05435 0.48 +0.2
1,011,232 - MMJJ_RS05435 0.48 +0.5
1,011,232 - MMJJ_RS05435 0.48 -0.0
1,011,232 - MMJJ_RS05435 0.48 +0.3
1,011,232 - MMJJ_RS05435 0.48 -1.4
1,011,233 + MMJJ_RS05435 0.48 -0.3
1,011,233 + MMJJ_RS05435 0.48 -0.1
1,011,233 + MMJJ_RS05435 0.48 -1.0
1,011,233 + MMJJ_RS05435 0.48 -0.0
1,011,233 + MMJJ_RS05435 0.48 +0.1
1,011,233 + MMJJ_RS05435 0.48 +0.3
1,011,233 + MMJJ_RS05435 0.48 +0.4
1,011,243 + MMJJ_RS05435 0.49 +0.0
1,011,243 + MMJJ_RS05435 0.49 +0.5
1,011,265 + MMJJ_RS05435 0.50 -0.3
1,011,299 + MMJJ_RS05435 0.52 -0.2
1,011,331 - MMJJ_RS05435 0.54 -0.6
1,011,331 - MMJJ_RS05435 0.54 -0.9
1,011,331 - MMJJ_RS05435 0.54 +0.6
1,011,331 - MMJJ_RS05435 0.54 +0.9
1,011,332 + MMJJ_RS05435 0.54 +0.1
1,011,332 + MMJJ_RS05435 0.54 +0.1
1,011,332 + MMJJ_RS05435 0.54 +0.7

Or see this region's nucleotide sequence