Experiment: Formate 100 mM hypophosphite
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05425 and MMJJ_RS05430 are separated by 380 nucleotides MMJJ_RS05430 and MMJJ_RS05435 are separated by 127 nucleotides
MMJJ_RS05425: MMJJ_RS05425 - geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase, at 1,008,105 to 1,008,875
_RS05425
MMJJ_RS05430: MMJJ_RS05430 - 3-dehydroquinate synthase II, at 1,009,256 to 1,010,341
_RS05430
MMJJ_RS05435: MMJJ_RS05435 - DUF2254 domain-containing protein, at 1,010,469 to 1,012,052
_RS05435
Position (kb)
1009
1010
1011 Strain fitness (log2 ratio)
-2
-1
0
1 at 1008.654 kb on - strand, within MMJJ_RS05425 at 1008.655 kb on + strand at 1008.705 kb on - strand, within MMJJ_RS05425 at 1008.776 kb on + strand at 1008.900 kb on - strand at 1008.941 kb on - strand at 1008.971 kb on + strand at 1008.991 kb on - strand at 1008.994 kb on - strand at 1008.995 kb on + strand at 1008.997 kb on - strand at 1008.999 kb on - strand at 1009.022 kb on - strand at 1009.022 kb on - strand at 1009.022 kb on - strand at 1009.023 kb on + strand at 1009.023 kb on + strand at 1009.028 kb on - strand at 1009.028 kb on - strand at 1009.028 kb on - strand at 1009.028 kb on - strand at 1009.029 kb on + strand at 1009.029 kb on + strand at 1009.030 kb on - strand at 1009.030 kb on - strand at 1009.030 kb on - strand at 1009.031 kb on + strand at 1009.045 kb on - strand at 1009.050 kb on + strand at 1009.050 kb on + strand at 1009.054 kb on + strand at 1009.072 kb on - strand at 1009.073 kb on + strand at 1009.077 kb on + strand at 1009.098 kb on - strand at 1009.099 kb on + strand at 1009.099 kb on + strand at 1009.121 kb on - strand at 1009.138 kb on - strand at 1009.140 kb on - strand at 1009.140 kb on - strand at 1009.140 kb on - strand at 1009.140 kb on - strand at 1009.141 kb on + strand at 1009.183 kb on + strand at 1009.219 kb on - strand at 1009.267 kb on - strand at 1010.401 kb on - strand at 1010.410 kb on - strand at 1010.414 kb on - strand at 1010.415 kb on + strand at 1010.420 kb on - strand at 1010.425 kb on + strand at 1010.425 kb on + strand at 1010.430 kb on - strand at 1010.431 kb on + strand at 1010.431 kb on + strand at 1010.431 kb on + strand at 1010.434 kb on - strand at 1010.435 kb on + strand at 1010.439 kb on - strand at 1010.439 kb on - strand at 1010.439 kb on - strand at 1010.439 kb on - strand at 1010.440 kb on + strand at 1010.440 kb on + strand at 1010.440 kb on + strand at 1010.443 kb on - strand at 1010.443 kb on - strand at 1010.444 kb on + strand at 1010.447 kb on - strand at 1010.448 kb on + strand at 1010.486 kb on - strand at 1010.511 kb on - strand at 1010.540 kb on + strand at 1010.545 kb on - strand at 1010.574 kb on - strand at 1010.578 kb on + strand at 1010.578 kb on + strand at 1010.623 kb on - strand at 1010.628 kb on - strand, within MMJJ_RS05435 at 1010.628 kb on - strand, within MMJJ_RS05435 at 1010.629 kb on + strand, within MMJJ_RS05435 at 1010.630 kb on - strand, within MMJJ_RS05435 at 1010.630 kb on - strand, within MMJJ_RS05435 at 1010.631 kb on + strand, within MMJJ_RS05435 at 1010.631 kb on + strand, within MMJJ_RS05435 at 1010.631 kb on + strand, within MMJJ_RS05435 at 1010.631 kb on + strand, within MMJJ_RS05435 at 1010.635 kb on - strand, within MMJJ_RS05435 at 1010.711 kb on + strand, within MMJJ_RS05435 at 1010.722 kb on + strand, within MMJJ_RS05435 at 1010.746 kb on - strand, within MMJJ_RS05435 at 1010.751 kb on + strand, within MMJJ_RS05435 at 1010.772 kb on + strand, within MMJJ_RS05435 at 1010.772 kb on + strand, within MMJJ_RS05435 at 1010.773 kb on - strand, within MMJJ_RS05435 at 1010.776 kb on - strand, within MMJJ_RS05435 at 1010.781 kb on - strand, within MMJJ_RS05435 at 1010.781 kb on - strand, within MMJJ_RS05435 at 1010.781 kb on - strand, within MMJJ_RS05435 at 1010.781 kb on - strand, within MMJJ_RS05435 at 1010.782 kb on + strand, within MMJJ_RS05435 at 1010.782 kb on + strand, within MMJJ_RS05435 at 1010.799 kb on - strand, within MMJJ_RS05435 at 1010.845 kb on - strand, within MMJJ_RS05435 at 1010.850 kb on + strand, within MMJJ_RS05435 at 1010.850 kb on + strand, within MMJJ_RS05435 at 1010.850 kb on + strand, within MMJJ_RS05435 at 1010.859 kb on - strand, within MMJJ_RS05435 at 1010.866 kb on - strand, within MMJJ_RS05435 at 1010.866 kb on - strand, within MMJJ_RS05435 at 1010.866 kb on - strand, within MMJJ_RS05435 at 1010.866 kb on - strand, within MMJJ_RS05435 at 1010.866 kb on - strand, within MMJJ_RS05435 at 1010.871 kb on - strand, within MMJJ_RS05435 at 1010.872 kb on + strand, within MMJJ_RS05435 at 1010.872 kb on + strand, within MMJJ_RS05435 at 1010.872 kb on + strand, within MMJJ_RS05435 at 1010.881 kb on - strand, within MMJJ_RS05435 at 1010.907 kb on - strand, within MMJJ_RS05435 at 1010.908 kb on + strand, within MMJJ_RS05435 at 1010.929 kb on - strand, within MMJJ_RS05435 at 1010.930 kb on + strand, within MMJJ_RS05435 at 1010.951 kb on - strand, within MMJJ_RS05435 at 1010.960 kb on + strand, within MMJJ_RS05435 at 1010.977 kb on - strand, within MMJJ_RS05435 at 1010.977 kb on - strand, within MMJJ_RS05435 at 1010.987 kb on + strand, within MMJJ_RS05435 at 1011.051 kb on - strand at 1011.051 kb on - strand, within MMJJ_RS05435 at 1011.068 kb on - strand, within MMJJ_RS05435 at 1011.096 kb on - strand, within MMJJ_RS05435 at 1011.099 kb on - strand, within MMJJ_RS05435 at 1011.100 kb on + strand, within MMJJ_RS05435 at 1011.101 kb on - strand, within MMJJ_RS05435 at 1011.101 kb on - strand, within MMJJ_RS05435 at 1011.102 kb on + strand, within MMJJ_RS05435 at 1011.103 kb on - strand, within MMJJ_RS05435 at 1011.104 kb on + strand, within MMJJ_RS05435 at 1011.104 kb on + strand, within MMJJ_RS05435 at 1011.104 kb on + strand at 1011.104 kb on + strand, within MMJJ_RS05435 at 1011.104 kb on + strand, within MMJJ_RS05435 at 1011.132 kb on - strand, within MMJJ_RS05435 at 1011.132 kb on - strand, within MMJJ_RS05435 at 1011.132 kb on - strand, within MMJJ_RS05435 at 1011.133 kb on + strand, within MMJJ_RS05435 at 1011.175 kb on + strand, within MMJJ_RS05435 at 1011.175 kb on + strand, within MMJJ_RS05435 at 1011.229 kb on + strand, within MMJJ_RS05435 at 1011.229 kb on + strand, within MMJJ_RS05435 at 1011.232 kb on - strand, within MMJJ_RS05435 at 1011.232 kb on - strand, within MMJJ_RS05435 at 1011.232 kb on - strand, within MMJJ_RS05435 at 1011.232 kb on - strand, within MMJJ_RS05435 at 1011.233 kb on + strand, within MMJJ_RS05435 at 1011.233 kb on + strand, within MMJJ_RS05435 at 1011.233 kb on + strand, within MMJJ_RS05435 at 1011.233 kb on + strand, within MMJJ_RS05435 at 1011.233 kb on + strand, within MMJJ_RS05435 at 1011.233 kb on + strand, within MMJJ_RS05435 at 1011.233 kb on + strand, within MMJJ_RS05435 at 1011.243 kb on + strand, within MMJJ_RS05435 at 1011.243 kb on + strand, within MMJJ_RS05435 at 1011.265 kb on + strand, within MMJJ_RS05435 at 1011.299 kb on + strand, within MMJJ_RS05435 at 1011.331 kb on - strand, within MMJJ_RS05435 at 1011.331 kb on - strand, within MMJJ_RS05435 at 1011.331 kb on - strand, within MMJJ_RS05435 at 1011.331 kb on - strand, within MMJJ_RS05435 at 1011.332 kb on + strand, within MMJJ_RS05435 at 1011.332 kb on + strand, within MMJJ_RS05435 at 1011.332 kb on + strand, within MMJJ_RS05435
Per-strain Table
Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite remove 1,008,654 - MMJJ_RS05425 0.71 -1.9 1,008,655 + -0.8 1,008,705 - MMJJ_RS05425 0.78 -1.3 1,008,776 + -0.6 1,008,900 - +0.5 1,008,941 - +0.9 1,008,971 + +0.3 1,008,991 - -0.3 1,008,994 - -0.0 1,008,995 + -0.1 1,008,997 - -0.4 1,008,999 - -0.4 1,009,022 - -0.3 1,009,022 - +0.5 1,009,022 - +1.0 1,009,023 + +0.1 1,009,023 + +0.0 1,009,028 - -0.1 1,009,028 - -0.5 1,009,028 - -0.3 1,009,028 - -0.1 1,009,029 + -0.3 1,009,029 + +0.1 1,009,030 - -0.8 1,009,030 - +0.1 1,009,030 - +0.3 1,009,031 + +0.1 1,009,045 - -0.5 1,009,050 + +0.2 1,009,050 + -0.2 1,009,054 + +0.2 1,009,072 - -0.3 1,009,073 + -0.2 1,009,077 + +0.4 1,009,098 - -0.3 1,009,099 + +0.3 1,009,099 + -0.2 1,009,121 - -0.2 1,009,138 - -0.7 1,009,140 - +0.8 1,009,140 - -0.1 1,009,140 - +0.8 1,009,140 - +0.1 1,009,141 + +0.5 1,009,183 + -0.1 1,009,219 - -0.4 1,009,267 - +1.5 1,010,401 - +1.5 1,010,410 - -1.6 1,010,414 - +1.2 1,010,415 + -0.7 1,010,420 - +0.4 1,010,425 + -0.4 1,010,425 + -1.4 1,010,430 - +0.3 1,010,431 + -0.2 1,010,431 + -0.5 1,010,431 + +0.3 1,010,434 - -0.2 1,010,435 + -0.2 1,010,439 - +0.5 1,010,439 - +0.3 1,010,439 - -1.0 1,010,439 - +0.1 1,010,440 + +0.3 1,010,440 + -0.3 1,010,440 + -0.8 1,010,443 - -0.5 1,010,443 - -0.4 1,010,444 + +0.7 1,010,447 - +0.3 1,010,448 + +0.1 1,010,486 - +0.2 1,010,511 - -0.7 1,010,540 + +0.7 1,010,545 - +0.1 1,010,574 - +0.0 1,010,578 + +0.4 1,010,578 + -0.3 1,010,623 - +1.1 1,010,628 - MMJJ_RS05435 0.10 +0.1 1,010,628 - MMJJ_RS05435 0.10 +0.5 1,010,629 + MMJJ_RS05435 0.10 +0.1 1,010,630 - MMJJ_RS05435 0.10 -0.3 1,010,630 - MMJJ_RS05435 0.10 -0.2 1,010,631 + MMJJ_RS05435 0.10 +1.3 1,010,631 + MMJJ_RS05435 0.10 +0.6 1,010,631 + MMJJ_RS05435 0.10 -0.2 1,010,631 + MMJJ_RS05435 0.10 +0.2 1,010,635 - MMJJ_RS05435 0.10 +1.1 1,010,711 + MMJJ_RS05435 0.15 -0.6 1,010,722 + MMJJ_RS05435 0.16 +1.0 1,010,746 - MMJJ_RS05435 0.17 -0.8 1,010,751 + MMJJ_RS05435 0.18 -0.3 1,010,772 + MMJJ_RS05435 0.19 -0.4 1,010,772 + MMJJ_RS05435 0.19 +0.3 1,010,773 - MMJJ_RS05435 0.19 -0.3 1,010,776 - MMJJ_RS05435 0.19 +0.1 1,010,781 - MMJJ_RS05435 0.20 -0.5 1,010,781 - MMJJ_RS05435 0.20 +0.5 1,010,781 - MMJJ_RS05435 0.20 -0.2 1,010,781 - MMJJ_RS05435 0.20 -0.4 1,010,782 + MMJJ_RS05435 0.20 -0.8 1,010,782 + MMJJ_RS05435 0.20 -0.3 1,010,799 - MMJJ_RS05435 0.21 +0.5 1,010,845 - MMJJ_RS05435 0.24 -0.7 1,010,850 + MMJJ_RS05435 0.24 +0.2 1,010,850 + MMJJ_RS05435 0.24 +0.7 1,010,850 + MMJJ_RS05435 0.24 -0.3 1,010,859 - MMJJ_RS05435 0.25 +0.5 1,010,866 - MMJJ_RS05435 0.25 -0.7 1,010,866 - MMJJ_RS05435 0.25 +0.1 1,010,866 - MMJJ_RS05435 0.25 -1.4 1,010,866 - MMJJ_RS05435 0.25 +0.2 1,010,866 - MMJJ_RS05435 0.25 -1.2 1,010,871 - MMJJ_RS05435 0.25 -0.2 1,010,872 + MMJJ_RS05435 0.25 -0.8 1,010,872 + MMJJ_RS05435 0.25 +0.3 1,010,872 + MMJJ_RS05435 0.25 +0.7 1,010,881 - MMJJ_RS05435 0.26 -0.3 1,010,907 - MMJJ_RS05435 0.28 -0.1 1,010,908 + MMJJ_RS05435 0.28 -0.8 1,010,929 - MMJJ_RS05435 0.29 -0.6 1,010,930 + MMJJ_RS05435 0.29 +0.1 1,010,951 - MMJJ_RS05435 0.30 +1.4 1,010,960 + MMJJ_RS05435 0.31 +1.3 1,010,977 - MMJJ_RS05435 0.32 -0.2 1,010,977 - MMJJ_RS05435 0.32 -0.0 1,010,987 + MMJJ_RS05435 0.33 +0.3 1,011,051 - +1.2 1,011,051 - MMJJ_RS05435 0.37 -0.4 1,011,068 - MMJJ_RS05435 0.38 -0.0 1,011,096 - MMJJ_RS05435 0.40 -0.3 1,011,099 - MMJJ_RS05435 0.40 +0.3 1,011,100 + MMJJ_RS05435 0.40 -0.1 1,011,101 - MMJJ_RS05435 0.40 +0.3 1,011,101 - MMJJ_RS05435 0.40 -0.1 1,011,102 + MMJJ_RS05435 0.40 -1.6 1,011,103 - MMJJ_RS05435 0.40 +0.3 1,011,104 + MMJJ_RS05435 0.40 -0.4 1,011,104 + MMJJ_RS05435 0.40 +0.6 1,011,104 + +0.5 1,011,104 + MMJJ_RS05435 0.40 -0.5 1,011,104 + MMJJ_RS05435 0.40 +0.1 1,011,132 - MMJJ_RS05435 0.42 +0.3 1,011,132 - MMJJ_RS05435 0.42 -0.8 1,011,132 - MMJJ_RS05435 0.42 -0.4 1,011,133 + MMJJ_RS05435 0.42 -1.3 1,011,175 + MMJJ_RS05435 0.45 -0.4 1,011,175 + MMJJ_RS05435 0.45 +0.0 1,011,229 + MMJJ_RS05435 0.48 -0.8 1,011,229 + MMJJ_RS05435 0.48 +0.2 1,011,232 - MMJJ_RS05435 0.48 +0.5 1,011,232 - MMJJ_RS05435 0.48 -0.0 1,011,232 - MMJJ_RS05435 0.48 +0.3 1,011,232 - MMJJ_RS05435 0.48 -1.4 1,011,233 + MMJJ_RS05435 0.48 -0.3 1,011,233 + MMJJ_RS05435 0.48 -0.1 1,011,233 + MMJJ_RS05435 0.48 -1.0 1,011,233 + MMJJ_RS05435 0.48 -0.0 1,011,233 + MMJJ_RS05435 0.48 +0.1 1,011,233 + MMJJ_RS05435 0.48 +0.3 1,011,233 + MMJJ_RS05435 0.48 +0.4 1,011,243 + MMJJ_RS05435 0.49 +0.0 1,011,243 + MMJJ_RS05435 0.49 +0.5 1,011,265 + MMJJ_RS05435 0.50 -0.3 1,011,299 + MMJJ_RS05435 0.52 -0.2 1,011,331 - MMJJ_RS05435 0.54 -0.6 1,011,331 - MMJJ_RS05435 0.54 -0.9 1,011,331 - MMJJ_RS05435 0.54 +0.6 1,011,331 - MMJJ_RS05435 0.54 +0.9 1,011,332 + MMJJ_RS05435 0.54 +0.1 1,011,332 + MMJJ_RS05435 0.54 +0.1 1,011,332 + MMJJ_RS05435 0.54 +0.7
Or see this region's nucleotide sequence