Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02190

Experiment: Formate 100 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02180 and MMJJ_RS02185 are separated by 61 nucleotidesMMJJ_RS02185 and MMJJ_RS02190 are separated by 216 nucleotidesMMJJ_RS02190 and MMJJ_RS02195 are separated by 26 nucleotides MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539 _RS02180 MMJJ_RS02185: MMJJ_RS02185 - TIGR00296 family protein, at 414,601 to 415,212 _RS02185 MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279 _RS02190 MMJJ_RS02195: MMJJ_RS02195 - AmmeMemoRadiSam system radical SAM enzyme, at 417,306 to 418,316 _RS02195 Position (kb) 415 416 417 418Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 414.450 kb on - strandat 414.453 kb on - strandat 414.531 kb on - strandat 414.531 kb on - strandat 414.532 kb on + strandat 414.532 kb on + strandat 414.534 kb on + strandat 414.563 kb on + strandat 414.563 kb on + strandat 414.569 kb on + strandat 414.569 kb on + strandat 414.573 kb on - strandat 414.574 kb on + strandat 414.612 kb on - strandat 414.614 kb on - strandat 414.614 kb on - strandat 414.614 kb on - strandat 414.695 kb on - strand, within MMJJ_RS02185at 414.768 kb on - strandat 414.768 kb on - strand, within MMJJ_RS02185at 414.768 kb on - strand, within MMJJ_RS02185at 414.770 kb on - strand, within MMJJ_RS02185at 414.770 kb on - strand, within MMJJ_RS02185at 414.778 kb on + strand, within MMJJ_RS02185at 414.917 kb on + strand, within MMJJ_RS02185at 414.917 kb on + strand, within MMJJ_RS02185at 414.924 kb on - strand, within MMJJ_RS02185at 414.925 kb on + strand, within MMJJ_RS02185at 414.960 kb on - strand, within MMJJ_RS02185at 414.982 kb on - strand, within MMJJ_RS02185at 414.997 kb on - strand, within MMJJ_RS02185at 414.998 kb on + strand, within MMJJ_RS02185at 414.998 kb on + strand, within MMJJ_RS02185at 415.038 kb on - strand, within MMJJ_RS02185at 415.068 kb on - strand, within MMJJ_RS02185at 415.084 kb on - strand, within MMJJ_RS02185at 415.116 kb on + strand, within MMJJ_RS02185at 415.145 kb on + strand, within MMJJ_RS02185at 415.145 kb on + strand, within MMJJ_RS02185at 415.149 kb on + strand, within MMJJ_RS02185at 415.172 kb on - strandat 415.204 kb on - strandat 415.228 kb on + strandat 415.228 kb on + strandat 415.229 kb on - strandat 415.230 kb on + strandat 415.235 kb on + strandat 415.246 kb on - strandat 415.255 kb on - strandat 415.261 kb on + strandat 415.314 kb on - strandat 415.315 kb on + strandat 415.315 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.361 kb on - strandat 415.375 kb on + strandat 415.378 kb on - strandat 415.378 kb on - strandat 415.379 kb on + strandat 415.439 kb on - strandat 415.513 kb on - strandat 415.513 kb on - strandat 415.559 kb on - strandat 415.572 kb on - strandat 415.609 kb on + strandat 415.612 kb on - strandat 415.845 kb on - strand, within MMJJ_RS02190at 415.846 kb on + strand, within MMJJ_RS02190at 415.863 kb on - strand, within MMJJ_RS02190at 415.865 kb on - strand, within MMJJ_RS02190at 415.865 kb on - strand, within MMJJ_RS02190at 415.892 kb on + strand, within MMJJ_RS02190at 415.905 kb on - strand, within MMJJ_RS02190at 415.915 kb on - strand, within MMJJ_RS02190at 415.915 kb on - strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.917 kb on - strand, within MMJJ_RS02190at 415.917 kb on - strand, within MMJJ_RS02190at 415.918 kb on + strand, within MMJJ_RS02190at 415.918 kb on + strand, within MMJJ_RS02190at 415.921 kb on + strand, within MMJJ_RS02190at 415.939 kb on - strand, within MMJJ_RS02190at 416.012 kb on + strand, within MMJJ_RS02190at 416.044 kb on - strand, within MMJJ_RS02190at 416.079 kb on - strand, within MMJJ_RS02190at 416.082 kb on - strand, within MMJJ_RS02190at 416.158 kb on - strand, within MMJJ_RS02190at 416.159 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.178 kb on + strand, within MMJJ_RS02190at 416.178 kb on + strand, within MMJJ_RS02190at 416.182 kb on + strand, within MMJJ_RS02190at 416.265 kb on + strand, within MMJJ_RS02190at 416.291 kb on - strand, within MMJJ_RS02190at 416.291 kb on - strand, within MMJJ_RS02190at 416.291 kb on - strand, within MMJJ_RS02190at 416.292 kb on + strand, within MMJJ_RS02190at 416.292 kb on + strand, within MMJJ_RS02190at 416.292 kb on + strand, within MMJJ_RS02190at 416.296 kb on + strand, within MMJJ_RS02190at 416.296 kb on + strand, within MMJJ_RS02190at 416.296 kb on + strand, within MMJJ_RS02190at 416.296 kb on + strand, within MMJJ_RS02190at 416.298 kb on - strand, within MMJJ_RS02190at 416.300 kb on - strand, within MMJJ_RS02190at 416.438 kb on + strand, within MMJJ_RS02190at 416.528 kb on + strand, within MMJJ_RS02190at 416.528 kb on + strand, within MMJJ_RS02190at 416.536 kb on - strand, within MMJJ_RS02190at 416.537 kb on + strand, within MMJJ_RS02190at 416.537 kb on + strand, within MMJJ_RS02190at 416.572 kb on - strand, within MMJJ_RS02190at 416.583 kb on - strand, within MMJJ_RS02190at 416.594 kb on + strand, within MMJJ_RS02190at 416.629 kb on - strand, within MMJJ_RS02190at 416.635 kb on + strand, within MMJJ_RS02190at 416.635 kb on + strand, within MMJJ_RS02190at 416.635 kb on + strand, within MMJJ_RS02190at 416.652 kb on + strand, within MMJJ_RS02190at 416.655 kb on - strand, within MMJJ_RS02190at 416.656 kb on + strand, within MMJJ_RS02190at 416.659 kb on - strand, within MMJJ_RS02190at 416.659 kb on - strand, within MMJJ_RS02190at 416.701 kb on - strand, within MMJJ_RS02190at 416.726 kb on + strand, within MMJJ_RS02190at 416.805 kb on - strand, within MMJJ_RS02190at 416.826 kb on - strand, within MMJJ_RS02190at 416.826 kb on - strand, within MMJJ_RS02190at 416.827 kb on + strand, within MMJJ_RS02190at 416.827 kb on + strand, within MMJJ_RS02190at 416.827 kb on + strand, within MMJJ_RS02190at 416.843 kb on + strand, within MMJJ_RS02190at 416.843 kb on + strand, within MMJJ_RS02190at 416.935 kb on + strand, within MMJJ_RS02190at 416.939 kb on + strand, within MMJJ_RS02190at 417.081 kb on + strand, within MMJJ_RS02190at 417.155 kb on + strandat 417.258 kb on - strandat 417.268 kb on - strandat 417.272 kb on - strandat 417.282 kb on - strandat 417.283 kb on + strandat 417.292 kb on - strandat 417.308 kb on + strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.366 kb on + strandat 417.376 kb on + strandat 417.419 kb on - strand, within MMJJ_RS02195at 417.434 kb on + strand, within MMJJ_RS02195at 417.474 kb on - strand, within MMJJ_RS02195at 417.474 kb on - strand, within MMJJ_RS02195at 417.474 kb on - strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.484 kb on + strand, within MMJJ_RS02195at 417.529 kb on + strand, within MMJJ_RS02195at 417.537 kb on + strand, within MMJJ_RS02195at 417.557 kb on - strand, within MMJJ_RS02195at 417.557 kb on - strand, within MMJJ_RS02195at 417.557 kb on - strand, within MMJJ_RS02195at 417.559 kb on - strand, within MMJJ_RS02195at 417.560 kb on + strand, within MMJJ_RS02195at 417.658 kb on - strand, within MMJJ_RS02195at 417.739 kb on + strand, within MMJJ_RS02195at 417.754 kb on + strand, within MMJJ_RS02195at 417.783 kb on - strand, within MMJJ_RS02195at 417.785 kb on - strand, within MMJJ_RS02195at 417.786 kb on + strand, within MMJJ_RS02195at 417.839 kb on + strand, within MMJJ_RS02195at 417.839 kb on + strand, within MMJJ_RS02195at 417.855 kb on - strand, within MMJJ_RS02195at 417.856 kb on + strand, within MMJJ_RS02195at 417.916 kb on + strand, within MMJJ_RS02195at 417.916 kb on + strand, within MMJJ_RS02195at 417.930 kb on + strand, within MMJJ_RS02195at 417.931 kb on - strand, within MMJJ_RS02195at 417.932 kb on + strand, within MMJJ_RS02195at 417.936 kb on + strand, within MMJJ_RS02195at 418.055 kb on - strand, within MMJJ_RS02195at 418.067 kb on - strand, within MMJJ_RS02195at 418.068 kb on + strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.120 kb on + strand, within MMJJ_RS02195at 418.215 kb on - strand, within MMJJ_RS02195

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite
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414,450 - -0.0
414,453 - -0.8
414,531 - +0.5
414,531 - +0.8
414,532 + -0.7
414,532 + -0.1
414,534 + +0.1
414,563 + -0.7
414,563 + +0.3
414,569 + +0.5
414,569 + -0.0
414,573 - -0.5
414,574 + -0.7
414,612 - -0.5
414,614 - -0.5
414,614 - -1.9
414,614 - -0.3
414,695 - MMJJ_RS02185 0.15 -0.3
414,768 - +0.3
414,768 - MMJJ_RS02185 0.27 +0.0
414,768 - MMJJ_RS02185 0.27 +0.4
414,770 - MMJJ_RS02185 0.28 -0.5
414,770 - MMJJ_RS02185 0.28 +0.6
414,778 + MMJJ_RS02185 0.29 +0.1
414,917 + MMJJ_RS02185 0.52 -0.4
414,917 + MMJJ_RS02185 0.52 +0.1
414,924 - MMJJ_RS02185 0.53 -0.1
414,925 + MMJJ_RS02185 0.53 +0.2
414,960 - MMJJ_RS02185 0.59 +0.1
414,982 - MMJJ_RS02185 0.62 -0.0
414,997 - MMJJ_RS02185 0.65 +0.4
414,998 + MMJJ_RS02185 0.65 +0.7
414,998 + MMJJ_RS02185 0.65 -0.5
415,038 - MMJJ_RS02185 0.71 +0.8
415,068 - MMJJ_RS02185 0.76 -0.7
415,084 - MMJJ_RS02185 0.79 +0.3
415,116 + MMJJ_RS02185 0.84 +0.1
415,145 + MMJJ_RS02185 0.89 -0.3
415,145 + MMJJ_RS02185 0.89 -0.2
415,149 + MMJJ_RS02185 0.90 -0.2
415,172 - -1.1
415,204 - +0.6
415,228 + -0.0
415,228 + -0.2
415,229 - +0.8
415,230 + +0.0
415,235 + +0.3
415,246 - -0.2
415,255 - +0.5
415,261 + -0.6
415,314 - +0.3
415,315 + -0.4
415,315 + +0.1
415,347 + +0.0
415,347 + -0.2
415,347 + -0.3
415,347 + +0.8
415,361 - +0.3
415,375 + -0.1
415,378 - +0.7
415,378 - -0.4
415,379 + +0.2
415,439 - -0.2
415,513 - -1.5
415,513 - -2.3
415,559 - -2.2
415,572 - -2.3
415,609 + -2.1
415,612 - -2.1
415,845 - MMJJ_RS02190 0.22 -0.7
415,846 + MMJJ_RS02190 0.23 -3.4
415,863 - MMJJ_RS02190 0.23 -1.5
415,865 - MMJJ_RS02190 0.24 -2.7
415,865 - MMJJ_RS02190 0.24 -2.1
415,892 + MMJJ_RS02190 0.25 -1.6
415,905 - MMJJ_RS02190 0.26 -1.5
415,915 - MMJJ_RS02190 0.26 -4.2
415,915 - MMJJ_RS02190 0.26 -3.6
415,916 + MMJJ_RS02190 0.26 -2.1
415,916 + MMJJ_RS02190 0.26 -3.9
415,916 + MMJJ_RS02190 0.26 -1.9
415,917 - MMJJ_RS02190 0.26 -2.0
415,917 - MMJJ_RS02190 0.26 -3.6
415,918 + MMJJ_RS02190 0.26 -2.1
415,918 + MMJJ_RS02190 0.26 -0.5
415,921 + MMJJ_RS02190 0.27 -3.4
415,939 - MMJJ_RS02190 0.28 -2.7
416,012 + MMJJ_RS02190 0.31 -4.0
416,044 - MMJJ_RS02190 0.33 -2.2
416,079 - MMJJ_RS02190 0.35 -2.7
416,082 - MMJJ_RS02190 0.35 -3.3
416,158 - MMJJ_RS02190 0.39 -2.9
416,159 + MMJJ_RS02190 0.39 -2.4
416,161 + MMJJ_RS02190 0.40 -2.3
416,161 + MMJJ_RS02190 0.40 -2.0
416,161 + MMJJ_RS02190 0.40 -1.5
416,177 - MMJJ_RS02190 0.40 -2.4
416,177 - MMJJ_RS02190 0.40 -3.3
416,177 - MMJJ_RS02190 0.40 -3.3
416,178 + MMJJ_RS02190 0.40 -2.3
416,178 + MMJJ_RS02190 0.40 -2.1
416,182 + MMJJ_RS02190 0.41 -2.7
416,265 + MMJJ_RS02190 0.45 -3.7
416,291 - MMJJ_RS02190 0.47 -1.9
416,291 - MMJJ_RS02190 0.47 -2.4
416,291 - MMJJ_RS02190 0.47 -2.1
416,292 + MMJJ_RS02190 0.47 -2.8
416,292 + MMJJ_RS02190 0.47 -2.2
416,292 + MMJJ_RS02190 0.47 -1.2
416,296 + MMJJ_RS02190 0.47 -3.1
416,296 + MMJJ_RS02190 0.47 -1.6
416,296 + MMJJ_RS02190 0.47 -1.5
416,296 + MMJJ_RS02190 0.47 -1.3
416,298 - MMJJ_RS02190 0.47 -3.4
416,300 - MMJJ_RS02190 0.47 -2.2
416,438 + MMJJ_RS02190 0.55 -2.6
416,528 + MMJJ_RS02190 0.59 -1.1
416,528 + MMJJ_RS02190 0.59 -2.6
416,536 - MMJJ_RS02190 0.60 -1.7
416,537 + MMJJ_RS02190 0.60 -1.9
416,537 + MMJJ_RS02190 0.60 -2.8
416,572 - MMJJ_RS02190 0.62 -2.3
416,583 - MMJJ_RS02190 0.62 -3.2
416,594 + MMJJ_RS02190 0.63 -2.5
416,629 - MMJJ_RS02190 0.65 -1.8
416,635 + MMJJ_RS02190 0.65 -1.2
416,635 + MMJJ_RS02190 0.65 -2.5
416,635 + MMJJ_RS02190 0.65 -2.1
416,652 + MMJJ_RS02190 0.66 -2.1
416,655 - MMJJ_RS02190 0.66 -2.4
416,656 + MMJJ_RS02190 0.66 -2.8
416,659 - MMJJ_RS02190 0.66 -2.6
416,659 - MMJJ_RS02190 0.66 -2.8
416,701 - MMJJ_RS02190 0.69 -1.5
416,726 + MMJJ_RS02190 0.70 -2.2
416,805 - MMJJ_RS02190 0.74 -2.5
416,826 - MMJJ_RS02190 0.75 -2.5
416,826 - MMJJ_RS02190 0.75 -0.8
416,827 + MMJJ_RS02190 0.76 -2.7
416,827 + MMJJ_RS02190 0.76 -3.1
416,827 + MMJJ_RS02190 0.76 -3.3
416,843 + MMJJ_RS02190 0.76 -2.0
416,843 + MMJJ_RS02190 0.76 -1.8
416,935 + MMJJ_RS02190 0.81 -1.6
416,939 + MMJJ_RS02190 0.82 -2.0
417,081 + MMJJ_RS02190 0.89 -1.5
417,155 + -3.0
417,258 - -4.0
417,268 - -2.0
417,272 - -2.5
417,282 - -2.6
417,283 + -2.2
417,292 - -2.2
417,308 + -2.1
417,312 - -1.5
417,312 - +0.0
417,312 - -1.4
417,312 - -1.7
417,312 - -1.3
417,313 + -0.6
417,313 + -1.9
417,313 + -1.9
417,313 + -2.5
417,313 + -1.9
417,366 + -3.7
417,376 + -1.3
417,419 - MMJJ_RS02195 0.11 -0.0
417,434 + MMJJ_RS02195 0.13 -1.8
417,474 - MMJJ_RS02195 0.17 -1.4
417,474 - MMJJ_RS02195 0.17 -1.8
417,474 - MMJJ_RS02195 0.17 -1.0
417,475 + MMJJ_RS02195 0.17 -3.7
417,475 + MMJJ_RS02195 0.17 -2.5
417,475 + MMJJ_RS02195 0.17 -2.4
417,475 + MMJJ_RS02195 0.17 -1.9
417,475 + MMJJ_RS02195 0.17 -3.2
417,475 + MMJJ_RS02195 0.17 -2.0
417,484 + MMJJ_RS02195 0.18 -3.5
417,529 + MMJJ_RS02195 0.22 -3.4
417,537 + MMJJ_RS02195 0.23 -3.3
417,557 - MMJJ_RS02195 0.25 -0.5
417,557 - MMJJ_RS02195 0.25 -1.4
417,557 - MMJJ_RS02195 0.25 -2.2
417,559 - MMJJ_RS02195 0.25 -1.8
417,560 + MMJJ_RS02195 0.25 -2.0
417,658 - MMJJ_RS02195 0.35 -1.7
417,739 + MMJJ_RS02195 0.43 -2.3
417,754 + MMJJ_RS02195 0.44 -3.7
417,783 - MMJJ_RS02195 0.47 -2.0
417,785 - MMJJ_RS02195 0.47 -0.7
417,786 + MMJJ_RS02195 0.47 -2.1
417,839 + MMJJ_RS02195 0.53 -2.7
417,839 + MMJJ_RS02195 0.53 -3.5
417,855 - MMJJ_RS02195 0.54 -2.3
417,856 + MMJJ_RS02195 0.54 -2.8
417,916 + MMJJ_RS02195 0.60 -0.7
417,916 + MMJJ_RS02195 0.60 -2.4
417,930 + MMJJ_RS02195 0.62 -1.1
417,931 - MMJJ_RS02195 0.62 -3.4
417,932 + MMJJ_RS02195 0.62 -2.6
417,936 + MMJJ_RS02195 0.62 -2.5
418,055 - MMJJ_RS02195 0.74 -2.2
418,067 - MMJJ_RS02195 0.75 -1.6
418,068 + MMJJ_RS02195 0.75 -2.8
418,119 - MMJJ_RS02195 0.80 -2.7
418,119 - MMJJ_RS02195 0.80 -2.4
418,119 - MMJJ_RS02195 0.80 -2.0
418,119 - MMJJ_RS02195 0.80 -0.8
418,119 - MMJJ_RS02195 0.80 -1.8
418,120 + MMJJ_RS02195 0.81 -3.2
418,215 - MMJJ_RS02195 0.90 -1.7

Or see this region's nucleotide sequence