Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00660

Experiment: Formate 100 mM hypophosphite

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate 100 mM hypophosphite
127,141	-		MMJJ_RS00650	0.69	+0.1
127,155	-		MMJJ_RS00650	0.70	-0.2
127,155	-		MMJJ_RS00650	0.70	-0.6
127,156	+		MMJJ_RS00650	0.70	-0.3
127,169	+		MMJJ_RS00650	0.71	+0.1
127,215	+		MMJJ_RS00650	0.75	-1.0
127,215	+		MMJJ_RS00650	0.75	-0.4
127,247	-		MMJJ_RS00650	0.78	-0.1
127,248	+		MMJJ_RS00650	0.78	-0.9
127,248	+		MMJJ_RS00650	0.78	+0.1
127,248	+		MMJJ_RS00650	0.78	+0.1
127,248	+		MMJJ_RS00650	0.78	+0.4
127,254	+		MMJJ_RS00650	0.79	-0.8
127,406	-				-0.1
127,433	-				+0.0
127,434	+				-1.2
127,459	-				-1.1
127,478	+				+0.1
127,533	-				-0.0
127,534	+				+0.3
127,534	+				-0.3
127,534	+				+0.3
127,594	-		MMJJ_RS00655	0.18	-0.6
127,681	-		MMJJ_RS00655	0.36	+0.5
127,789	-		MMJJ_RS00655	0.58	-0.2
127,789	-		MMJJ_RS00655	0.58	-0.1
127,789	-		MMJJ_RS00655	0.58	+0.3
127,802	+		MMJJ_RS00655	0.61	-0.0
127,860	-		MMJJ_RS00655	0.73	+0.2
127,860	-		MMJJ_RS00655	0.73	-0.5
127,861	+		MMJJ_RS00655	0.74	-0.5
127,864	-		MMJJ_RS00655	0.74	+0.5
127,864	-		MMJJ_RS00655	0.74	+0.2
127,864	-		MMJJ_RS00655	0.74	-0.4
127,896	-		MMJJ_RS00655	0.81	+0.7
127,896	-		MMJJ_RS00655	0.81	+0.8
127,900	-		MMJJ_RS00655	0.82	-0.1
127,900	-		MMJJ_RS00655	0.82	-0.1
127,900	-		MMJJ_RS00655	0.82	-0.5
127,901	+		MMJJ_RS00655	0.82	-0.1
127,914	-		MMJJ_RS00655	0.85	-0.2
127,915	+		MMJJ_RS00655	0.85	+0.2
127,955	-				-0.1
128,001	-				+0.1
128,008	+				-0.1
128,011	+				-0.2
128,012	-				+0.2
128,012	-				-0.1
128,012	-				+0.0
128,012	-				+0.1
128,013	+				-1.2
128,018	+				+0.0
128,032	-				+0.1
128,032	-				+0.5
128,037	+				-0.2
128,069	+				+0.4
128,070	-				-0.2
128,070	-				+2.4
128,070	-				+0.0
128,070	-				+0.9
128,070	-				+0.3
128,071	+				-0.8
128,071	+				+0.2
128,071	+				+0.1
128,071	+				+0.5
128,120	+				-0.7
128,135	-				+1.7
128,136	+				+0.5
128,184	-				-2.0
128,191	+				-1.2
128,213	-				-1.8
128,217	-		MMJJ_RS00660	0.10	-2.0
128,217	-		MMJJ_RS00660	0.10	-1.1
128,218	+		MMJJ_RS00660	0.10	-1.4
128,253	+		MMJJ_RS00660	0.14	-1.9
128,259	-		MMJJ_RS00660	0.15	-0.5
128,277	+		MMJJ_RS00660	0.17	-2.2
128,317	-		MMJJ_RS00660	0.22	-1.0
128,317	-		MMJJ_RS00660	0.22	-1.6
128,319	-		MMJJ_RS00660	0.22	-1.1
128,319	-		MMJJ_RS00660	0.22	-1.7
128,319	-		MMJJ_RS00660	0.22	-1.6
128,320	+		MMJJ_RS00660	0.23	-1.1
128,321	-		MMJJ_RS00660	0.23	-0.5
128,321	-		MMJJ_RS00660	0.23	+0.0
128,322	+		MMJJ_RS00660	0.23	-1.6
128,322	+		MMJJ_RS00660	0.23	+0.7
128,322	+		MMJJ_RS00660	0.23	-1.8
128,322	+		MMJJ_RS00660	0.23	-1.2
128,322	+		MMJJ_RS00660	0.23	-1.4
128,323	-		MMJJ_RS00660	0.23	-1.6
128,324	+		MMJJ_RS00660	0.23	+0.5
128,324	+		MMJJ_RS00660	0.23	-2.0
128,324	+		MMJJ_RS00660	0.23	-2.2
128,326	-		MMJJ_RS00660	0.23	-1.3
128,327	+		MMJJ_RS00660	0.23	-1.8
128,331	+		MMJJ_RS00660	0.24	-3.1
128,394	-		MMJJ_RS00660	0.32	-0.1
128,395	+		MMJJ_RS00660	0.32	-0.1
128,395	+		MMJJ_RS00660	0.32	-0.1
128,400	-		MMJJ_RS00660	0.32	-0.6
128,442	-		MMJJ_RS00660	0.37	-0.7
128,452	-		MMJJ_RS00660	0.39	-1.5
128,454	-		MMJJ_RS00660	0.39	-0.6
128,459	-		MMJJ_RS00660	0.39	+0.4
128,486	+		MMJJ_RS00660	0.43	-1.1
128,488	-		MMJJ_RS00660	0.43	-0.2
128,489	+		MMJJ_RS00660	0.43	-1.1
128,490	-		MMJJ_RS00660	0.43	-0.9
128,492	-		MMJJ_RS00660	0.43	-0.9
128,493	+		MMJJ_RS00660	0.44	-0.7
128,527	+		MMJJ_RS00660	0.48	-1.0
128,621	+		MMJJ_RS00660	0.59	-1.6
128,621	+		MMJJ_RS00660	0.59	-0.8
128,639	-				+0.2
128,710	+		MMJJ_RS00660	0.70	-0.8
128,714	-		MMJJ_RS00660	0.70	+0.6
128,714	-		MMJJ_RS00660	0.70	+1.2
128,715	+		MMJJ_RS00660	0.70	-2.0
128,715	+		MMJJ_RS00660	0.70	-0.6
128,735	-		MMJJ_RS00660	0.73	-0.1
128,760	-		MMJJ_RS00660	0.76	-0.6
128,761	+		MMJJ_RS00660	0.76	-1.2
128,761	+		MMJJ_RS00660	0.76	-1.5
128,839	-		MMJJ_RS00660	0.85	-0.6
128,839	-		MMJJ_RS00660	0.85	-2.0
128,856	-		MMJJ_RS00660	0.88	-1.0
128,894	-				-1.7
128,939	+				-0.5
128,960	-				-1.8
129,019	-				-0.4
129,019	-				-2.2
129,019	-				-1.2
129,073	+				-0.9
129,091	+		MMJJ_RS00665	0.10	-1.9
129,134	-		MMJJ_RS00665	0.13	-1.8
129,134	-		MMJJ_RS00665	0.13	-1.7
129,135	+		MMJJ_RS00665	0.14	-2.9
129,135	+		MMJJ_RS00665	0.14	-1.7
129,145	+		MMJJ_RS00665	0.14	-2.9
129,198	+		MMJJ_RS00665	0.18	-1.9
129,241	-		MMJJ_RS00665	0.22	-2.3
129,241	-		MMJJ_RS00665	0.22	+0.1
129,248	-		MMJJ_RS00665	0.22	-1.0
129,249	+		MMJJ_RS00665	0.22	-1.2
129,273	-		MMJJ_RS00665	0.24	-0.4
129,273	-		MMJJ_RS00665	0.24	-2.1
129,273	-		MMJJ_RS00665	0.24	-1.2
129,324	-		MMJJ_RS00665	0.28	-2.3
129,347	+		MMJJ_RS00665	0.30	-1.6
129,365	-		MMJJ_RS00665	0.31	-1.4
129,365	-		MMJJ_RS00665	0.31	-1.5
129,365	-		MMJJ_RS00665	0.31	-0.5
129,366	+		MMJJ_RS00665	0.31	-1.3
129,366	+		MMJJ_RS00665	0.31	-1.5
129,366	+		MMJJ_RS00665	0.31	-0.5
129,369	+		MMJJ_RS00665	0.31	-2.9
129,376	-		MMJJ_RS00665	0.32	-1.3
129,377	+		MMJJ_RS00665	0.32	-1.7
129,419	-		MMJJ_RS00665	0.35	-2.2
129,419	-		MMJJ_RS00665	0.35	-1.1
129,420	+		MMJJ_RS00665	0.35	-0.6
129,420	+		MMJJ_RS00665	0.35	-0.4
129,448	-		MMJJ_RS00665	0.38	-1.8
129,504	-		MMJJ_RS00665	0.42	-2.5
129,537	+		MMJJ_RS00665	0.44	-3.3
129,543	-		MMJJ_RS00665	0.45	-1.7
129,544	+		MMJJ_RS00665	0.45	-0.0
129,547	-		MMJJ_RS00665	0.45	-1.8
129,583	-		MMJJ_RS00665	0.48	-2.3
129,637	-		MMJJ_RS00665	0.52	-0.3
129,656	+		MMJJ_RS00665	0.54	-1.6
129,656	+		MMJJ_RS00665	0.54	-0.5
129,656	+		MMJJ_RS00665	0.54	-1.4
129,664	-		MMJJ_RS00665	0.54	+0.2
129,739	-		MMJJ_RS00665	0.60	-1.2
129,740	+		MMJJ_RS00665	0.60	-0.0
129,846	+		MMJJ_RS00665	0.68	-2.0
129,846	+		MMJJ_RS00665	0.68	-1.6
129,865	-		MMJJ_RS00665	0.70	-1.8
129,865	-		MMJJ_RS00665	0.70	-1.7
129,866	+		MMJJ_RS00665	0.70	-2.0
129,867	-		MMJJ_RS00665	0.70	-0.6
129,870	+		MMJJ_RS00665	0.70	-2.3