Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08495

Experiment: Formate 100 mM hypophosphite

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate 100 mM hypophosphite
1,561,601	-		MMJJ_RS08485	0.63	+0.2
1,561,614	-		MMJJ_RS08485	0.66	+1.9
1,561,615	+		MMJJ_RS08485	0.66	+0.4
1,561,637	-		MMJJ_RS08485	0.71	-0.7
1,561,683	-		MMJJ_RS08485	0.82	+0.6
1,561,683	-		MMJJ_RS08485	0.82	+1.9
1,561,685	-		MMJJ_RS08485	0.83	+2.4
1,561,685	-		MMJJ_RS08485	0.83	+0.1
1,561,686	+		MMJJ_RS08485	0.83	-1.1
1,561,716	-				+1.8
1,561,716	-				-0.3
1,561,756	-				+0.1
1,561,756	-				+0.3
1,561,766	+				+0.9
1,561,827	+				+1.1
1,561,833	-				+1.0
1,561,847	-				-0.4
1,561,847	-				+0.8
1,561,847	-				-1.1
1,561,847	-				-1.4
1,561,848	+				-1.0
1,561,848	+				-0.3
1,561,848	+				+0.3
1,561,860	-				-1.7
1,561,861	+				+1.8
1,561,861	+				+0.8
1,561,862	-				+0.0
1,561,863	+				+0.8
1,561,879	-				+0.6
1,561,883	-				+2.1
1,561,884	+				+1.2
1,561,915	+				-0.3
1,561,950	-				-0.3
1,561,960	+				-1.8
1,561,968	-				-0.8
1,561,968	-				+1.7
1,561,969	+				-0.4
1,561,972	-				-0.1
1,561,977	+				+0.5
1,562,147	+		MMJJ_RS08490	0.45	+0.4
1,562,274	-		MMJJ_RS08490	0.75	-0.1
1,562,275	+		MMJJ_RS08490	0.75	+0.7
1,562,291	+		MMJJ_RS08490	0.79	-1.0
1,562,291	+		MMJJ_RS08490	0.79	+1.4
1,562,369	+				-0.4
1,562,390	+				-0.1
1,562,390	+				-1.3
1,562,397	-				-0.7
1,562,399	-				-1.2
1,562,400	+				-0.3
1,562,401	-				+0.4
1,562,440	-				-0.3
1,562,440	-				+3.6
1,562,453	-				-0.3
1,562,454	+				+0.7
1,562,473	+				+0.0
1,562,490	+				+1.3
1,562,490	+				+0.3
1,562,490	+				-0.3
1,562,496	-				+0.3
1,562,496	-				-0.4
1,562,496	-				+2.4
1,562,497	+				+0.1
1,562,497	+				+0.5
1,562,497	+				+0.7
1,562,497	+				-0.3
1,562,497	+				+0.0
1,562,501	+				+2.0
1,562,507	+				+0.3
1,562,507	+				+1.8
1,562,511	-				+1.2
1,562,511	-				-1.0
1,562,512	+				+1.5
1,562,526	-				+1.5
1,562,527	+				+2.6
1,562,531	+				+0.5
1,562,533	-				-0.3
1,562,550	-				-0.4
1,562,633	-				-0.1
1,562,633	-				-1.0
1,562,634	+				+0.6
1,562,638	-				-1.9
1,562,680	-				-0.2
1,562,724	-		MMJJ_RS08495	0.13	+0.6
1,562,724	-		MMJJ_RS08495	0.13	+1.3
1,562,763	-		MMJJ_RS08495	0.16	-1.3
1,562,790	+		MMJJ_RS08495	0.19	-0.8
1,562,795	+		MMJJ_RS08495	0.19	-0.0
1,562,795	+		MMJJ_RS08495	0.19	-0.9
1,562,826	-		MMJJ_RS08495	0.22	-0.4
1,562,826	-		MMJJ_RS08495	0.22	+0.6
1,562,827	+		MMJJ_RS08495	0.22	-1.5
1,562,845	-		MMJJ_RS08495	0.23	-0.3
1,562,846	+		MMJJ_RS08495	0.23	-0.4
1,562,902	-		MMJJ_RS08495	0.28	-0.7
1,562,902	-		MMJJ_RS08495	0.28	+0.1
1,562,902	-		MMJJ_RS08495	0.28	-0.2
1,562,903	+		MMJJ_RS08495	0.28	-0.2
1,562,903	+		MMJJ_RS08495	0.28	-1.1
1,562,909	-		MMJJ_RS08495	0.28	+0.2
1,562,915	+		MMJJ_RS08495	0.29	+0.3
1,562,935	-		MMJJ_RS08495	0.30	+0.0
1,562,978	-		MMJJ_RS08495	0.34	-0.2
1,562,993	-		MMJJ_RS08495	0.35	+1.7
1,562,993	-		MMJJ_RS08495	0.35	-0.1
1,562,994	+		MMJJ_RS08495	0.35	+1.6
1,563,003	-		MMJJ_RS08495	0.36	-2.1
1,563,004	+		MMJJ_RS08495	0.36	-0.0
1,563,042	+		MMJJ_RS08495	0.39	+2.8
1,563,052	-		MMJJ_RS08495	0.40	-0.7
1,563,115	-		MMJJ_RS08495	0.45	+0.1
1,563,139	+				+3.6
1,563,171	-		MMJJ_RS08495	0.50	+0.6
1,563,171	-		MMJJ_RS08495	0.50	-1.0
1,563,172	+		MMJJ_RS08495	0.50	-0.6
1,563,172	+		MMJJ_RS08495	0.50	+0.6
1,563,172	+		MMJJ_RS08495	0.50	-0.0
1,563,172	+		MMJJ_RS08495	0.50	+0.0
1,563,176	+		MMJJ_RS08495	0.50	+0.9
1,563,207	-		MMJJ_RS08495	0.53	-1.1
1,563,214	+		MMJJ_RS08495	0.53	+0.4
1,563,303	+		MMJJ_RS08495	0.61	-1.6
1,563,309	-		MMJJ_RS08495	0.61	-0.1
1,563,309	-		MMJJ_RS08495	0.61	-0.5
1,563,310	+		MMJJ_RS08495	0.61	-0.1
1,563,354	-		MMJJ_RS08495	0.65	-1.6
1,563,354	-		MMJJ_RS08495	0.65	+2.0
1,563,355	+		MMJJ_RS08495	0.65	-0.0
1,563,395	+		MMJJ_RS08495	0.68	-0.5
1,563,402	-		MMJJ_RS08495	0.69	+0.1
1,563,467	-		MMJJ_RS08495	0.74	-0.1
1,563,467	-		MMJJ_RS08495	0.74	-1.2
1,563,468	+		MMJJ_RS08495	0.74	-2.8
1,563,496	+		MMJJ_RS08495	0.76	-1.6
1,563,517	+		MMJJ_RS08495	0.78	-0.3
1,563,547	-		MMJJ_RS08495	0.81	-0.1
1,563,547	-		MMJJ_RS08495	0.81	-1.4
1,563,548	+		MMJJ_RS08495	0.81	+0.4
1,563,592	+		MMJJ_RS08495	0.84	-0.8
1,563,628	-		MMJJ_RS08495	0.87	-1.8
1,563,628	-		MMJJ_RS08495	0.87	+0.5
1,563,628	-		MMJJ_RS08495	0.87	-0.1
1,563,628	-		MMJJ_RS08495	0.87	-0.3
1,563,628	-		MMJJ_RS08495	0.87	-0.3
1,563,628	-		MMJJ_RS08495	0.87	+2.1
1,563,629	+		MMJJ_RS08495	0.87	-1.5
1,563,629	+		MMJJ_RS08495	0.87	-0.1
1,563,629	+		MMJJ_RS08495	0.87	-1.6
1,563,629	+		MMJJ_RS08495	0.87	-0.3
1,563,629	+				+3.3
1,563,629	+		MMJJ_RS08495	0.87	-0.0
1,563,629	+		MMJJ_RS08495	0.87	+1.3
1,563,629	+		MMJJ_RS08495	0.87	+0.1
1,563,664	-				-0.4
1,563,671	-				-0.0
1,563,672	+				+0.2
1,563,679	+				-0.8
1,563,679	+				-0.8
1,563,680	-				+0.1
1,563,680	-				+1.9
1,563,680	-				-0.5
1,563,680	-				+0.4
1,563,680	-				+0.5
1,563,681	+				-0.1
1,563,681	+				-0.5
1,563,681	+				-0.2
1,563,681	+				-1.4
1,563,681	+				+1.6
1,563,684	-				+0.2
1,563,684	-				+0.6
1,563,684	-				+0.4
1,563,685	+				-0.3
1,563,685	+				-1.2
1,563,685	+				-0.6
1,563,685	+				-0.4
1,563,694	-				+0.7
1,563,695	+				-1.1
1,563,699	-				-1.1
1,563,699	-				-0.6
1,563,699	-				+0.9
1,563,699	-				+0.6
1,563,700	+				+0.6
1,563,700	+				+0.6
1,563,700	+				-0.6
1,563,700	+				-1.1
1,563,710	-				-0.0
1,563,711	+				-0.2
1,563,711	+				+0.6
1,563,731	-				-1.0
1,563,732	+				+0.3
1,563,819	-				-1.5
1,563,825	-				-1.3
1,563,830	-				+0.1
1,563,830	-				+1.5
1,563,831	+				-0.5
1,563,831	+				-0.3
1,563,831	+				+1.0
1,563,831	+				-1.7
1,563,831	+				+0.3
1,563,848	-				+0.3
1,563,848	-				-0.2
1,563,852	-				-0.4
1,563,852	-				-0.6
1,563,852	-				+0.4
1,563,853	+				+0.2
1,563,854	-				+0.3
1,563,857	+				+0.0
1,563,874	-				+0.9
1,563,877	-				-0.5
1,563,877	-				+1.0
1,563,908	+				+2.9
1,563,916	-				-0.4
1,563,968	+				+0.5
1,563,968	+				+2.2
1,563,972	-				+1.9
1,563,972	-				-0.9
1,563,972	-				+1.5
1,563,973	+				-0.9
1,563,973	+				+0.0
1,564,062	-		MMJJ_RS08500	0.15	+1.4
1,564,063	+		MMJJ_RS08500	0.15	-0.0
1,564,089	-		MMJJ_RS08500	0.18	-1.3
1,564,104	+		MMJJ_RS08500	0.19	-1.9
1,564,143	-		MMJJ_RS08500	0.23	-0.4
1,564,144	+		MMJJ_RS08500	0.23	-0.0
1,564,200	-		MMJJ_RS08500	0.28	+2.7
1,564,271	-		MMJJ_RS08500	0.35	+0.4
1,564,287	-		MMJJ_RS08500	0.36	-0.5
1,564,328	-		MMJJ_RS08500	0.40	+1.3
1,564,344	-		MMJJ_RS08500	0.42	+0.3
1,564,345	+		MMJJ_RS08500	0.42	+0.8
1,564,435	-		MMJJ_RS08500	0.51	+2.1
1,564,679	-		MMJJ_RS08500	0.74	+1.1
1,564,680	+		MMJJ_RS08500	0.74	+1.5