Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08200

Experiment: Formate 100 mM hypophosphite

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate 100 mM hypophosphite
1,504,534	-				+3.1
1,504,573	+		MMJJ_RS08190	0.46	-0.1
1,504,622	-		MMJJ_RS08190	0.55	+2.6
1,504,622	-		MMJJ_RS08190	0.55	+0.5
1,504,623	+				+3.3
1,504,623	+				+4.1
1,504,627	-		MMJJ_RS08190	0.56	+2.5
1,504,627	-		MMJJ_RS08190	0.56	+2.5
1,504,627	-		MMJJ_RS08190	0.56	+1.6
1,504,628	+		MMJJ_RS08190	0.56	+2.9
1,504,677	-		MMJJ_RS08190	0.65	+2.3
1,504,832	+				+0.9
1,504,885	-				-1.5
1,504,885	-				+0.3
1,504,885	-				+1.6
1,504,885	-				-1.3
1,504,885	-				-0.2
1,504,885	-				-0.6
1,504,885	-				+0.1
1,504,885	-				-1.0
1,504,886	+				-0.9
1,504,886	+				-1.0
1,504,886	+				-0.7
1,504,886	+				+0.3
1,504,893	-				-0.7
1,504,894	+				+1.7
1,504,898	-				-0.0
1,504,898	-				+0.1
1,504,898	-				+2.3
1,504,898	-				-0.2
1,504,899	+				-0.5
1,504,899	+				-1.3
1,504,899	+				+0.5
1,504,917	-				-1.2
1,504,923	-				-1.2
1,504,996	-		MMJJ_RS08195	0.13	+1.1
1,505,017	+		MMJJ_RS08195	0.19	+0.1
1,505,040	+		MMJJ_RS08195	0.25	+0.5
1,505,097	-		MMJJ_RS08195	0.40	-1.0
1,505,153	-		MMJJ_RS08195	0.55	-2.3
1,505,195	-		MMJJ_RS08195	0.67	-0.3
1,505,216	-		MMJJ_RS08195	0.72	+0.9
1,505,219	+		MMJJ_RS08195	0.73	+0.2
1,505,219	+		MMJJ_RS08195	0.73	-0.1
1,505,225	-		MMJJ_RS08195	0.75	-0.4
1,505,250	+		MMJJ_RS08195	0.81	-0.0
1,505,256	+		MMJJ_RS08195	0.83	+0.5
1,505,293	-				-1.5
1,505,313	+				+2.0
1,505,318	-				-0.7
1,505,318	-				+1.5
1,505,362	-				-1.8
1,505,362	-				+1.2
1,505,362	-				-0.1
1,505,378	+				-0.5
1,505,378	+				-0.7
1,505,407	-				+0.5
1,505,412	-				+0.3
1,505,412	-				+0.1
1,505,413	+				+1.8
1,505,414	-				+0.7
1,505,414	-				-0.4
1,505,488	-				-1.1
1,505,489	+				-0.3
1,505,489	+				+3.1
1,505,494	-				+0.0
1,505,495	+				-0.5
1,505,497	-				+0.6
1,505,498	+				+1.6
1,505,516	-				+0.8
1,505,517	+				-0.7
1,505,517	+				-0.1
1,505,517	+				+0.6
1,505,517	+				+0.1
1,505,517	+				+0.3
1,505,517	+				+0.3
1,505,517	+				-0.0
1,505,551	-				+1.3
1,505,551	-				+1.7
1,505,552	+				+0.1
1,505,552	+				+0.9
1,505,554	-				+0.1
1,505,554	-				+0.0
1,505,555	+				+0.5
1,505,555	+				-0.2
1,505,555	+				-0.9
1,505,590	-				-0.1
1,505,590	-				+0.0
1,505,590	-				-0.5
1,505,591	+				+1.1
1,505,591	+				+0.9
1,505,652	-		MMJJ_RS08200	0.11	+1.8
1,505,653	+		MMJJ_RS08200	0.12	-0.5
1,505,698	-		MMJJ_RS08200	0.14	-0.6
1,505,740	-		MMJJ_RS08200	0.16	+0.9
1,505,741	+		MMJJ_RS08200	0.16	+0.2
1,505,742	-		MMJJ_RS08200	0.16	+1.0
1,505,742	-		MMJJ_RS08200	0.16	+1.4
1,505,868	-		MMJJ_RS08200	0.22	+0.3
1,505,875	-		MMJJ_RS08200	0.23	+0.2
1,505,879	-		MMJJ_RS08200	0.23	+0.5
1,505,879	-		MMJJ_RS08200	0.23	+1.8
1,505,880	+		MMJJ_RS08200	0.23	+1.4
1,505,898	+		MMJJ_RS08200	0.24	-0.6
1,505,898	+		MMJJ_RS08200	0.24	+0.9
1,505,998	+		MMJJ_RS08200	0.29	+2.6
1,506,025	+		MMJJ_RS08200	0.30	+0.7
1,506,098	-		MMJJ_RS08200	0.34	+0.5
1,506,098	-		MMJJ_RS08200	0.34	-0.4
1,506,098	-		MMJJ_RS08200	0.34	+2.1
1,506,099	+		MMJJ_RS08200	0.34	+0.8
1,506,099	+		MMJJ_RS08200	0.34	-0.2
1,506,111	-		MMJJ_RS08200	0.34	+0.6
1,506,111	-		MMJJ_RS08200	0.34	-0.3
1,506,111	-		MMJJ_RS08200	0.34	+0.0
1,506,112	+		MMJJ_RS08200	0.34	+0.1
1,506,112	+		MMJJ_RS08200	0.34	+1.0
1,506,133	-		MMJJ_RS08200	0.35	-0.1
1,506,133	-		MMJJ_RS08200	0.35	+0.3
1,506,133	-		MMJJ_RS08200	0.35	+0.9
1,506,134	+		MMJJ_RS08200	0.36	+1.9
1,506,134	+				+1.8
1,506,134	+		MMJJ_RS08200	0.36	+0.4
1,506,134	+		MMJJ_RS08200	0.36	+1.3
1,506,137	-		MMJJ_RS08200	0.36	-0.4
1,506,138	+		MMJJ_RS08200	0.36	-2.1
1,506,155	+		MMJJ_RS08200	0.37	-0.8
1,506,166	+		MMJJ_RS08200	0.37	+0.1
1,506,190	-		MMJJ_RS08200	0.38	+2.1
1,506,192	-		MMJJ_RS08200	0.38	-1.5
1,506,195	-		MMJJ_RS08200	0.39	-0.5
1,506,195	-		MMJJ_RS08200	0.39	-0.0
1,506,195	-		MMJJ_RS08200	0.39	+1.1
1,506,249	-		MMJJ_RS08200	0.41	+1.9
1,506,249	-		MMJJ_RS08200	0.41	+0.9
1,506,249	-		MMJJ_RS08200	0.41	-0.7
1,506,249	-		MMJJ_RS08200	0.41	-1.0
1,506,249	-		MMJJ_RS08200	0.41	+0.5
1,506,249	-		MMJJ_RS08200	0.41	+0.8
1,506,249	-		MMJJ_RS08200	0.41	-0.9
1,506,253	-		MMJJ_RS08200	0.41	+1.6
1,506,260	-		MMJJ_RS08200	0.42	-0.6
1,506,260	-		MMJJ_RS08200	0.42	+0.2
1,506,493	+		MMJJ_RS08200	0.53	-0.3
1,506,519	+		MMJJ_RS08200	0.55	+0.3
1,506,519	+		MMJJ_RS08200	0.55	+0.1
1,506,519	+		MMJJ_RS08200	0.55	+1.6
1,506,535	-		MMJJ_RS08200	0.56	+0.7
1,506,536	+		MMJJ_RS08200	0.56	+3.6
1,506,594	-		MMJJ_RS08200	0.58	+0.9
1,506,594	-		MMJJ_RS08200	0.58	-0.5
1,506,594	-		MMJJ_RS08200	0.58	+0.0
1,506,594	-		MMJJ_RS08200	0.58	+0.4
1,506,598	-		MMJJ_RS08200	0.59	+3.5
1,506,598	-		MMJJ_RS08200	0.59	+0.6
1,506,605	-		MMJJ_RS08200	0.59	+0.0
1,506,838	+		MMJJ_RS08200	0.71	+0.3
1,506,864	+		MMJJ_RS08200	0.72	+0.6
1,506,869	+		MMJJ_RS08200	0.72	-0.6
1,506,869	+		MMJJ_RS08200	0.72	-0.3
1,506,869	+		MMJJ_RS08200	0.72	+2.2
1,506,876	+		MMJJ_RS08200	0.73	+0.4
1,506,880	-		MMJJ_RS08200	0.73	-0.9
1,506,881	+		MMJJ_RS08200	0.73	+0.7
1,507,054	-		MMJJ_RS08200	0.81	+1.1
1,507,054	-		MMJJ_RS08200	0.81	-0.0
1,507,055	+		MMJJ_RS08200	0.81	-0.1
1,507,055	+		MMJJ_RS08200	0.81	-1.1
1,507,064	-		MMJJ_RS08200	0.82	+0.7
1,507,065	+		MMJJ_RS08200	0.82	+0.3
1,507,098	+		MMJJ_RS08200	0.84	+0.5
1,507,111	-		MMJJ_RS08200	0.84	+1.2
1,507,113	-		MMJJ_RS08200	0.84	+0.1
1,507,118	-		MMJJ_RS08200	0.85	+1.6
1,507,119	+		MMJJ_RS08200	0.85	-0.7
1,507,119	+		MMJJ_RS08200	0.85	+1.0
1,507,120	-		MMJJ_RS08200	0.85	+1.4
1,507,120	-		MMJJ_RS08200	0.85	+1.7
1,507,120	-		MMJJ_RS08200	0.85	-1.2
1,507,120	-		MMJJ_RS08200	0.85	-1.3
1,507,120	-		MMJJ_RS08200	0.85	-0.1
1,507,138	-		MMJJ_RS08200	0.86	+0.9
1,507,139	+		MMJJ_RS08200	0.86	-0.4
1,507,143	-		MMJJ_RS08200	0.86	-0.7
1,507,144	+		MMJJ_RS08200	0.86	-2.3
1,507,194	-		MMJJ_RS08200	0.88	+0.2
1,507,279	-				+0.9
1,507,279	-				+0.1
1,507,279	-				-0.7
1,507,279	-				+0.6
1,507,312	-				+2.3
1,507,318	-				+1.9
1,507,318	-				-0.2
1,507,319	+				-2.1
1,507,335	-				+1.6
1,507,336	+				+0.3
1,507,336	+				+1.5
1,507,353	-				+0.2
1,507,367	+				-1.2
1,507,367	+				+0.6
1,507,371	-				+0.4
1,507,400	+				-2.2
1,507,405	-				+0.8
1,507,405	-				-0.4
1,507,410	-				+0.7
1,507,410	-				+0.1
1,507,411	+				-0.6
1,507,477	+				-0.1
1,507,477	+				+0.7
1,507,479	-				+0.9
1,507,480	+				+1.0
1,507,483	-				-0.2
1,507,516	-				-0.3
1,507,531	-				+0.6
1,507,541	-				+0.4
1,507,560	+				+1.0
1,507,577	-				+0.4
1,507,583	-				-1.0
1,507,584	+				+1.8
1,507,598	-				+1.1
1,507,598	-				+0.3
1,507,599	+				-0.5
1,507,599	+				-0.3
1,507,635	-				+0.5
1,507,635	-				+0.8
1,507,660	-				+0.1
1,507,664	-				-0.7
1,507,664	-				-0.3
1,507,664	-				+2.1
1,507,664	-				-0.4
1,507,664	-				-0.4
1,507,664	-				+0.3
1,507,665	+				-0.9
1,507,665	+				+0.8
1,507,668	-				-0.3
1,507,668	-				-0.5
1,507,668	-				-1.2
1,507,669	+				-0.2
1,507,669	+				-0.3
1,507,674	-				-0.4
1,507,675	+				+0.4
1,507,675	+				+1.2
1,507,701	-				-1.0
1,507,702	+				+1.5
1,507,716	+				-0.3
1,507,735	+				+0.4
1,507,741	-				+0.4
1,507,741	-				-0.8
1,507,741	-				-1.3
1,507,741	-				+1.1
1,507,741	-				+1.0
1,507,742	+				-0.7
1,507,742	+				+0.3
1,507,742	+				-0.3
1,507,742	+				+0.4
1,507,742	+				+1.2
1,507,751	-				-0.5
1,507,752	+				+0.2
1,507,752	+				+2.2
1,507,774	-				+0.5
1,507,774	-				+1.4
1,507,774	-				-0.1
1,507,774	-				+0.1
1,507,774	-				+0.5
1,507,775	+				-0.5
1,507,775	+				-2.2
1,507,775	+				+0.1
1,507,775	+				-0.1
1,507,776	-				-0.5
1,507,776	-				+1.0
1,507,776	-				+1.2
1,507,776	-				-1.4
1,507,776	-				+0.8
1,507,776	-				+0.8
1,507,776	-				-0.8
1,507,776	-				+1.2
1,507,776	-				-1.1
1,507,777	+				-1.2
1,507,777	+				+0.0
1,507,777	+				+0.7
1,507,777	+				+1.2
1,507,777	+				+0.9
1,507,777	+				+0.7
1,507,778	-				+0.1
1,507,780	-				-0.6
1,507,780	-				-0.4
1,507,780	-				-0.3
1,507,781	+				+0.1
1,507,781	+				+0.8
1,507,781	+				-0.8
1,507,781	+				+0.5
1,507,810	+				-1.3
1,507,853	-				+0.3
1,507,854	+				-0.2
1,507,854	+				+0.0
1,507,883	-				+0.9
1,507,940	-		MMJJ_RS08210	0.10	+1.3
1,507,941	+		MMJJ_RS08210	0.10	+0.3
1,507,989	-		MMJJ_RS08210	0.11	+0.4
1,508,013	-		MMJJ_RS08210	0.12	+0.3
1,508,040	-		MMJJ_RS08210	0.12	-1.8
1,508,040	-		MMJJ_RS08210	0.12	-0.3
1,508,049	+		MMJJ_RS08210	0.13	+0.3
1,508,052	+		MMJJ_RS08210	0.13	-0.1
1,508,061	-		MMJJ_RS08210	0.13	-0.4
1,508,061	-		MMJJ_RS08210	0.13	-1.6
1,508,061	-		MMJJ_RS08210	0.13	+0.3
1,508,061	-		MMJJ_RS08210	0.13	-0.6
1,508,062	+		MMJJ_RS08210	0.13	-0.1
1,508,062	+		MMJJ_RS08210	0.13	-0.1
1,508,062	+		MMJJ_RS08210	0.13	-0.8
1,508,063	-		MMJJ_RS08210	0.13	+1.3
1,508,063	-		MMJJ_RS08210	0.13	-0.0
1,508,063	-		MMJJ_RS08210	0.13	-0.6
1,508,063	-		MMJJ_RS08210	0.13	+0.6
1,508,064	+		MMJJ_RS08210	0.13	+1.5
1,508,067	+		MMJJ_RS08210	0.13	-1.7
1,508,067	+		MMJJ_RS08210	0.13	+0.9
1,508,069	-		MMJJ_RS08210	0.13	+1.2
1,508,073	+		MMJJ_RS08210	0.13	+0.1
1,508,073	+		MMJJ_RS08210	0.13	+0.5
1,508,073	+		MMJJ_RS08210	0.13	-0.6
1,508,089	+		MMJJ_RS08210	0.14	+0.3
1,508,096	-		MMJJ_RS08210	0.14	+2.6
1,508,096	-		MMJJ_RS08210	0.14	+0.6
1,508,127	+		MMJJ_RS08210	0.14	+0.7
1,508,189	+		MMJJ_RS08210	0.16	+0.3
1,508,205	-		MMJJ_RS08210	0.16	+0.3
1,508,205	-		MMJJ_RS08210	0.16	+1.7
1,508,206	+		MMJJ_RS08210	0.16	-0.4
1,508,234	-		MMJJ_RS08210	0.17	+0.9
1,508,234	-		MMJJ_RS08210	0.17	-0.1
1,508,297	-		MMJJ_RS08210	0.18	+1.0
1,508,303	-		MMJJ_RS08210	0.18	-0.5
1,508,308	+		MMJJ_RS08210	0.18	+0.2
1,508,314	+		MMJJ_RS08210	0.19	+0.5
1,508,334	-		MMJJ_RS08210	0.19	-0.0
1,508,334	-		MMJJ_RS08210	0.19	+2.8
1,508,334	-		MMJJ_RS08210	0.19	-1.2
1,508,334	-		MMJJ_RS08210	0.19	-0.9
1,508,334	-		MMJJ_RS08210	0.19	-0.6
1,508,334	-		MMJJ_RS08210	0.19	+2.0
1,508,335	+		MMJJ_RS08210	0.19	+0.5
1,508,335	+		MMJJ_RS08210	0.19	-0.3
1,508,402	+		MMJJ_RS08210	0.20	+0.4
1,508,416	+		MMJJ_RS08210	0.21	+0.5
1,508,424	+		MMJJ_RS08210	0.21	+1.3