Experiment: Formate 100 mM hypophosphite
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02960 and MMJJ_RS02965 are separated by 0 nucleotides MMJJ_RS02965 and MMJJ_RS02970 are separated by 266 nucleotides MMJJ_RS02970 and MMJJ_RS02975 are separated by 38 nucleotides MMJJ_RS02975 and MMJJ_RS02980 are separated by 18 nucleotides
MMJJ_RS02960: MMJJ_RS02960 - RimK family alpha-L-glutamate ligase, at 552,340 to 553,290
_RS02960
MMJJ_RS02965: MMJJ_RS02965 - RimK-like ATPgrasp N-terminal domain-containing protein, at 553,291 to 553,896
_RS02965
MMJJ_RS02970: MMJJ_RS02970 - DUF378 domain-containing protein, at 554,163 to 554,411
_RS02970
MMJJ_RS02975: MMJJ_RS02975 - NAD(P)H-dependent oxidoreductase, at 554,450 to 554,944
_RS02975
MMJJ_RS02980: MMJJ_RS02980 - TatD family hydrolase, at 554,963 to 555,724
_RS02980
Position (kb) 554
555 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 553.209 kb on - strand at 553.248 kb on - strand at 553.248 kb on - strand at 553.248 kb on - strand at 553.249 kb on + strand at 553.249 kb on + strand at 553.480 kb on - strand, within MMJJ_RS02965 at 553.481 kb on + strand, within MMJJ_RS02965 at 553.611 kb on - strand, within MMJJ_RS02965 at 553.613 kb on - strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.616 kb on - strand, within MMJJ_RS02965 at 553.616 kb on - strand, within MMJJ_RS02965 at 553.617 kb on + strand, within MMJJ_RS02965 at 553.617 kb on + strand, within MMJJ_RS02965 at 553.638 kb on + strand, within MMJJ_RS02965 at 553.643 kb on + strand, within MMJJ_RS02965 at 553.643 kb on + strand, within MMJJ_RS02965 at 553.747 kb on + strand, within MMJJ_RS02965 at 553.749 kb on + strand, within MMJJ_RS02965 at 554.009 kb on - strand at 554.009 kb on - strand at 554.010 kb on + strand at 554.010 kb on + strand at 554.010 kb on + strand at 554.011 kb on - strand at 554.023 kb on - strand at 554.024 kb on + strand at 554.095 kb on - strand at 554.095 kb on - strand at 554.095 kb on - strand at 554.096 kb on + strand at 554.096 kb on + strand at 554.097 kb on - strand at 554.098 kb on + strand at 554.116 kb on + strand at 554.120 kb on - strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.122 kb on - strand at 554.123 kb on + strand at 554.147 kb on + strand at 554.147 kb on + strand at 554.160 kb on + strand at 554.181 kb on + strand at 554.242 kb on - strand, within MMJJ_RS02970 at 554.246 kb on - strand, within MMJJ_RS02970 at 554.247 kb on + strand, within MMJJ_RS02970 at 554.247 kb on + strand, within MMJJ_RS02970 at 554.260 kb on - strand, within MMJJ_RS02970 at 554.273 kb on - strand, within MMJJ_RS02970 at 554.273 kb on - strand, within MMJJ_RS02970 at 554.274 kb on + strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.300 kb on - strand, within MMJJ_RS02970 at 554.302 kb on - strand, within MMJJ_RS02970 at 554.302 kb on - strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.318 kb on + strand, within MMJJ_RS02970 at 554.321 kb on + strand, within MMJJ_RS02970 at 554.353 kb on - strand, within MMJJ_RS02970 at 554.353 kb on - strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.355 kb on - strand, within MMJJ_RS02970 at 554.356 kb on + strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.358 kb on + strand, within MMJJ_RS02970 at 554.358 kb on + strand, within MMJJ_RS02970 at 554.372 kb on + strand, within MMJJ_RS02970 at 554.380 kb on - strand, within MMJJ_RS02970 at 554.381 kb on + strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.392 kb on + strand at 554.392 kb on + strand at 554.392 kb on + strand at 554.395 kb on + strand at 554.427 kb on + strand at 554.469 kb on - strand at 554.476 kb on - strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.480 kb on - strand at 554.496 kb on - strand at 554.497 kb on + strand at 554.522 kb on - strand, within MMJJ_RS02975 at 554.522 kb on - strand, within MMJJ_RS02975 at 554.531 kb on - strand, within MMJJ_RS02975 at 554.532 kb on + strand, within MMJJ_RS02975 at 554.532 kb on + strand, within MMJJ_RS02975 at 554.551 kb on - strand, within MMJJ_RS02975 at 554.594 kb on + strand, within MMJJ_RS02975 at 554.594 kb on + strand, within MMJJ_RS02975 at 554.653 kb on + strand, within MMJJ_RS02975 at 554.713 kb on - strand, within MMJJ_RS02975 at 554.718 kb on + strand, within MMJJ_RS02975 at 554.888 kb on - strand, within MMJJ_RS02975 at 554.888 kb on - strand, within MMJJ_RS02975 at 554.889 kb on + strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.893 kb on + strand, within MMJJ_RS02975 at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.920 kb on + strand at 554.920 kb on + strand at 554.920 kb on + strand at 554.920 kb on + strand at 554.922 kb on + strand at 554.944 kb on - strand at 554.945 kb on + strand at 554.945 kb on + strand at 554.946 kb on - strand at 554.946 kb on - strand at 554.946 kb on - strand at 554.946 kb on - strand at 554.947 kb on + strand at 554.947 kb on + strand at 554.960 kb on - strand at 554.960 kb on - strand at 554.965 kb on + strand at 554.965 kb on + strand at 554.968 kb on - strand at 554.968 kb on - strand at 554.975 kb on + strand at 554.992 kb on - strand at 554.992 kb on - strand at 554.992 kb on - strand at 554.995 kb on - strand at 554.995 kb on - strand at 555.011 kb on - strand at 555.011 kb on - strand at 555.012 kb on + strand at 555.012 kb on + strand at 555.041 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.094 kb on - strand, within MMJJ_RS02980 at 555.100 kb on - strand, within MMJJ_RS02980 at 555.105 kb on + strand, within MMJJ_RS02980 at 555.138 kb on + strand, within MMJJ_RS02980 at 555.182 kb on + strand, within MMJJ_RS02980 at 555.213 kb on + strand, within MMJJ_RS02980 at 555.243 kb on + strand, within MMJJ_RS02980 at 555.243 kb on + strand, within MMJJ_RS02980 at 555.326 kb on + strand, within MMJJ_RS02980 at 555.344 kb on - strand, within MMJJ_RS02980 at 555.344 kb on - strand, within MMJJ_RS02980 at 555.378 kb on + strand, within MMJJ_RS02980
Per-strain Table
Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite remove 553,209 - +0.3 553,248 - +0.2 553,248 - +0.6 553,248 - -1.8 553,249 + +1.0 553,249 + +0.6 553,480 - MMJJ_RS02965 0.31 -0.2 553,481 + MMJJ_RS02965 0.31 +1.5 553,611 - MMJJ_RS02965 0.53 +0.8 553,613 - MMJJ_RS02965 0.53 +2.1 553,614 + MMJJ_RS02965 0.53 -0.4 553,614 + MMJJ_RS02965 0.53 +0.1 553,614 + MMJJ_RS02965 0.53 -0.2 553,614 + MMJJ_RS02965 0.53 +0.1 553,614 + MMJJ_RS02965 0.53 -1.8 553,614 + MMJJ_RS02965 0.53 +1.1 553,616 - MMJJ_RS02965 0.54 +0.8 553,616 - MMJJ_RS02965 0.54 +0.2 553,617 + MMJJ_RS02965 0.54 +0.2 553,617 + MMJJ_RS02965 0.54 +0.2 553,638 + MMJJ_RS02965 0.57 +0.3 553,643 + MMJJ_RS02965 0.58 +1.0 553,643 + MMJJ_RS02965 0.58 -1.2 553,747 + MMJJ_RS02965 0.75 -0.4 553,749 + MMJJ_RS02965 0.76 -0.1 554,009 - -0.1 554,009 - +1.8 554,010 + -0.3 554,010 + -0.3 554,010 + -0.3 554,011 - -1.6 554,023 - -0.6 554,024 + -0.2 554,095 - -1.6 554,095 - -0.6 554,095 - +0.1 554,096 + -2.0 554,096 + +0.5 554,097 - +1.2 554,098 + -2.5 554,116 + -0.7 554,120 - -0.6 554,121 + -0.1 554,121 + -0.9 554,121 + -1.3 554,121 + +1.9 554,122 - -2.2 554,123 + +0.5 554,147 + -1.1 554,147 + -0.1 554,160 + +0.5 554,181 + -0.5 554,242 - MMJJ_RS02970 0.32 -0.1 554,246 - MMJJ_RS02970 0.33 +0.4 554,247 + MMJJ_RS02970 0.34 -0.5 554,247 + MMJJ_RS02970 0.34 +0.7 554,260 - MMJJ_RS02970 0.39 +0.6 554,273 - MMJJ_RS02970 0.44 -1.3 554,273 - MMJJ_RS02970 0.44 -1.0 554,274 + MMJJ_RS02970 0.45 +0.5 554,297 - MMJJ_RS02970 0.54 -0.4 554,297 - MMJJ_RS02970 0.54 +0.2 554,297 - MMJJ_RS02970 0.54 +0.6 554,297 - MMJJ_RS02970 0.54 -0.4 554,297 - MMJJ_RS02970 0.54 +2.3 554,298 + MMJJ_RS02970 0.54 +4.6 554,298 + MMJJ_RS02970 0.54 +1.8 554,298 + MMJJ_RS02970 0.54 -0.1 554,300 - MMJJ_RS02970 0.55 +0.2 554,302 - MMJJ_RS02970 0.56 +0.0 554,302 - MMJJ_RS02970 0.56 -1.1 554,303 + MMJJ_RS02970 0.56 +0.4 554,303 + MMJJ_RS02970 0.56 +0.9 554,303 + MMJJ_RS02970 0.56 +0.5 554,303 + MMJJ_RS02970 0.56 -0.7 554,303 + MMJJ_RS02970 0.56 -0.5 554,318 + MMJJ_RS02970 0.62 +1.4 554,321 + MMJJ_RS02970 0.63 +0.7 554,353 - MMJJ_RS02970 0.76 +0.1 554,353 - MMJJ_RS02970 0.76 -0.4 554,354 + MMJJ_RS02970 0.77 +1.7 554,354 + MMJJ_RS02970 0.77 +0.3 554,354 + MMJJ_RS02970 0.77 -2.4 554,355 - MMJJ_RS02970 0.77 -0.8 554,356 + MMJJ_RS02970 0.78 -0.1 554,357 - MMJJ_RS02970 0.78 +0.4 554,357 - MMJJ_RS02970 0.78 -0.7 554,357 - MMJJ_RS02970 0.78 -0.7 554,358 + MMJJ_RS02970 0.78 +0.1 554,358 + MMJJ_RS02970 0.78 +1.6 554,372 + MMJJ_RS02970 0.84 -0.8 554,380 - MMJJ_RS02970 0.87 +0.6 554,381 + MMJJ_RS02970 0.88 +0.3 554,382 - MMJJ_RS02970 0.88 +1.2 554,382 - MMJJ_RS02970 0.88 -0.7 554,382 - MMJJ_RS02970 0.88 -0.5 554,382 - MMJJ_RS02970 0.88 +0.8 554,382 - MMJJ_RS02970 0.88 +1.6 554,382 - MMJJ_RS02970 0.88 -0.4 554,382 - MMJJ_RS02970 0.88 -0.1 554,383 + MMJJ_RS02970 0.88 +1.9 554,383 + MMJJ_RS02970 0.88 +0.8 554,383 + MMJJ_RS02970 0.88 +0.3 554,383 + MMJJ_RS02970 0.88 +1.1 554,383 + MMJJ_RS02970 0.88 +0.8 554,383 + MMJJ_RS02970 0.88 +0.3 554,383 + MMJJ_RS02970 0.88 -0.5 554,383 + MMJJ_RS02970 0.88 -2.5 554,392 + -0.6 554,392 + -0.5 554,392 + -0.8 554,395 + -1.2 554,427 + -1.0 554,469 - +0.7 554,476 - +0.1 554,477 + +0.5 554,477 + -0.2 554,477 + +0.1 554,477 + +0.4 554,477 + +0.2 554,480 - -0.8 554,496 - +0.5 554,497 + +1.0 554,522 - MMJJ_RS02975 0.15 -0.6 554,522 - MMJJ_RS02975 0.15 -0.4 554,531 - MMJJ_RS02975 0.16 -0.3 554,532 + MMJJ_RS02975 0.17 +0.6 554,532 + MMJJ_RS02975 0.17 -0.7 554,551 - MMJJ_RS02975 0.20 -0.8 554,594 + MMJJ_RS02975 0.29 -2.1 554,594 + MMJJ_RS02975 0.29 -0.1 554,653 + MMJJ_RS02975 0.41 +2.3 554,713 - MMJJ_RS02975 0.53 +0.5 554,718 + MMJJ_RS02975 0.54 -0.3 554,888 - MMJJ_RS02975 0.88 +0.3 554,888 - MMJJ_RS02975 0.88 -0.4 554,889 + MMJJ_RS02975 0.89 +0.7 554,892 - MMJJ_RS02975 0.89 +0.9 554,892 - MMJJ_RS02975 0.89 -1.2 554,892 - MMJJ_RS02975 0.89 -1.5 554,892 - MMJJ_RS02975 0.89 +0.1 554,893 + MMJJ_RS02975 0.89 +1.5 554,919 - -0.7 554,919 - +0.3 554,919 - -0.4 554,919 - -0.5 554,919 - -1.3 554,919 - +0.8 554,919 - -0.8 554,919 - -0.7 554,919 - +1.0 554,920 + -0.5 554,920 + +0.5 554,920 + +0.8 554,920 + -1.6 554,922 + +0.9 554,944 - +0.4 554,945 + +2.9 554,945 + +0.2 554,946 - +1.3 554,946 - -0.4 554,946 - +1.2 554,946 - -2.3 554,947 + -0.7 554,947 + -0.6 554,960 - -1.7 554,960 - +0.2 554,965 + -0.6 554,965 + +1.4 554,968 - -2.6 554,968 - +0.3 554,975 + -0.4 554,992 - +0.6 554,992 - +0.2 554,992 - +0.1 554,995 - -0.7 554,995 - +1.8 555,011 - +0.8 555,011 - -0.9 555,012 + +0.4 555,012 + -0.6 555,041 - MMJJ_RS02980 0.10 -0.7 555,071 - MMJJ_RS02980 0.14 +0.7 555,071 - MMJJ_RS02980 0.14 -0.3 555,071 - MMJJ_RS02980 0.14 -1.4 555,071 - MMJJ_RS02980 0.14 -0.8 555,072 + MMJJ_RS02980 0.14 -0.4 555,072 + MMJJ_RS02980 0.14 -1.1 555,072 + MMJJ_RS02980 0.14 +0.0 555,072 + MMJJ_RS02980 0.14 -0.9 555,072 + MMJJ_RS02980 0.14 +0.5 555,094 - MMJJ_RS02980 0.17 -0.1 555,100 - MMJJ_RS02980 0.18 -1.2 555,105 + MMJJ_RS02980 0.19 -0.8 555,138 + MMJJ_RS02980 0.23 +0.3 555,182 + MMJJ_RS02980 0.29 -1.1 555,213 + MMJJ_RS02980 0.33 +0.8 555,243 + MMJJ_RS02980 0.37 -0.6 555,243 + MMJJ_RS02980 0.37 -0.7 555,326 + MMJJ_RS02980 0.48 -0.4 555,344 - MMJJ_RS02980 0.50 -0.6 555,344 - MMJJ_RS02980 0.50 +1.0 555,378 + MMJJ_RS02980 0.54 -0.7
Or see this region's nucleotide sequence