Experiment: Formate 100 mM hypophosphite
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02015 and MMJJ_RS02020 are separated by 9 nucleotides MMJJ_RS02020 and MMJJ_RS02025 are separated by 99 nucleotides MMJJ_RS02025 and MMJJ_RS02030 are separated by 80 nucleotides MMJJ_RS02030 and MMJJ_RS02035 are separated by 9 nucleotides
MMJJ_RS02015: MMJJ_RS02015 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 385,923 to 386,651
_RS02015
MMJJ_RS02020: MMJJ_RS02020 - DUF115 domain-containing protein, at 386,661 to 387,377
_RS02020
MMJJ_RS02025: MMJJ_RS02025 - chorismate mutase, at 387,477 to 387,767
_RS02025
MMJJ_RS02030: MMJJ_RS02030 - 30S ribosomal protein S17e, at 387,848 to 388,039
_RS02030
MMJJ_RS02035: MMJJ_RS02035 - 4-hydroxy-tetrahydrodipicolinate synthase, at 388,049 to 388,918
_RS02035
Position (kb) 387
388 Strain fitness (log2 ratio) -1
0
1
2
3 at 386.638 kb on - strand at 386.639 kb on + strand at 386.668 kb on - strand at 386.688 kb on - strand at 386.691 kb on + strand at 386.855 kb on - strand, within MMJJ_RS02020 at 386.951 kb on + strand at 387.235 kb on + strand, within MMJJ_RS02020 at 387.388 kb on - strand at 387.459 kb on + strand at 387.765 kb on - strand at 387.766 kb on + strand at 387.777 kb on + strand at 387.781 kb on + strand at 387.781 kb on + strand at 387.781 kb on + strand at 387.781 kb on + strand at 387.781 kb on + strand at 387.782 kb on - strand at 387.782 kb on - strand at 387.782 kb on - strand at 387.785 kb on + strand at 387.785 kb on + strand at 387.796 kb on + strand at 387.808 kb on - strand at 387.825 kb on + strand at 387.825 kb on + strand at 387.828 kb on - strand at 387.833 kb on - strand at 388.037 kb on - strand at 388.038 kb on + strand at 388.045 kb on + strand at 388.049 kb on + strand at 388.060 kb on + strand at 388.159 kb on - strand, within MMJJ_RS02035 at 388.203 kb on - strand, within MMJJ_RS02035 at 388.361 kb on - strand at 388.361 kb on - strand, within MMJJ_RS02035 at 388.361 kb on - strand, within MMJJ_RS02035 at 388.362 kb on + strand, within MMJJ_RS02035 at 388.363 kb on - strand, within MMJJ_RS02035 at 388.431 kb on - strand, within MMJJ_RS02035 at 388.470 kb on - strand, within MMJJ_RS02035 at 388.470 kb on - strand, within MMJJ_RS02035 at 388.470 kb on - strand, within MMJJ_RS02035 at 388.471 kb on + strand, within MMJJ_RS02035
Per-strain Table
Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite remove 386,638 - +0.7 386,639 + +1.4 386,668 - +1.7 386,688 - +2.0 386,691 + +2.8 386,855 - MMJJ_RS02020 0.27 +0.1 386,951 + +2.4 387,235 + MMJJ_RS02020 0.80 +2.1 387,388 - -0.3 387,459 + +1.2 387,765 - +0.4 387,766 + +1.9 387,777 + +1.0 387,781 + +2.1 387,781 + -0.2 387,781 + +0.6 387,781 + -1.5 387,781 + +0.1 387,782 - +1.6 387,782 - -0.7 387,782 - +1.2 387,785 + -0.8 387,785 + +2.3 387,796 + +2.3 387,808 - -1.4 387,825 + +0.9 387,825 + +2.7 387,828 - +1.2 387,833 - +1.4 388,037 - +2.5 388,038 + +0.0 388,045 + +1.4 388,049 + +0.3 388,060 + +0.3 388,159 - MMJJ_RS02035 0.13 -0.3 388,203 - MMJJ_RS02035 0.18 -0.1 388,361 - +2.8 388,361 - MMJJ_RS02035 0.36 -1.3 388,361 - MMJJ_RS02035 0.36 -1.6 388,362 + MMJJ_RS02035 0.36 -1.1 388,363 - MMJJ_RS02035 0.36 +1.0 388,431 - MMJJ_RS02035 0.44 +0.3 388,470 - MMJJ_RS02035 0.48 -0.5 388,470 - MMJJ_RS02035 0.48 -0.3 388,470 - MMJJ_RS02035 0.48 -0.1 388,471 + MMJJ_RS02035 0.49 -1.3
Or see this region's nucleotide sequence