Experiment: Formate 100 mM hypophosphite
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01430 and MMJJ_RS01435 are separated by 5 nucleotides MMJJ_RS01435 and MMJJ_RS01440 are separated by 69 nucleotides MMJJ_RS01440 and MMJJ_RS01445 are separated by 94 nucleotides
MMJJ_RS01430: MMJJ_RS01430 - hypothetical protein, at 279,231 to 279,776
_RS01430
MMJJ_RS01435: MMJJ_RS01435 - 4Fe-4S binding protein, at 279,782 to 280,483
_RS01435
MMJJ_RS01440: MMJJ_RS01440 - NCS2 family permease, at 280,553 to 281,854
_RS01440
MMJJ_RS01445: MMJJ_RS01445 - O-phosphoserine--tRNA ligase, at 281,949 to 283,562
_RS01445
Position (kb) 280
281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 279.567 kb on + strand, within MMJJ_RS01430 at 279.574 kb on - strand, within MMJJ_RS01430 at 279.574 kb on - strand, within MMJJ_RS01430 at 279.588 kb on + strand, within MMJJ_RS01430 at 279.611 kb on + strand, within MMJJ_RS01430 at 279.611 kb on + strand, within MMJJ_RS01430 at 279.635 kb on + strand, within MMJJ_RS01430 at 279.640 kb on + strand, within MMJJ_RS01430 at 279.677 kb on + strand, within MMJJ_RS01430 at 279.681 kb on + strand, within MMJJ_RS01430 at 279.747 kb on + strand at 279.779 kb on - strand at 279.779 kb on - strand at 279.780 kb on + strand at 279.814 kb on + strand at 279.869 kb on + strand, within MMJJ_RS01435 at 279.869 kb on + strand, within MMJJ_RS01435 at 279.873 kb on - strand, within MMJJ_RS01435 at 279.982 kb on - strand, within MMJJ_RS01435 at 279.982 kb on - strand, within MMJJ_RS01435 at 279.983 kb on + strand, within MMJJ_RS01435 at 279.983 kb on + strand, within MMJJ_RS01435 at 279.985 kb on + strand, within MMJJ_RS01435 at 280.016 kb on - strand, within MMJJ_RS01435 at 280.017 kb on + strand, within MMJJ_RS01435 at 280.018 kb on - strand, within MMJJ_RS01435 at 280.019 kb on + strand, within MMJJ_RS01435 at 280.035 kb on - strand, within MMJJ_RS01435 at 280.040 kb on + strand, within MMJJ_RS01435 at 280.040 kb on + strand, within MMJJ_RS01435 at 280.063 kb on + strand, within MMJJ_RS01435 at 280.063 kb on + strand, within MMJJ_RS01435 at 280.091 kb on - strand, within MMJJ_RS01435 at 280.091 kb on - strand, within MMJJ_RS01435 at 280.095 kb on - strand, within MMJJ_RS01435 at 280.100 kb on - strand, within MMJJ_RS01435 at 280.101 kb on + strand at 280.124 kb on - strand, within MMJJ_RS01435 at 280.125 kb on + strand, within MMJJ_RS01435 at 280.125 kb on + strand, within MMJJ_RS01435 at 280.148 kb on - strand, within MMJJ_RS01435 at 280.148 kb on - strand at 280.148 kb on - strand, within MMJJ_RS01435 at 280.148 kb on - strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.152 kb on - strand, within MMJJ_RS01435 at 280.153 kb on + strand, within MMJJ_RS01435 at 280.164 kb on - strand, within MMJJ_RS01435 at 280.164 kb on - strand, within MMJJ_RS01435 at 280.165 kb on + strand, within MMJJ_RS01435 at 280.165 kb on + strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.216 kb on + strand, within MMJJ_RS01435 at 280.216 kb on + strand, within MMJJ_RS01435 at 280.221 kb on - strand, within MMJJ_RS01435 at 280.221 kb on - strand, within MMJJ_RS01435 at 280.245 kb on + strand, within MMJJ_RS01435 at 280.272 kb on + strand, within MMJJ_RS01435 at 280.305 kb on - strand, within MMJJ_RS01435 at 280.342 kb on - strand, within MMJJ_RS01435 at 280.343 kb on + strand, within MMJJ_RS01435 at 280.343 kb on + strand, within MMJJ_RS01435 at 280.349 kb on + strand, within MMJJ_RS01435 at 280.391 kb on + strand, within MMJJ_RS01435 at 280.393 kb on - strand, within MMJJ_RS01435 at 280.394 kb on + strand, within MMJJ_RS01435 at 280.394 kb on + strand, within MMJJ_RS01435 at 280.395 kb on - strand, within MMJJ_RS01435 at 280.396 kb on + strand, within MMJJ_RS01435 at 280.424 kb on + strand at 280.467 kb on - strand at 280.468 kb on + strand at 280.473 kb on + strand at 280.473 kb on + strand at 280.503 kb on + strand at 280.513 kb on - strand at 280.517 kb on - strand at 280.518 kb on + strand at 280.536 kb on + strand at 280.599 kb on - strand at 280.599 kb on - strand at 280.614 kb on + strand at 280.667 kb on - strand at 280.668 kb on + strand at 280.692 kb on - strand, within MMJJ_RS01440 at 280.692 kb on - strand, within MMJJ_RS01440 at 280.693 kb on + strand, within MMJJ_RS01440 at 280.693 kb on + strand, within MMJJ_RS01440 at 280.712 kb on - strand, within MMJJ_RS01440 at 280.712 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440 at 280.797 kb on + strand, within MMJJ_RS01440 at 280.799 kb on - strand, within MMJJ_RS01440 at 280.818 kb on - strand, within MMJJ_RS01440 at 280.880 kb on - strand, within MMJJ_RS01440 at 280.880 kb on - strand, within MMJJ_RS01440 at 280.880 kb on - strand, within MMJJ_RS01440 at 280.907 kb on + strand, within MMJJ_RS01440 at 280.939 kb on + strand, within MMJJ_RS01440 at 281.040 kb on - strand, within MMJJ_RS01440 at 281.041 kb on + strand, within MMJJ_RS01440 at 281.080 kb on - strand, within MMJJ_RS01440 at 281.081 kb on + strand, within MMJJ_RS01440 at 281.115 kb on + strand, within MMJJ_RS01440 at 281.121 kb on + strand, within MMJJ_RS01440 at 281.121 kb on + strand, within MMJJ_RS01440 at 281.122 kb on - strand, within MMJJ_RS01440 at 281.122 kb on - strand, within MMJJ_RS01440 at 281.123 kb on + strand, within MMJJ_RS01440 at 281.195 kb on - strand, within MMJJ_RS01440 at 281.251 kb on - strand, within MMJJ_RS01440 at 281.284 kb on - strand, within MMJJ_RS01440 at 281.361 kb on + strand, within MMJJ_RS01440 at 281.368 kb on - strand, within MMJJ_RS01440 at 281.410 kb on - strand, within MMJJ_RS01440 at 281.411 kb on + strand, within MMJJ_RS01440 at 281.478 kb on + strand, within MMJJ_RS01440 at 281.562 kb on + strand, within MMJJ_RS01440 at 281.634 kb on - strand, within MMJJ_RS01440 at 281.638 kb on - strand, within MMJJ_RS01440 at 281.656 kb on - strand, within MMJJ_RS01440 at 281.656 kb on - strand, within MMJJ_RS01440 at 281.656 kb on - strand, within MMJJ_RS01440 at 281.657 kb on + strand, within MMJJ_RS01440 at 281.680 kb on - strand, within MMJJ_RS01440 at 281.680 kb on - strand, within MMJJ_RS01440 at 281.680 kb on - strand, within MMJJ_RS01440 at 281.680 kb on - strand, within MMJJ_RS01440 at 281.680 kb on - strand, within MMJJ_RS01440 at 281.680 kb on - strand, within MMJJ_RS01440 at 281.681 kb on + strand, within MMJJ_RS01440 at 281.681 kb on + strand, within MMJJ_RS01440 at 281.681 kb on + strand, within MMJJ_RS01440 at 281.681 kb on + strand, within MMJJ_RS01440 at 281.681 kb on + strand, within MMJJ_RS01440 at 281.681 kb on + strand, within MMJJ_RS01440 at 281.681 kb on + strand, within MMJJ_RS01440 at 281.726 kb on - strand at 281.741 kb on - strand at 281.748 kb on + strand at 281.748 kb on + strand at 281.753 kb on + strand at 281.754 kb on - strand at 281.755 kb on + strand at 281.755 kb on + strand at 281.755 kb on + strand at 281.795 kb on - strand at 281.812 kb on - strand at 281.813 kb on + strand at 281.874 kb on + strand at 281.874 kb on + strand at 281.876 kb on - strand at 281.879 kb on + strand at 281.883 kb on - strand at 281.884 kb on + strand at 281.886 kb on + strand at 281.894 kb on + strand at 282.634 kb on + strand at 282.677 kb on - strand, within MMJJ_RS01445
Per-strain Table
Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite remove 279,567 + MMJJ_RS01430 0.62 -0.3 279,574 - MMJJ_RS01430 0.63 -0.7 279,574 - MMJJ_RS01430 0.63 +2.1 279,588 + MMJJ_RS01430 0.65 +0.9 279,611 + MMJJ_RS01430 0.70 +0.1 279,611 + MMJJ_RS01430 0.70 +0.9 279,635 + MMJJ_RS01430 0.74 -0.2 279,640 + MMJJ_RS01430 0.75 +3.0 279,677 + MMJJ_RS01430 0.82 +2.5 279,681 + MMJJ_RS01430 0.82 -0.1 279,747 + -1.2 279,779 - +0.5 279,779 - +0.1 279,780 + +0.4 279,814 + -0.6 279,869 + MMJJ_RS01435 0.12 +0.3 279,869 + MMJJ_RS01435 0.12 -0.6 279,873 - MMJJ_RS01435 0.13 -1.1 279,982 - MMJJ_RS01435 0.28 +1.4 279,982 - MMJJ_RS01435 0.28 +0.4 279,983 + MMJJ_RS01435 0.29 -3.0 279,983 + MMJJ_RS01435 0.29 -0.5 279,985 + MMJJ_RS01435 0.29 +2.4 280,016 - MMJJ_RS01435 0.33 -0.2 280,017 + MMJJ_RS01435 0.33 -0.0 280,018 - MMJJ_RS01435 0.34 +0.2 280,019 + MMJJ_RS01435 0.34 +1.0 280,035 - MMJJ_RS01435 0.36 +0.5 280,040 + MMJJ_RS01435 0.37 -0.1 280,040 + MMJJ_RS01435 0.37 -0.5 280,063 + MMJJ_RS01435 0.40 -1.2 280,063 + MMJJ_RS01435 0.40 +1.2 280,091 - MMJJ_RS01435 0.44 -1.0 280,091 - MMJJ_RS01435 0.44 +0.0 280,095 - MMJJ_RS01435 0.45 +1.4 280,100 - MMJJ_RS01435 0.45 +0.2 280,101 + +3.6 280,124 - MMJJ_RS01435 0.49 -0.3 280,125 + MMJJ_RS01435 0.49 -0.6 280,125 + MMJJ_RS01435 0.49 -1.9 280,148 - MMJJ_RS01435 0.52 +1.7 280,148 - +2.4 280,148 - MMJJ_RS01435 0.52 -0.0 280,148 - MMJJ_RS01435 0.52 +1.7 280,149 + MMJJ_RS01435 0.52 -0.6 280,149 + MMJJ_RS01435 0.52 +0.3 280,149 + MMJJ_RS01435 0.52 -1.2 280,149 + MMJJ_RS01435 0.52 +0.4 280,152 - MMJJ_RS01435 0.53 +0.1 280,153 + MMJJ_RS01435 0.53 -0.5 280,164 - MMJJ_RS01435 0.54 +0.5 280,164 - MMJJ_RS01435 0.54 -0.1 280,165 + MMJJ_RS01435 0.55 +1.0 280,165 + MMJJ_RS01435 0.55 -0.0 280,213 - MMJJ_RS01435 0.61 -1.5 280,213 - MMJJ_RS01435 0.61 +1.5 280,213 - MMJJ_RS01435 0.61 +1.8 280,213 - MMJJ_RS01435 0.61 +0.2 280,214 + MMJJ_RS01435 0.62 +1.6 280,214 + MMJJ_RS01435 0.62 +0.6 280,214 + MMJJ_RS01435 0.62 -0.9 280,214 + MMJJ_RS01435 0.62 +0.5 280,215 - MMJJ_RS01435 0.62 +1.0 280,215 - MMJJ_RS01435 0.62 -0.9 280,215 - MMJJ_RS01435 0.62 +1.2 280,216 + MMJJ_RS01435 0.62 +1.6 280,216 + MMJJ_RS01435 0.62 -0.8 280,221 - MMJJ_RS01435 0.63 -0.6 280,221 - MMJJ_RS01435 0.63 +1.2 280,245 + MMJJ_RS01435 0.66 -0.3 280,272 + MMJJ_RS01435 0.70 +1.6 280,305 - MMJJ_RS01435 0.75 +0.2 280,342 - MMJJ_RS01435 0.80 -0.0 280,343 + MMJJ_RS01435 0.80 +0.4 280,343 + MMJJ_RS01435 0.80 -0.9 280,349 + MMJJ_RS01435 0.81 -1.4 280,391 + MMJJ_RS01435 0.87 +0.9 280,393 - MMJJ_RS01435 0.87 +0.0 280,394 + MMJJ_RS01435 0.87 -0.3 280,394 + MMJJ_RS01435 0.87 -1.1 280,395 - MMJJ_RS01435 0.87 -1.0 280,396 + MMJJ_RS01435 0.87 -0.7 280,424 + -0.5 280,467 - +0.7 280,468 + -0.5 280,473 + +0.0 280,473 + +0.4 280,503 + -0.7 280,513 - -1.6 280,517 - +2.8 280,518 + +0.3 280,536 + +0.9 280,599 - +0.9 280,599 - -1.3 280,614 + +0.9 280,667 - +0.1 280,668 + +0.0 280,692 - MMJJ_RS01440 0.11 +0.9 280,692 - MMJJ_RS01440 0.11 -0.0 280,693 + MMJJ_RS01440 0.11 -0.2 280,693 + MMJJ_RS01440 0.11 -0.7 280,712 - MMJJ_RS01440 0.12 -1.1 280,712 - MMJJ_RS01440 0.12 +0.1 280,720 - MMJJ_RS01440 0.13 +0.2 280,720 - MMJJ_RS01440 0.13 -0.1 280,720 - MMJJ_RS01440 0.13 +0.8 280,797 + MMJJ_RS01440 0.19 -0.7 280,799 - MMJJ_RS01440 0.19 +0.9 280,818 - MMJJ_RS01440 0.20 +2.2 280,880 - MMJJ_RS01440 0.25 +0.7 280,880 - MMJJ_RS01440 0.25 +11.2 280,880 - MMJJ_RS01440 0.25 +0.9 280,907 + MMJJ_RS01440 0.27 +0.6 280,939 + MMJJ_RS01440 0.30 -0.2 281,040 - MMJJ_RS01440 0.37 +0.7 281,041 + MMJJ_RS01440 0.37 -0.5 281,080 - MMJJ_RS01440 0.40 -1.0 281,081 + MMJJ_RS01440 0.41 +0.2 281,115 + MMJJ_RS01440 0.43 +0.4 281,121 + MMJJ_RS01440 0.44 -0.8 281,121 + MMJJ_RS01440 0.44 +0.6 281,122 - MMJJ_RS01440 0.44 +3.0 281,122 - MMJJ_RS01440 0.44 -0.6 281,123 + MMJJ_RS01440 0.44 -1.5 281,195 - MMJJ_RS01440 0.49 -0.1 281,251 - MMJJ_RS01440 0.54 +0.4 281,284 - MMJJ_RS01440 0.56 +0.5 281,361 + MMJJ_RS01440 0.62 -0.7 281,368 - MMJJ_RS01440 0.63 +0.9 281,410 - MMJJ_RS01440 0.66 +1.2 281,411 + MMJJ_RS01440 0.66 +0.8 281,478 + MMJJ_RS01440 0.71 +0.9 281,562 + MMJJ_RS01440 0.77 +3.3 281,634 - MMJJ_RS01440 0.83 +0.5 281,638 - MMJJ_RS01440 0.83 +1.9 281,656 - MMJJ_RS01440 0.85 -0.9 281,656 - MMJJ_RS01440 0.85 -0.0 281,656 - MMJJ_RS01440 0.85 +0.8 281,657 + MMJJ_RS01440 0.85 +0.7 281,680 - MMJJ_RS01440 0.87 +0.1 281,680 - MMJJ_RS01440 0.87 -0.5 281,680 - MMJJ_RS01440 0.87 -0.3 281,680 - MMJJ_RS01440 0.87 +1.4 281,680 - MMJJ_RS01440 0.87 -0.3 281,680 - MMJJ_RS01440 0.87 +1.7 281,681 + MMJJ_RS01440 0.87 +0.1 281,681 + MMJJ_RS01440 0.87 +1.1 281,681 + MMJJ_RS01440 0.87 +0.2 281,681 + MMJJ_RS01440 0.87 +0.4 281,681 + MMJJ_RS01440 0.87 -0.0 281,681 + MMJJ_RS01440 0.87 +0.2 281,681 + MMJJ_RS01440 0.87 -0.5 281,726 - -1.6 281,741 - -1.8 281,748 + -0.6 281,748 + -0.3 281,753 + +0.6 281,754 - +3.3 281,755 + -2.1 281,755 + +1.3 281,755 + +0.6 281,795 - -0.2 281,812 - +1.7 281,813 + +0.0 281,874 + -0.5 281,874 + +0.4 281,876 - -0.4 281,879 + -0.6 281,883 - +1.3 281,884 + +1.2 281,886 + +0.3 281,894 + +0.0 282,634 + +2.3 282,677 - MMJJ_RS01445 0.45 +2.6
Or see this region's nucleotide sequence