Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00240

Experiment: Formate 100 mM hypophosphite

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate 100 mM hypophosphite
46,586	+		MMJJ_RS00235	0.55	+0.6
46,586	+		MMJJ_RS00235	0.55	-0.7
46,594	+		MMJJ_RS00235	0.55	-0.3
46,673	-		MMJJ_RS00235	0.59	+0.0
46,674	+		MMJJ_RS00235	0.59	-0.9
46,681	-		MMJJ_RS00235	0.60	+0.4
46,682	+		MMJJ_RS00235	0.60	-0.4
46,686	+		MMJJ_RS00235	0.60	+0.1
46,686	+		MMJJ_RS00235	0.60	-0.7
46,723	-		MMJJ_RS00235	0.62	-1.1
46,724	+		MMJJ_RS00235	0.62	-0.1
46,730	+		MMJJ_RS00235	0.62	-0.1
46,747	+		MMJJ_RS00235	0.63	-0.4
46,747	+		MMJJ_RS00235	0.63	-0.3
46,760	-		MMJJ_RS00235	0.64	-0.6
46,760	-		MMJJ_RS00235	0.64	-1.0
46,760	-		MMJJ_RS00235	0.64	-1.5
46,761	+		MMJJ_RS00235	0.64	+0.5
46,762	-		MMJJ_RS00235	0.64	+0.7
46,763	+		MMJJ_RS00235	0.64	+0.1
46,763	+		MMJJ_RS00235	0.64	-0.0
46,769	-		MMJJ_RS00235	0.64	+0.3
46,769	-		MMJJ_RS00235	0.64	-1.6
46,774	-		MMJJ_RS00235	0.65	+0.6
46,774	-		MMJJ_RS00235	0.65	-1.9
46,775	+		MMJJ_RS00235	0.65	+0.6
46,847	-		MMJJ_RS00235	0.69	+0.2
46,860	-		MMJJ_RS00235	0.69	+0.1
47,043	+		MMJJ_RS00235	0.79	-0.2
47,060	-		MMJJ_RS00235	0.80	+2.2
47,174	-		MMJJ_RS00235	0.86	+1.3
47,174	-		MMJJ_RS00235	0.86	+0.7
47,174	-		MMJJ_RS00235	0.86	-0.1
47,174	-		MMJJ_RS00235	0.86	-0.5
47,174	-		MMJJ_RS00235	0.86	+0.2
47,174	-		MMJJ_RS00235	0.86	+0.4
47,174	-		MMJJ_RS00235	0.86	+0.0
47,175	+		MMJJ_RS00235	0.86	+1.3
47,175	+		MMJJ_RS00235	0.86	+0.6
47,175	+		MMJJ_RS00235	0.86	-0.7
47,346	+				-0.4
47,389	-				+1.3
47,423	-				-1.2
47,423	-				-1.2
47,423	-				-0.6
47,423	-				+1.2
47,423	-				+0.3
47,423	-				+0.3
47,423	-				+1.4
47,423	-				+2.9
47,423	-				+0.2
47,424	+				+1.8
47,424	+				-0.0
47,424	+				-0.3
47,424	+				-0.2
47,424	+				-0.8
47,424	+				+2.8
47,425	-				-2.5
47,425	-				-1.5
47,425	-				+0.3
47,425	-				-1.4
47,425	-				+0.7
47,425	-				-0.1
47,425	-				-1.1
47,425	-				-0.5
47,425	-				-0.4
47,426	+				-0.8
47,426	+				+1.8
47,426	+				-0.4
47,426	+				-1.8
47,426	+				+0.4
47,426	+				+0.5
47,426	+				-0.8
47,426	+				+0.0
47,427	-				-0.9
47,427	-				+0.0
47,427	-				+0.2
47,427	-				-1.4
47,427	-				+0.7
47,427	-				-1.3
47,428	+				-2.3
47,428	+				-2.0
47,428	+				+0.2
47,450	-				+0.8
47,451	+				-0.5
47,451	+				+0.4
47,454	-				-1.2
47,460	-				-1.9
47,471	-				-1.3
47,472	+				-0.2
47,472	+				-0.3
47,477	-				-0.5
47,478	+				-0.6
47,478	+				+0.6
47,479	-				-1.2
47,479	-				-0.6
47,494	+				+0.1
47,494	+				-0.5
47,529	-				-0.8
47,530	+				-0.5
47,553	+				-0.5
47,555	-				+0.3
47,555	-				-1.2
47,568	+				+3.2
47,576	-				-1.0
47,576	-				-0.9
47,577	+				-0.6
47,577	+				-1.4
47,577	+				+1.5
47,597	-				+0.8
47,598	+				-1.2
47,598	+				-0.2
47,598	+				-0.0
47,602	+				+0.0
47,629	-		MMJJ_RS00240	0.12	-0.1
47,665	-		MMJJ_RS00240	0.15	-0.3
47,668	+		MMJJ_RS00240	0.15	-1.5
47,690	-		MMJJ_RS00240	0.18	-0.3
47,697	-		MMJJ_RS00240	0.18	-0.0
47,698	+		MMJJ_RS00240	0.18	+0.3
47,709	+		MMJJ_RS00240	0.19	-0.7
47,724	+		MMJJ_RS00240	0.21	-1.2
47,741	-		MMJJ_RS00240	0.23	-0.8
47,779	-		MMJJ_RS00240	0.26	-0.8
47,779	-		MMJJ_RS00240	0.26	-2.3
47,797	-		MMJJ_RS00240	0.28	-1.5
47,798	+		MMJJ_RS00240	0.28	-0.1
47,799	-		MMJJ_RS00240	0.28	-0.3
47,799	-		MMJJ_RS00240	0.28	-1.5
47,799	-		MMJJ_RS00240	0.28	-0.6
47,799	-		MMJJ_RS00240	0.28	-2.0
47,799	-		MMJJ_RS00240	0.28	-1.6
47,799	-		MMJJ_RS00240	0.28	-2.4
47,800	+		MMJJ_RS00240	0.28	-0.5
47,800	+		MMJJ_RS00240	0.28	-0.5
47,800	+		MMJJ_RS00240	0.28	-0.0
47,804	-		MMJJ_RS00240	0.29	-0.6
47,811	-		MMJJ_RS00240	0.30	-1.9
47,814	+		MMJJ_RS00240	0.30	-0.8
47,818	-		MMJJ_RS00240	0.30	-0.6
47,819	+		MMJJ_RS00240	0.30	-1.1
47,819	+		MMJJ_RS00240	0.30	-0.3
47,819	+		MMJJ_RS00240	0.30	+1.6
47,820	-		MMJJ_RS00240	0.30	+0.2
47,822	-		MMJJ_RS00240	0.31	-0.7
47,822	-		MMJJ_RS00240	0.31	-1.8
47,823	+		MMJJ_RS00240	0.31	+1.4
47,828	-		MMJJ_RS00240	0.31	+3.0
47,828	-		MMJJ_RS00240	0.31	+0.3
47,829	+		MMJJ_RS00240	0.31	+0.7
47,853	+		MMJJ_RS00240	0.34	-0.9
47,921	+		MMJJ_RS00240	0.40	-1.2
47,934	+		MMJJ_RS00240	0.42	-0.3
47,956	+		MMJJ_RS00240	0.44	-0.8
47,971	-		MMJJ_RS00240	0.45	-1.9
47,971	-		MMJJ_RS00240	0.45	-0.5
47,974	-		MMJJ_RS00240	0.46	-1.1
47,994	-		MMJJ_RS00240	0.48	-0.4
47,995	+		MMJJ_RS00240	0.48	+0.4
47,995	+		MMJJ_RS00240	0.48	-0.4
47,995	+		MMJJ_RS00240	0.48	-0.5
47,995	+		MMJJ_RS00240	0.48	-0.5
48,080	+		MMJJ_RS00240	0.56	-1.0
48,080	+		MMJJ_RS00240	0.56	+1.1
48,118	+		MMJJ_RS00240	0.60	+0.4
48,233	-		MMJJ_RS00240	0.71	-0.7
48,235	-		MMJJ_RS00240	0.72	-0.3
48,235	-		MMJJ_RS00240	0.72	-0.4
48,235	-		MMJJ_RS00240	0.72	-0.9
48,235	-		MMJJ_RS00240	0.72	-1.7
48,235	-		MMJJ_RS00240	0.72	+0.2
48,235	-		MMJJ_RS00240	0.72	+0.4
48,235	-		MMJJ_RS00240	0.72	-0.0
48,235	-		MMJJ_RS00240	0.72	-0.7
48,236	+		MMJJ_RS00240	0.72	-0.2
48,236	+		MMJJ_RS00240	0.72	-0.4
48,236	+		MMJJ_RS00240	0.72	+0.1
48,236	+		MMJJ_RS00240	0.72	-1.2
48,236	+		MMJJ_RS00240	0.72	-0.9
48,257	+		MMJJ_RS00240	0.74	+0.1
48,290	-		MMJJ_RS00240	0.77	-0.2
48,338	-		MMJJ_RS00240	0.82	+0.1
48,338	-		MMJJ_RS00240	0.82	-1.1
48,356	-		MMJJ_RS00240	0.83	+0.6
48,357	+		MMJJ_RS00240	0.84	-0.6
48,372	-		MMJJ_RS00240	0.85	+0.4
48,444	+				-1.0
48,501	-				+1.0
48,501	-				+3.3
48,502	+				-0.2
48,504	-				+2.6
48,507	-				+1.4
48,508	+				-0.8
48,508	+				-0.1
48,509	-				+0.9
48,510	+				-1.3
48,521	+				-1.2
48,585	-				+3.2
48,901	+		MMJJ_RS00245	0.79	+2.2
48,993	-				-0.5
48,995	-				-0.9
48,995	-				-0.9
49,006	-				-0.9
49,006	-				-0.8
49,006	-				-0.3
49,010	-				+1.0
49,011	+				+1.2
49,029	-				+0.8
49,029	-				-1.5
49,030	+				+0.1
49,030	+				+1.6
49,030	+				-0.7
49,030	+				-0.2
49,040	+				-0.5
49,056	+				-0.7
49,056	+				-0.6
49,056	+				+0.1
49,056	+				-0.3
49,123	+		MMJJ_RS00250	0.14	-0.4
49,123	+		MMJJ_RS00250	0.14	+0.6
49,125	+		MMJJ_RS00250	0.14	-0.8
49,155	-		MMJJ_RS00250	0.18	+0.2
49,155	-		MMJJ_RS00250	0.18	-0.2
49,156	+		MMJJ_RS00250	0.18	-0.2
49,156	+		MMJJ_RS00250	0.18	+0.0
49,221	-		MMJJ_RS00250	0.26	-1.2
49,221	-		MMJJ_RS00250	0.26	+0.1
49,222	+		MMJJ_RS00250	0.26	-0.8
49,247	+		MMJJ_RS00250	0.29	-0.5
49,257	-		MMJJ_RS00250	0.30	+0.4
49,324	+		MMJJ_RS00250	0.38	+2.0
49,324	+		MMJJ_RS00250	0.38	-0.4
49,381	-		MMJJ_RS00250	0.46	-0.2
49,382	+		MMJJ_RS00250	0.46	+0.7
49,385	-		MMJJ_RS00250	0.46	-0.9
49,397	-		MMJJ_RS00250	0.47	+1.0
49,433	-		MMJJ_RS00250	0.52	+0.2
49,508	-		MMJJ_RS00250	0.61	+0.5
49,509	+		MMJJ_RS00250	0.61	+1.2